data_3V1F # _entry.id 3V1F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3V1F pdb_00003v1f 10.2210/pdb3v1f/pdb RCSB RCSB069473 ? ? WWPDB D_1000069473 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YZM 'This deposition is a computational redesign of 1YZM.' unspecified PDB 3V1A . unspecified PDB 3V1B . unspecified PDB 3V1C . unspecified PDB 3V1D . unspecified PDB 3V1E . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3V1F _pdbx_database_status.recvd_initial_deposition_date 2011-12-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Der, B.S.' 1 'Machius, M.' 2 'Miley, M.J.' 3 'Kuhlman, B.' 4 # _citation.id primary _citation.title 'Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 375 _citation.page_last 385 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22092237 _citation.pdbx_database_id_DOI 10.1021/ja208015j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Der, B.S.' 1 ? primary 'Machius, M.' 2 ? primary 'Miley, M.J.' 3 ? primary 'Mills, J.L.' 4 ? primary 'Szyperski, T.' 5 ? primary 'Kuhlman, B.' 6 ? # _cell.entry_id 3V1F _cell.length_a 37.241 _cell.length_b 46.528 _cell.length_c 62.277 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3V1F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Computational design, MID1-zinc H35E mutant' 5490.085 2 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 water nat water 18.015 148 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Computational redesign of the biological sequence.' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLEQLMHEYFQQSD _entity_poly.pdbx_seq_one_letter_code_can GSGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLEQLMHEYFQQSD _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 SER n 1 5 PRO n 1 6 LEU n 1 7 ALA n 1 8 GLN n 1 9 GLN n 1 10 ILE n 1 11 LYS n 1 12 ASN n 1 13 ILE n 1 14 HIS n 1 15 SER n 1 16 PHE n 1 17 ILE n 1 18 HIS n 1 19 GLN n 1 20 ALA n 1 21 LYS n 1 22 ALA n 1 23 ALA n 1 24 GLY n 1 25 ARG n 1 26 MET n 1 27 ASP n 1 28 GLU n 1 29 VAL n 1 30 ARG n 1 31 THR n 1 32 LEU n 1 33 GLN n 1 34 GLU n 1 35 ASN n 1 36 LEU n 1 37 GLU n 1 38 GLN n 1 39 LEU n 1 40 MET n 1 41 HIS n 1 42 GLU n 1 43 TYR n 1 44 PHE n 1 45 GLN n 1 46 GLN n 1 47 SER n 1 48 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ARTIFICIAL GENE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pQE-80L MBP fusion' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3V1F _struct_ref.pdbx_db_accession 3V1F _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3V1F A 1 ? 48 ? 3V1F -1 ? 46 ? -1 46 2 1 3V1F B 1 ? 48 ? 3V1F -1 ? 46 ? -1 46 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3V1F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;1-2 microliters protein (20 mg/ml, 100 mM ammonium acetate buffer) mixed with 1 microliter crystallization buffer (0.1 M sodium acetate, pH 4.0, 15% PEG 600, 10% isopropanol, 5% glycerol), VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-10-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3V1F _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 26.345 _reflns.d_resolution_high 1.151 _reflns.number_obs 72577 _reflns.number_all 72577 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.3 _reflns.B_iso_Wilson_estimate 12.07 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 77.1 _reflns_shell.Rmerge_I_obs 0.650 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3V1F _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 72476 _refine.ls_number_reflns_all 72476 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.345 _refine.ls_d_res_high 1.151 _refine.ls_percent_reflns_obs 97.67 _refine.ls_R_factor_obs 0.1621 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1608 _refine.ls_R_factor_R_free 0.1863 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.21 _refine.ls_number_reflns_R_free 1870 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.8925 _refine.aniso_B[2][2] -5.5055 _refine.aniso_B[3][3] 2.6130 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.406 _refine.solvent_model_param_bsol 52.719 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.47 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1YZM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Anisotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.11 _refine.pdbx_overall_phase_error 17.25 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 707 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 865 _refine_hist.d_res_high 1.151 _refine_hist.d_res_low 26.345 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 748 'X-RAY DIFFRACTION' ? f_angle_d 1.244 ? ? 1000 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.270 ? ? 290 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 104 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 135 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.1507 1.1652 2033 0.2730 76.00 0.3337 . . 111 . . . . 'X-RAY DIFFRACTION' . 1.1652 1.1806 2234 0.2671 87.00 0.2892 . . 121 . . . . 'X-RAY DIFFRACTION' . 1.1806 1.1967 2383 0.2518 91.00 0.2276 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.1967 1.2138 2497 0.2294 96.00 0.2062 . . 135 . . . . 'X-RAY DIFFRACTION' . 1.2138 1.2320 2493 0.2122 97.00 0.2577 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.2320 1.2512 2587 0.1966 99.00 0.2426 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.2512 1.2717 2583 0.1885 100.00 0.2399 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.2717 1.2937 2640 0.1727 100.00 0.1881 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.2937 1.3172 2586 0.1642 100.00 0.1768 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.3172 1.3425 2590 0.1600 100.00 0.1713 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.3425 1.3699 2626 0.1454 100.00 0.1691 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.3699 1.3997 2575 0.1382 100.00 0.1706 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.3997 1.4323 2627 0.1310 100.00 0.2023 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.4323 1.4681 2565 0.1211 100.00 0.1220 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.4681 1.5078 2606 0.1092 100.00 0.1488 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.5078 1.5521 2632 0.1088 100.00 0.1191 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.5521 1.6022 2598 0.1097 100.00 0.1524 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.6022 1.6595 2605 0.1188 100.00 0.1428 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.6595 1.7259 2594 0.1237 100.00 0.1321 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.7259 1.8044 2573 0.1204 100.00 0.1791 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.8044 1.8995 2603 0.1343 100.00 0.1414 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.8995 2.0185 2612 0.1428 100.00 0.1960 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.0185 2.1743 2586 0.1465 100.00 0.1644 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.1743 2.3930 2620 0.1417 100.00 0.1418 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.3930 2.7389 2597 0.1585 100.00 0.1731 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.7389 3.4495 2601 0.1741 100.00 0.2100 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.4495 26.3519 2451 0.2067 94.00 0.2480 . . 136 . . . . # _struct.entry_id 3V1F _struct.title 'Crystal structure of de novo designed MID1-zinc H35E mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3V1F _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN, METAL BINDING PROTEIN' _struct_keywords.text 'Helix-turn-helix, metal binding, homodimer, DE NOVO PROTEIN, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? ALA A 23 ? SER A 2 ALA A 21 1 ? 20 HELX_P HELX_P2 2 ARG A 25 ? GLN A 46 ? ARG A 23 GLN A 44 1 ? 22 HELX_P HELX_P3 3 PRO B 5 ? ALA B 23 ? PRO B 3 ALA B 21 1 ? 19 HELX_P HELX_P4 4 ARG B 25 ? PHE B 44 ? ARG B 23 PHE B 42 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 14 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 12 B ZN 703 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc2 metalc ? ? A HIS 18 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 16 B ZN 703 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc3 metalc ? ? A GLU 37 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 35 A ZN 704 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc4 metalc ? ? A HIS 41 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 39 A ZN 704 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc5 metalc ? ? C ZN . ZN ? ? ? 1_555 B HIS 14 NE2 ? ? A ZN 704 B HIS 12 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc6 metalc ? ? C ZN . ZN ? ? ? 1_555 B HIS 18 NE2 ? ? A ZN 704 B HIS 16 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc7 metalc ? ? B GLU 37 OE2 ? ? ? 1_555 E ZN . ZN ? ? B GLU 35 B ZN 703 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc8 metalc ? ? B HIS 41 ND1 ? ? ? 1_555 E ZN . ZN ? ? B HIS 39 B ZN 703 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 704 ? 4 'BINDING SITE FOR RESIDUE ZN A 704' AC2 Software A EDO 47 ? 5 'BINDING SITE FOR RESIDUE EDO A 47' AC3 Software B ZN 703 ? 4 'BINDING SITE FOR RESIDUE ZN B 703' AC4 Software B ACT 47 ? 7 'BINDING SITE FOR RESIDUE ACT B 47' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 37 ? GLU A 35 . ? 1_555 ? 2 AC1 4 HIS A 41 ? HIS A 39 . ? 1_555 ? 3 AC1 4 HIS B 14 ? HIS B 12 . ? 1_555 ? 4 AC1 4 HIS B 18 ? HIS B 16 . ? 1_555 ? 5 AC2 5 GLN A 19 ? GLN A 17 . ? 1_555 ? 6 AC2 5 HOH G . ? HOH A 54 . ? 1_555 ? 7 AC2 5 HOH G . ? HOH A 98 . ? 1_555 ? 8 AC2 5 HOH G . ? HOH A 158 . ? 1_555 ? 9 AC2 5 LEU B 32 ? LEU B 30 . ? 3_646 ? 10 AC3 4 HIS A 14 ? HIS A 12 . ? 1_555 ? 11 AC3 4 HIS A 18 ? HIS A 16 . ? 1_555 ? 12 AC3 4 GLU B 37 ? GLU B 35 . ? 1_555 ? 13 AC3 4 HIS B 41 ? HIS B 39 . ? 1_555 ? 14 AC4 7 PHE A 16 ? PHE A 14 . ? 3_656 ? 15 AC4 7 LEU A 32 ? LEU A 30 . ? 3_656 ? 16 AC4 7 ASN A 35 ? ASN A 33 . ? 3_656 ? 17 AC4 7 GLN B 9 ? GLN B 7 . ? 1_555 ? 18 AC4 7 ASN B 35 ? ASN B 33 . ? 1_555 ? 19 AC4 7 GLN B 38 ? GLN B 36 . ? 1_555 ? 20 AC4 7 LEU B 39 ? LEU B 37 . ? 1_555 ? # _database_PDB_matrix.entry_id 3V1F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3V1F _atom_sites.fract_transf_matrix[1][1] 0.026852 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016057 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 GLY 3 1 1 GLY GLY A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 PRO 5 3 3 PRO PRO A . n A 1 6 LEU 6 4 4 LEU LEU A . n A 1 7 ALA 7 5 5 ALA ALA A . n A 1 8 GLN 8 6 6 GLN GLN A . n A 1 9 GLN 9 7 7 GLN GLN A . n A 1 10 ILE 10 8 8 ILE ILE A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 ASN 12 10 10 ASN ASN A . n A 1 13 ILE 13 11 11 ILE ILE A . n A 1 14 HIS 14 12 12 HIS HIS A . n A 1 15 SER 15 13 13 SER SER A . n A 1 16 PHE 16 14 14 PHE PHE A . n A 1 17 ILE 17 15 15 ILE ILE A . n A 1 18 HIS 18 16 16 HIS HIS A . n A 1 19 GLN 19 17 17 GLN GLN A . n A 1 20 ALA 20 18 18 ALA ALA A . n A 1 21 LYS 21 19 19 LYS LYS A . n A 1 22 ALA 22 20 20 ALA ALA A . n A 1 23 ALA 23 21 21 ALA ALA A . n A 1 24 GLY 24 22 22 GLY GLY A . n A 1 25 ARG 25 23 23 ARG ARG A . n A 1 26 MET 26 24 24 MET MET A . n A 1 27 ASP 27 25 25 ASP ASP A . n A 1 28 GLU 28 26 26 GLU GLU A . n A 1 29 VAL 29 27 27 VAL VAL A . n A 1 30 ARG 30 28 28 ARG ARG A . n A 1 31 THR 31 29 29 THR THR A . n A 1 32 LEU 32 30 30 LEU LEU A . n A 1 33 GLN 33 31 31 GLN GLN A . n A 1 34 GLU 34 32 32 GLU GLU A . n A 1 35 ASN 35 33 33 ASN ASN A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLN 38 36 36 GLN GLN A . n A 1 39 LEU 39 37 37 LEU LEU A . n A 1 40 MET 40 38 38 MET MET A . n A 1 41 HIS 41 39 39 HIS HIS A . n A 1 42 GLU 42 40 40 GLU GLU A . n A 1 43 TYR 43 41 41 TYR TYR A . n A 1 44 PHE 44 42 42 PHE PHE A . n A 1 45 GLN 45 43 43 GLN GLN A . n A 1 46 GLN 46 44 44 GLN GLN A . n A 1 47 SER 47 45 ? ? ? A . n A 1 48 ASP 48 46 ? ? ? A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 SER 2 0 ? ? ? B . n B 1 3 GLY 3 1 ? ? ? B . n B 1 4 SER 4 2 2 SER SER B . n B 1 5 PRO 5 3 3 PRO PRO B . n B 1 6 LEU 6 4 4 LEU LEU B . n B 1 7 ALA 7 5 5 ALA ALA B . n B 1 8 GLN 8 6 6 GLN GLN B . n B 1 9 GLN 9 7 7 GLN GLN B . n B 1 10 ILE 10 8 8 ILE ILE B . n B 1 11 LYS 11 9 9 LYS LYS B . n B 1 12 ASN 12 10 10 ASN ASN B . n B 1 13 ILE 13 11 11 ILE ILE B . n B 1 14 HIS 14 12 12 HIS HIS B . n B 1 15 SER 15 13 13 SER SER B . n B 1 16 PHE 16 14 14 PHE PHE B . n B 1 17 ILE 17 15 15 ILE ILE B . n B 1 18 HIS 18 16 16 HIS HIS B . n B 1 19 GLN 19 17 17 GLN GLN B . n B 1 20 ALA 20 18 18 ALA ALA B . n B 1 21 LYS 21 19 19 LYS LYS B . n B 1 22 ALA 22 20 20 ALA ALA B . n B 1 23 ALA 23 21 21 ALA ALA B . n B 1 24 GLY 24 22 22 GLY GLY B . n B 1 25 ARG 25 23 23 ARG ARG B . n B 1 26 MET 26 24 24 MET MET B . n B 1 27 ASP 27 25 25 ASP ASP B . n B 1 28 GLU 28 26 26 GLU GLU B . n B 1 29 VAL 29 27 27 VAL VAL B . n B 1 30 ARG 30 28 28 ARG ARG B . n B 1 31 THR 31 29 29 THR THR B . n B 1 32 LEU 32 30 30 LEU LEU B . n B 1 33 GLN 33 31 31 GLN GLN B . n B 1 34 GLU 34 32 32 GLU GLU B . n B 1 35 ASN 35 33 33 ASN ASN B . n B 1 36 LEU 36 34 34 LEU LEU B . n B 1 37 GLU 37 35 35 GLU GLU B . n B 1 38 GLN 38 36 36 GLN GLN B . n B 1 39 LEU 39 37 37 LEU LEU B . n B 1 40 MET 40 38 38 MET MET B . n B 1 41 HIS 41 39 39 HIS HIS B . n B 1 42 GLU 42 40 40 GLU GLU B . n B 1 43 TYR 43 41 41 TYR TYR B . n B 1 44 PHE 44 42 42 PHE PHE B . n B 1 45 GLN 45 43 43 GLN GLN B . n B 1 46 GLN 46 44 ? ? ? B . n B 1 47 SER 47 45 ? ? ? B . n B 1 48 ASP 48 46 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 704 704 ZN ZN A . D 3 EDO 1 47 1 EDO EDO A . E 2 ZN 1 703 703 ZN ZN B . F 4 ACT 1 47 1 ACT ACT B . G 5 HOH 1 48 48 HOH HOH A . G 5 HOH 2 49 49 HOH HOH A . G 5 HOH 3 50 50 HOH HOH A . G 5 HOH 4 51 2 HOH HOH A . G 5 HOH 5 52 52 HOH HOH A . G 5 HOH 6 53 3 HOH HOH A . G 5 HOH 7 54 7 HOH HOH A . G 5 HOH 8 55 8 HOH HOH A . G 5 HOH 9 56 56 HOH HOH A . G 5 HOH 10 57 14 HOH HOH A . G 5 HOH 11 58 16 HOH HOH A . G 5 HOH 12 59 17 HOH HOH A . G 5 HOH 13 60 19 HOH HOH A . G 5 HOH 14 61 61 HOH HOH A . G 5 HOH 15 62 20 HOH HOH A . G 5 HOH 16 63 24 HOH HOH A . G 5 HOH 17 64 64 HOH HOH A . G 5 HOH 18 65 25 HOH HOH A . G 5 HOH 19 66 66 HOH HOH A . G 5 HOH 20 67 26 HOH HOH A . G 5 HOH 21 68 68 HOH HOH A . G 5 HOH 22 69 28 HOH HOH A . G 5 HOH 23 70 70 HOH HOH A . G 5 HOH 24 71 29 HOH HOH A . G 5 HOH 25 72 31 HOH HOH A . G 5 HOH 26 73 73 HOH HOH A . G 5 HOH 27 74 32 HOH HOH A . G 5 HOH 28 75 35 HOH HOH A . G 5 HOH 29 76 36 HOH HOH A . G 5 HOH 30 77 38 HOH HOH A . G 5 HOH 31 78 39 HOH HOH A . G 5 HOH 32 79 40 HOH HOH A . G 5 HOH 33 80 80 HOH HOH A . G 5 HOH 34 81 81 HOH HOH A . G 5 HOH 35 82 41 HOH HOH A . G 5 HOH 36 83 83 HOH HOH A . G 5 HOH 37 84 42 HOH HOH A . G 5 HOH 38 85 47 HOH HOH A . G 5 HOH 39 86 86 HOH HOH A . G 5 HOH 40 90 90 HOH HOH A . G 5 HOH 41 91 91 HOH HOH A . G 5 HOH 42 94 94 HOH HOH A . G 5 HOH 43 96 96 HOH HOH A . G 5 HOH 44 98 98 HOH HOH A . G 5 HOH 45 103 103 HOH HOH A . G 5 HOH 46 105 105 HOH HOH A . G 5 HOH 47 106 106 HOH HOH A . G 5 HOH 48 109 109 HOH HOH A . G 5 HOH 49 117 117 HOH HOH A . G 5 HOH 50 121 121 HOH HOH A . G 5 HOH 51 123 123 HOH HOH A . G 5 HOH 52 126 126 HOH HOH A . G 5 HOH 53 130 130 HOH HOH A . G 5 HOH 54 133 133 HOH HOH A . G 5 HOH 55 134 134 HOH HOH A . G 5 HOH 56 138 138 HOH HOH A . G 5 HOH 57 146 146 HOH HOH A . G 5 HOH 58 147 147 HOH HOH A . G 5 HOH 59 151 151 HOH HOH A . G 5 HOH 60 158 158 HOH HOH A . G 5 HOH 61 159 159 HOH HOH A . G 5 HOH 62 163 163 HOH HOH A . G 5 HOH 63 165 165 HOH HOH A . G 5 HOH 64 167 167 HOH HOH A . G 5 HOH 65 170 170 HOH HOH A . G 5 HOH 66 171 171 HOH HOH A . G 5 HOH 67 181 181 HOH HOH A . G 5 HOH 68 183 183 HOH HOH A . G 5 HOH 69 185 185 HOH HOH A . G 5 HOH 70 189 189 HOH HOH A . H 5 HOH 1 48 1 HOH HOH B . H 5 HOH 2 49 4 HOH HOH B . H 5 HOH 3 50 5 HOH HOH B . H 5 HOH 4 51 51 HOH HOH B . H 5 HOH 5 52 6 HOH HOH B . H 5 HOH 6 53 53 HOH HOH B . H 5 HOH 7 54 54 HOH HOH B . H 5 HOH 8 55 55 HOH HOH B . H 5 HOH 9 56 9 HOH HOH B . H 5 HOH 10 57 57 HOH HOH B . H 5 HOH 11 58 58 HOH HOH B . H 5 HOH 12 59 59 HOH HOH B . H 5 HOH 13 60 60 HOH HOH B . H 5 HOH 14 61 10 HOH HOH B . H 5 HOH 15 62 62 HOH HOH B . H 5 HOH 16 63 63 HOH HOH B . H 5 HOH 17 64 11 HOH HOH B . H 5 HOH 18 65 65 HOH HOH B . H 5 HOH 19 66 13 HOH HOH B . H 5 HOH 20 67 15 HOH HOH B . H 5 HOH 21 68 18 HOH HOH B . H 5 HOH 22 69 69 HOH HOH B . H 5 HOH 23 70 21 HOH HOH B . H 5 HOH 24 71 71 HOH HOH B . H 5 HOH 25 72 22 HOH HOH B . H 5 HOH 26 73 23 HOH HOH B . H 5 HOH 27 74 74 HOH HOH B . H 5 HOH 28 75 75 HOH HOH B . H 5 HOH 29 76 76 HOH HOH B . H 5 HOH 30 77 77 HOH HOH B . H 5 HOH 31 78 78 HOH HOH B . H 5 HOH 32 79 79 HOH HOH B . H 5 HOH 33 80 27 HOH HOH B . H 5 HOH 34 81 30 HOH HOH B . H 5 HOH 35 82 33 HOH HOH B . H 5 HOH 36 83 34 HOH HOH B . H 5 HOH 37 84 84 HOH HOH B . H 5 HOH 38 85 85 HOH HOH B . H 5 HOH 39 86 37 HOH HOH B . H 5 HOH 40 87 87 HOH HOH B . H 5 HOH 41 88 88 HOH HOH B . H 5 HOH 42 89 89 HOH HOH B . H 5 HOH 43 90 43 HOH HOH B . H 5 HOH 44 91 44 HOH HOH B . H 5 HOH 45 92 92 HOH HOH B . H 5 HOH 46 93 45 HOH HOH B . H 5 HOH 47 94 46 HOH HOH B . H 5 HOH 48 95 95 HOH HOH B . H 5 HOH 49 99 99 HOH HOH B . H 5 HOH 50 100 100 HOH HOH B . H 5 HOH 51 104 104 HOH HOH B . H 5 HOH 52 108 108 HOH HOH B . H 5 HOH 53 112 112 HOH HOH B . H 5 HOH 54 113 113 HOH HOH B . H 5 HOH 55 116 116 HOH HOH B . H 5 HOH 56 118 118 HOH HOH B . H 5 HOH 57 119 119 HOH HOH B . H 5 HOH 58 120 120 HOH HOH B . H 5 HOH 59 129 129 HOH HOH B . H 5 HOH 60 132 132 HOH HOH B . H 5 HOH 61 136 136 HOH HOH B . H 5 HOH 62 142 142 HOH HOH B . H 5 HOH 63 144 144 HOH HOH B . H 5 HOH 64 150 150 HOH HOH B . H 5 HOH 65 152 152 HOH HOH B . H 5 HOH 66 154 154 HOH HOH B . H 5 HOH 67 156 156 HOH HOH B . H 5 HOH 68 160 160 HOH HOH B . H 5 HOH 69 162 162 HOH HOH B . H 5 HOH 70 164 164 HOH HOH B . H 5 HOH 71 166 166 HOH HOH B . H 5 HOH 72 172 172 HOH HOH B . H 5 HOH 73 182 182 HOH HOH B . H 5 HOH 74 184 184 HOH HOH B . H 5 HOH 75 186 186 HOH HOH B . H 5 HOH 76 187 187 HOH HOH B . H 5 HOH 77 188 188 HOH HOH B . H 5 HOH 78 190 190 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1590 ? 1 MORE -90 ? 1 'SSA (A^2)' 5910 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 14 ? A HIS 12 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 NE2 ? A HIS 18 ? A HIS 16 ? 1_555 108.0 ? 2 NE2 ? A HIS 14 ? A HIS 12 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 OE2 ? B GLU 37 ? B GLU 35 ? 1_555 123.4 ? 3 NE2 ? A HIS 18 ? A HIS 16 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 OE2 ? B GLU 37 ? B GLU 35 ? 1_555 103.4 ? 4 NE2 ? A HIS 14 ? A HIS 12 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 ND1 ? B HIS 41 ? B HIS 39 ? 1_555 110.5 ? 5 NE2 ? A HIS 18 ? A HIS 16 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 ND1 ? B HIS 41 ? B HIS 39 ? 1_555 108.9 ? 6 OE2 ? B GLU 37 ? B GLU 35 ? 1_555 ZN ? E ZN . ? B ZN 703 ? 1_555 ND1 ? B HIS 41 ? B HIS 39 ? 1_555 101.8 ? 7 OE2 ? A GLU 37 ? A GLU 35 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 ND1 ? A HIS 41 ? A HIS 39 ? 1_555 101.5 ? 8 OE2 ? A GLU 37 ? A GLU 35 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 NE2 ? B HIS 14 ? B HIS 12 ? 1_555 124.6 ? 9 ND1 ? A HIS 41 ? A HIS 39 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 NE2 ? B HIS 14 ? B HIS 12 ? 1_555 112.4 ? 10 OE2 ? A GLU 37 ? A GLU 35 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 NE2 ? B HIS 18 ? B HIS 16 ? 1_555 104.6 ? 11 ND1 ? A HIS 41 ? A HIS 39 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 NE2 ? B HIS 18 ? B HIS 16 ? 1_555 106.4 ? 12 NE2 ? B HIS 14 ? B HIS 12 ? 1_555 ZN ? C ZN . ? A ZN 704 ? 1_555 NE2 ? B HIS 18 ? B HIS 16 ? 1_555 105.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-11 2 'Structure model' 1 1 2012-03-07 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_927)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HE22 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 17 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HO1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 EDO _pdbx_validate_close_contact.auth_seq_id_2 47 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 B _pdbx_validate_close_contact.dist 1.33 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 23 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -103.01 _pdbx_validate_torsion.psi 73.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A SER 45 ? A SER 47 4 1 Y 1 A ASP 46 ? A ASP 48 5 1 Y 1 B GLY -1 ? B GLY 1 6 1 Y 1 B SER 0 ? B SER 2 7 1 Y 1 B GLY 1 ? B GLY 3 8 1 Y 1 B GLN 44 ? B GLN 46 9 1 Y 1 B SER 45 ? B SER 47 10 1 Y 1 B ASP 46 ? B ASP 48 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 EDO C1 C N N 81 EDO O1 O N N 82 EDO C2 C N N 83 EDO O2 O N N 84 EDO H11 H N N 85 EDO H12 H N N 86 EDO HO1 H N N 87 EDO H21 H N N 88 EDO H22 H N N 89 EDO HO2 H N N 90 GLN N N N N 91 GLN CA C N S 92 GLN C C N N 93 GLN O O N N 94 GLN CB C N N 95 GLN CG C N N 96 GLN CD C N N 97 GLN OE1 O N N 98 GLN NE2 N N N 99 GLN OXT O N N 100 GLN H H N N 101 GLN H2 H N N 102 GLN HA H N N 103 GLN HB2 H N N 104 GLN HB3 H N N 105 GLN HG2 H N N 106 GLN HG3 H N N 107 GLN HE21 H N N 108 GLN HE22 H N N 109 GLN HXT H N N 110 GLU N N N N 111 GLU CA C N S 112 GLU C C N N 113 GLU O O N N 114 GLU CB C N N 115 GLU CG C N N 116 GLU CD C N N 117 GLU OE1 O N N 118 GLU OE2 O N N 119 GLU OXT O N N 120 GLU H H N N 121 GLU H2 H N N 122 GLU HA H N N 123 GLU HB2 H N N 124 GLU HB3 H N N 125 GLU HG2 H N N 126 GLU HG3 H N N 127 GLU HE2 H N N 128 GLU HXT H N N 129 GLY N N N N 130 GLY CA C N N 131 GLY C C N N 132 GLY O O N N 133 GLY OXT O N N 134 GLY H H N N 135 GLY H2 H N N 136 GLY HA2 H N N 137 GLY HA3 H N N 138 GLY HXT H N N 139 HIS N N N N 140 HIS CA C N S 141 HIS C C N N 142 HIS O O N N 143 HIS CB C N N 144 HIS CG C Y N 145 HIS ND1 N Y N 146 HIS CD2 C Y N 147 HIS CE1 C Y N 148 HIS NE2 N Y N 149 HIS OXT O N N 150 HIS H H N N 151 HIS H2 H N N 152 HIS HA H N N 153 HIS HB2 H N N 154 HIS HB3 H N N 155 HIS HD1 H N N 156 HIS HD2 H N N 157 HIS HE1 H N N 158 HIS HE2 H N N 159 HIS HXT H N N 160 HOH O O N N 161 HOH H1 H N N 162 HOH H2 H N N 163 ILE N N N N 164 ILE CA C N S 165 ILE C C N N 166 ILE O O N N 167 ILE CB C N S 168 ILE CG1 C N N 169 ILE CG2 C N N 170 ILE CD1 C N N 171 ILE OXT O N N 172 ILE H H N N 173 ILE H2 H N N 174 ILE HA H N N 175 ILE HB H N N 176 ILE HG12 H N N 177 ILE HG13 H N N 178 ILE HG21 H N N 179 ILE HG22 H N N 180 ILE HG23 H N N 181 ILE HD11 H N N 182 ILE HD12 H N N 183 ILE HD13 H N N 184 ILE HXT H N N 185 LEU N N N N 186 LEU CA C N S 187 LEU C C N N 188 LEU O O N N 189 LEU CB C N N 190 LEU CG C N N 191 LEU CD1 C N N 192 LEU CD2 C N N 193 LEU OXT O N N 194 LEU H H N N 195 LEU H2 H N N 196 LEU HA H N N 197 LEU HB2 H N N 198 LEU HB3 H N N 199 LEU HG H N N 200 LEU HD11 H N N 201 LEU HD12 H N N 202 LEU HD13 H N N 203 LEU HD21 H N N 204 LEU HD22 H N N 205 LEU HD23 H N N 206 LEU HXT H N N 207 LYS N N N N 208 LYS CA C N S 209 LYS C C N N 210 LYS O O N N 211 LYS CB C N N 212 LYS CG C N N 213 LYS CD C N N 214 LYS CE C N N 215 LYS NZ N N N 216 LYS OXT O N N 217 LYS H H N N 218 LYS H2 H N N 219 LYS HA H N N 220 LYS HB2 H N N 221 LYS HB3 H N N 222 LYS HG2 H N N 223 LYS HG3 H N N 224 LYS HD2 H N N 225 LYS HD3 H N N 226 LYS HE2 H N N 227 LYS HE3 H N N 228 LYS HZ1 H N N 229 LYS HZ2 H N N 230 LYS HZ3 H N N 231 LYS HXT H N N 232 MET N N N N 233 MET CA C N S 234 MET C C N N 235 MET O O N N 236 MET CB C N N 237 MET CG C N N 238 MET SD S N N 239 MET CE C N N 240 MET OXT O N N 241 MET H H N N 242 MET H2 H N N 243 MET HA H N N 244 MET HB2 H N N 245 MET HB3 H N N 246 MET HG2 H N N 247 MET HG3 H N N 248 MET HE1 H N N 249 MET HE2 H N N 250 MET HE3 H N N 251 MET HXT H N N 252 PHE N N N N 253 PHE CA C N S 254 PHE C C N N 255 PHE O O N N 256 PHE CB C N N 257 PHE CG C Y N 258 PHE CD1 C Y N 259 PHE CD2 C Y N 260 PHE CE1 C Y N 261 PHE CE2 C Y N 262 PHE CZ C Y N 263 PHE OXT O N N 264 PHE H H N N 265 PHE H2 H N N 266 PHE HA H N N 267 PHE HB2 H N N 268 PHE HB3 H N N 269 PHE HD1 H N N 270 PHE HD2 H N N 271 PHE HE1 H N N 272 PHE HE2 H N N 273 PHE HZ H N N 274 PHE HXT H N N 275 PRO N N N N 276 PRO CA C N S 277 PRO C C N N 278 PRO O O N N 279 PRO CB C N N 280 PRO CG C N N 281 PRO CD C N N 282 PRO OXT O N N 283 PRO H H N N 284 PRO HA H N N 285 PRO HB2 H N N 286 PRO HB3 H N N 287 PRO HG2 H N N 288 PRO HG3 H N N 289 PRO HD2 H N N 290 PRO HD3 H N N 291 PRO HXT H N N 292 SER N N N N 293 SER CA C N S 294 SER C C N N 295 SER O O N N 296 SER CB C N N 297 SER OG O N N 298 SER OXT O N N 299 SER H H N N 300 SER H2 H N N 301 SER HA H N N 302 SER HB2 H N N 303 SER HB3 H N N 304 SER HG H N N 305 SER HXT H N N 306 THR N N N N 307 THR CA C N S 308 THR C C N N 309 THR O O N N 310 THR CB C N R 311 THR OG1 O N N 312 THR CG2 C N N 313 THR OXT O N N 314 THR H H N N 315 THR H2 H N N 316 THR HA H N N 317 THR HB H N N 318 THR HG1 H N N 319 THR HG21 H N N 320 THR HG22 H N N 321 THR HG23 H N N 322 THR HXT H N N 323 TYR N N N N 324 TYR CA C N S 325 TYR C C N N 326 TYR O O N N 327 TYR CB C N N 328 TYR CG C Y N 329 TYR CD1 C Y N 330 TYR CD2 C Y N 331 TYR CE1 C Y N 332 TYR CE2 C Y N 333 TYR CZ C Y N 334 TYR OH O N N 335 TYR OXT O N N 336 TYR H H N N 337 TYR H2 H N N 338 TYR HA H N N 339 TYR HB2 H N N 340 TYR HB3 H N N 341 TYR HD1 H N N 342 TYR HD2 H N N 343 TYR HE1 H N N 344 TYR HE2 H N N 345 TYR HH H N N 346 TYR HXT H N N 347 VAL N N N N 348 VAL CA C N S 349 VAL C C N N 350 VAL O O N N 351 VAL CB C N N 352 VAL CG1 C N N 353 VAL CG2 C N N 354 VAL OXT O N N 355 VAL H H N N 356 VAL H2 H N N 357 VAL HA H N N 358 VAL HB H N N 359 VAL HG11 H N N 360 VAL HG12 H N N 361 VAL HG13 H N N 362 VAL HG21 H N N 363 VAL HG22 H N N 364 VAL HG23 H N N 365 VAL HXT H N N 366 ZN ZN ZN N N 367 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 EDO C1 O1 sing N N 76 EDO C1 C2 sing N N 77 EDO C1 H11 sing N N 78 EDO C1 H12 sing N N 79 EDO O1 HO1 sing N N 80 EDO C2 O2 sing N N 81 EDO C2 H21 sing N N 82 EDO C2 H22 sing N N 83 EDO O2 HO2 sing N N 84 GLN N CA sing N N 85 GLN N H sing N N 86 GLN N H2 sing N N 87 GLN CA C sing N N 88 GLN CA CB sing N N 89 GLN CA HA sing N N 90 GLN C O doub N N 91 GLN C OXT sing N N 92 GLN CB CG sing N N 93 GLN CB HB2 sing N N 94 GLN CB HB3 sing N N 95 GLN CG CD sing N N 96 GLN CG HG2 sing N N 97 GLN CG HG3 sing N N 98 GLN CD OE1 doub N N 99 GLN CD NE2 sing N N 100 GLN NE2 HE21 sing N N 101 GLN NE2 HE22 sing N N 102 GLN OXT HXT sing N N 103 GLU N CA sing N N 104 GLU N H sing N N 105 GLU N H2 sing N N 106 GLU CA C sing N N 107 GLU CA CB sing N N 108 GLU CA HA sing N N 109 GLU C O doub N N 110 GLU C OXT sing N N 111 GLU CB CG sing N N 112 GLU CB HB2 sing N N 113 GLU CB HB3 sing N N 114 GLU CG CD sing N N 115 GLU CG HG2 sing N N 116 GLU CG HG3 sing N N 117 GLU CD OE1 doub N N 118 GLU CD OE2 sing N N 119 GLU OE2 HE2 sing N N 120 GLU OXT HXT sing N N 121 GLY N CA sing N N 122 GLY N H sing N N 123 GLY N H2 sing N N 124 GLY CA C sing N N 125 GLY CA HA2 sing N N 126 GLY CA HA3 sing N N 127 GLY C O doub N N 128 GLY C OXT sing N N 129 GLY OXT HXT sing N N 130 HIS N CA sing N N 131 HIS N H sing N N 132 HIS N H2 sing N N 133 HIS CA C sing N N 134 HIS CA CB sing N N 135 HIS CA HA sing N N 136 HIS C O doub N N 137 HIS C OXT sing N N 138 HIS CB CG sing N N 139 HIS CB HB2 sing N N 140 HIS CB HB3 sing N N 141 HIS CG ND1 sing Y N 142 HIS CG CD2 doub Y N 143 HIS ND1 CE1 doub Y N 144 HIS ND1 HD1 sing N N 145 HIS CD2 NE2 sing Y N 146 HIS CD2 HD2 sing N N 147 HIS CE1 NE2 sing Y N 148 HIS CE1 HE1 sing N N 149 HIS NE2 HE2 sing N N 150 HIS OXT HXT sing N N 151 HOH O H1 sing N N 152 HOH O H2 sing N N 153 ILE N CA sing N N 154 ILE N H sing N N 155 ILE N H2 sing N N 156 ILE CA C sing N N 157 ILE CA CB sing N N 158 ILE CA HA sing N N 159 ILE C O doub N N 160 ILE C OXT sing N N 161 ILE CB CG1 sing N N 162 ILE CB CG2 sing N N 163 ILE CB HB sing N N 164 ILE CG1 CD1 sing N N 165 ILE CG1 HG12 sing N N 166 ILE CG1 HG13 sing N N 167 ILE CG2 HG21 sing N N 168 ILE CG2 HG22 sing N N 169 ILE CG2 HG23 sing N N 170 ILE CD1 HD11 sing N N 171 ILE CD1 HD12 sing N N 172 ILE CD1 HD13 sing N N 173 ILE OXT HXT sing N N 174 LEU N CA sing N N 175 LEU N H sing N N 176 LEU N H2 sing N N 177 LEU CA C sing N N 178 LEU CA CB sing N N 179 LEU CA HA sing N N 180 LEU C O doub N N 181 LEU C OXT sing N N 182 LEU CB CG sing N N 183 LEU CB HB2 sing N N 184 LEU CB HB3 sing N N 185 LEU CG CD1 sing N N 186 LEU CG CD2 sing N N 187 LEU CG HG sing N N 188 LEU CD1 HD11 sing N N 189 LEU CD1 HD12 sing N N 190 LEU CD1 HD13 sing N N 191 LEU CD2 HD21 sing N N 192 LEU CD2 HD22 sing N N 193 LEU CD2 HD23 sing N N 194 LEU OXT HXT sing N N 195 LYS N CA sing N N 196 LYS N H sing N N 197 LYS N H2 sing N N 198 LYS CA C sing N N 199 LYS CA CB sing N N 200 LYS CA HA sing N N 201 LYS C O doub N N 202 LYS C OXT sing N N 203 LYS CB CG sing N N 204 LYS CB HB2 sing N N 205 LYS CB HB3 sing N N 206 LYS CG CD sing N N 207 LYS CG HG2 sing N N 208 LYS CG HG3 sing N N 209 LYS CD CE sing N N 210 LYS CD HD2 sing N N 211 LYS CD HD3 sing N N 212 LYS CE NZ sing N N 213 LYS CE HE2 sing N N 214 LYS CE HE3 sing N N 215 LYS NZ HZ1 sing N N 216 LYS NZ HZ2 sing N N 217 LYS NZ HZ3 sing N N 218 LYS OXT HXT sing N N 219 MET N CA sing N N 220 MET N H sing N N 221 MET N H2 sing N N 222 MET CA C sing N N 223 MET CA CB sing N N 224 MET CA HA sing N N 225 MET C O doub N N 226 MET C OXT sing N N 227 MET CB CG sing N N 228 MET CB HB2 sing N N 229 MET CB HB3 sing N N 230 MET CG SD sing N N 231 MET CG HG2 sing N N 232 MET CG HG3 sing N N 233 MET SD CE sing N N 234 MET CE HE1 sing N N 235 MET CE HE2 sing N N 236 MET CE HE3 sing N N 237 MET OXT HXT sing N N 238 PHE N CA sing N N 239 PHE N H sing N N 240 PHE N H2 sing N N 241 PHE CA C sing N N 242 PHE CA CB sing N N 243 PHE CA HA sing N N 244 PHE C O doub N N 245 PHE C OXT sing N N 246 PHE CB CG sing N N 247 PHE CB HB2 sing N N 248 PHE CB HB3 sing N N 249 PHE CG CD1 doub Y N 250 PHE CG CD2 sing Y N 251 PHE CD1 CE1 sing Y N 252 PHE CD1 HD1 sing N N 253 PHE CD2 CE2 doub Y N 254 PHE CD2 HD2 sing N N 255 PHE CE1 CZ doub Y N 256 PHE CE1 HE1 sing N N 257 PHE CE2 CZ sing Y N 258 PHE CE2 HE2 sing N N 259 PHE CZ HZ sing N N 260 PHE OXT HXT sing N N 261 PRO N CA sing N N 262 PRO N CD sing N N 263 PRO N H sing N N 264 PRO CA C sing N N 265 PRO CA CB sing N N 266 PRO CA HA sing N N 267 PRO C O doub N N 268 PRO C OXT sing N N 269 PRO CB CG sing N N 270 PRO CB HB2 sing N N 271 PRO CB HB3 sing N N 272 PRO CG CD sing N N 273 PRO CG HG2 sing N N 274 PRO CG HG3 sing N N 275 PRO CD HD2 sing N N 276 PRO CD HD3 sing N N 277 PRO OXT HXT sing N N 278 SER N CA sing N N 279 SER N H sing N N 280 SER N H2 sing N N 281 SER CA C sing N N 282 SER CA CB sing N N 283 SER CA HA sing N N 284 SER C O doub N N 285 SER C OXT sing N N 286 SER CB OG sing N N 287 SER CB HB2 sing N N 288 SER CB HB3 sing N N 289 SER OG HG sing N N 290 SER OXT HXT sing N N 291 THR N CA sing N N 292 THR N H sing N N 293 THR N H2 sing N N 294 THR CA C sing N N 295 THR CA CB sing N N 296 THR CA HA sing N N 297 THR C O doub N N 298 THR C OXT sing N N 299 THR CB OG1 sing N N 300 THR CB CG2 sing N N 301 THR CB HB sing N N 302 THR OG1 HG1 sing N N 303 THR CG2 HG21 sing N N 304 THR CG2 HG22 sing N N 305 THR CG2 HG23 sing N N 306 THR OXT HXT sing N N 307 TYR N CA sing N N 308 TYR N H sing N N 309 TYR N H2 sing N N 310 TYR CA C sing N N 311 TYR CA CB sing N N 312 TYR CA HA sing N N 313 TYR C O doub N N 314 TYR C OXT sing N N 315 TYR CB CG sing N N 316 TYR CB HB2 sing N N 317 TYR CB HB3 sing N N 318 TYR CG CD1 doub Y N 319 TYR CG CD2 sing Y N 320 TYR CD1 CE1 sing Y N 321 TYR CD1 HD1 sing N N 322 TYR CD2 CE2 doub Y N 323 TYR CD2 HD2 sing N N 324 TYR CE1 CZ doub Y N 325 TYR CE1 HE1 sing N N 326 TYR CE2 CZ sing Y N 327 TYR CE2 HE2 sing N N 328 TYR CZ OH sing N N 329 TYR OH HH sing N N 330 TYR OXT HXT sing N N 331 VAL N CA sing N N 332 VAL N H sing N N 333 VAL N H2 sing N N 334 VAL CA C sing N N 335 VAL CA CB sing N N 336 VAL CA HA sing N N 337 VAL C O doub N N 338 VAL C OXT sing N N 339 VAL CB CG1 sing N N 340 VAL CB CG2 sing N N 341 VAL CB HB sing N N 342 VAL CG1 HG11 sing N N 343 VAL CG1 HG12 sing N N 344 VAL CG1 HG13 sing N N 345 VAL CG2 HG21 sing N N 346 VAL CG2 HG22 sing N N 347 VAL CG2 HG23 sing N N 348 VAL OXT HXT sing N N 349 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 1,2-ETHANEDIOL EDO 4 'ACETATE ION' ACT 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YZM _pdbx_initial_refinement_model.details 'PDB ENTRY 1YZM' #