HEADER LYASE 10-DEC-11 3V1V TITLE CRYSTAL STRUCTURE OF 2-METHYLISOBORNEOL SYNTHASE FROM STREPTOMYCES TITLE 2 COELICOLOR A3(2) IN COMPLEX WITH MG2+ AND GERANYL-S-THIOLODIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYLISOBORNEOL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-440; COMPND 5 SYNONYM: 2-MIB SYNTHASE; COMPND 6 EC: 4.2.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 GENE: SC1A4.08, SCBAC12C8.01, SCO7700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLASS I TERPENOID CYCLASE FOLD, DDXXXXD MOTIF, NDXXSXXXE MOTIF, 2- KEYWDS 2 METHYLISOBORNEOL BIOSYNTHESIS, BIOSYNTHESIS OF 2-METHYLISOBORNEOL, KEYWDS 3 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KOKSAL,D.W.CHRISTIANSON REVDAT 3 28-FEB-24 3V1V 1 REMARK SEQADV LINK REVDAT 2 25-APR-12 3V1V 1 JRNL REVDAT 1 11-APR-12 3V1V 0 JRNL AUTH M.KOKSAL,W.K.CHOU,D.E.CANE,D.W.CHRISTIANSON JRNL TITL STRUCTURE OF 2-METHYLISOBORNEOL SYNTHASE FROM STREPTOMYCES JRNL TITL 2 COELICOLOR AND IMPLICATIONS FOR THE CYCLIZATION OF A JRNL TITL 3 NONCANONICAL C-METHYLATED MONOTERPENOID SUBSTRATE. JRNL REF BIOCHEMISTRY V. 51 3011 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22455514 JRNL DOI 10.1021/BI201827A REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 48241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9870 - 4.3370 0.99 3643 161 0.1647 0.1840 REMARK 3 2 4.3370 - 3.4430 1.00 3467 145 0.1328 0.1360 REMARK 3 3 3.4430 - 3.0079 0.99 3402 150 0.1452 0.1549 REMARK 3 4 3.0079 - 2.7330 0.99 3406 134 0.1481 0.2003 REMARK 3 5 2.7330 - 2.5371 0.99 3359 149 0.1410 0.1755 REMARK 3 6 2.5371 - 2.3875 0.99 3344 133 0.1402 0.1645 REMARK 3 7 2.3875 - 2.2680 0.98 3293 146 0.1366 0.1596 REMARK 3 8 2.2680 - 2.1693 0.98 3299 141 0.1379 0.1789 REMARK 3 9 2.1693 - 2.0858 0.97 3263 132 0.1426 0.1753 REMARK 3 10 2.0858 - 2.0138 0.97 3262 147 0.1555 0.1866 REMARK 3 11 2.0138 - 1.9508 0.96 3209 135 0.1593 0.1908 REMARK 3 12 1.9508 - 1.8951 0.96 3213 126 0.1599 0.1959 REMARK 3 13 1.8951 - 1.8452 0.93 3123 134 0.1645 0.1931 REMARK 3 14 1.8452 - 1.8001 0.90 2993 132 0.1761 0.2166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 44.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51430 REMARK 3 B22 (A**2) : -1.51430 REMARK 3 B33 (A**2) : 3.02860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.029 2677 REMARK 3 ANGLE : 2.191 3657 REMARK 3 CHIRALITY : 0.181 379 REMARK 3 PLANARITY : 0.013 483 REMARK 3 DIHEDRAL : 19.067 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUOTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS (PH 6.5), 25% REMARK 280 POLYETHYLENE GLYCOL 3350, 200 MM (NH4)2SO4, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.87100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.30650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.43550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.87100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.43550 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.30650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.43550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 835 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 838 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 VAL A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 VAL A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 PHE A 42 REMARK 465 LEU A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 LEU A 46 REMARK 465 HIS A 47 REMARK 465 PRO A 48 REMARK 465 PRO A 49 REMARK 465 VAL A 50 REMARK 465 THR A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 PRO A 55 REMARK 465 ALA A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 PRO A 59 REMARK 465 PRO A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 ASN A 67 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 THR A 71 REMARK 465 VAL A 72 REMARK 465 THR A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 SER A 76 REMARK 465 VAL A 77 REMARK 465 LEU A 78 REMARK 465 GLN A 79 REMARK 465 ARG A 80 REMARK 465 ILE A 81 REMARK 465 LEU A 82 REMARK 465 ARG A 83 REMARK 465 GLY A 84 REMARK 465 PRO A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 THR A 91 REMARK 465 SER A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 PRO A 95 REMARK 465 ALA A 96 REMARK 465 VAL A 97 REMARK 465 ARG A 98 REMARK 465 TYR A 99 REMARK 465 GLY A 100 REMARK 465 ARG A 101 REMARK 465 GLN A 102 REMARK 465 PRO A 103 REMARK 465 GLY A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 ALA A 109 REMARK 465 SER A 110 REMARK 465 ALA A 111 REMARK 465 PRO A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 TRP A 157 REMARK 465 GLU A 158 REMARK 465 ASP A 203 REMARK 465 HIS A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 733 O HOH A 740 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 162 C ASP A 162 O 0.118 REMARK 500 SER A 165 CB SER A 165 OG 0.083 REMARK 500 GLU A 193 CB GLU A 193 CG 0.176 REMARK 500 GLU A 193 CB GLU A 193 CG 0.169 REMARK 500 GLU A 193 CG GLU A 193 CD 0.090 REMARK 500 GLU A 193 CG GLU A 193 CD 0.094 REMARK 500 GLU A 281 CD GLU A 281 OE2 -0.077 REMARK 500 TYR A 348 CZ TYR A 348 CE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 CYS A 199 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 329 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 332 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 227 -159.93 -154.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 197 OD1 REMARK 620 2 GST A 511 O3B 94.2 REMARK 620 3 HOH A 786 O 92.8 90.6 REMARK 620 4 HOH A 788 O 169.4 95.0 81.8 REMARK 620 5 HOH A 790 O 94.8 83.7 170.8 91.5 REMARK 620 6 HOH A 794 O 84.6 173.0 96.3 86.9 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 345 OD1 REMARK 620 2 SER A 349 OG 87.9 REMARK 620 3 GLU A 353 OE2 165.9 86.6 REMARK 620 4 GST A 511 O2A 94.3 89.6 98.6 REMARK 620 5 GST A 511 O2B 90.2 178.0 95.1 91.3 REMARK 620 6 HOH A 785 O 88.4 81.8 78.1 170.9 97.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GST A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 521 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V1X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYLISOBORNEOL SYNTHASE FROM STREPTOMYCES REMARK 900 COELICOLOR A3(2) IN COMPLEX WITH MG2+ AND 2-FLUOROGERANYL REMARK 900 DIPHOSPHATE DBREF 3V1V A 29 440 UNP Q9F1Y6 MIBS_STRCO 29 440 SEQADV 3V1V MET A 8 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V GLY A 9 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V SER A 10 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V SER A 11 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 12 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 13 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 14 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 15 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 16 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 17 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V SER A 18 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V SER A 19 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V GLY A 20 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V LEU A 21 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V VAL A 22 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V PRO A 23 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V ARG A 24 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V GLY A 25 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V SER A 26 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V HIS A 27 UNP Q9F1Y6 EXPRESSION TAG SEQADV 3V1V MET A 28 UNP Q9F1Y6 EXPRESSION TAG SEQRES 1 A 433 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 433 LEU VAL PRO ARG GLY SER HIS MET VAL ILE PRO SER ALA SEQRES 3 A 433 SER VAL THR SER ALA ALA SER ASP PHE LEU ALA ALA LEU SEQRES 4 A 433 HIS PRO PRO VAL THR VAL PRO ASP PRO ALA PRO PRO PRO SEQRES 5 A 433 PRO PRO ALA PRO ALA ALA GLY ASN PRO PRO ASP THR VAL SEQRES 6 A 433 THR GLY ASP SER VAL LEU GLN ARG ILE LEU ARG GLY PRO SEQRES 7 A 433 THR GLY PRO GLY THR THR SER LEU ALA PRO ALA VAL ARG SEQRES 8 A 433 TYR GLY ARG GLN PRO GLY PRO GLU ALA PRO ALA SER ALA SEQRES 9 A 433 PRO PRO ALA ALA GLY ARG ALA VAL PRO GLY LEU TYR HIS SEQRES 10 A 433 HIS PRO VAL PRO GLU PRO ASP PRO VAL ARG VAL GLU GLU SEQRES 11 A 433 VAL SER ARG ARG ILE LYS ARG TRP ALA GLU ASP GLU VAL SEQRES 12 A 433 GLN LEU TYR PRO GLU GLU TRP GLU GLY GLN PHE ASP GLY SEQRES 13 A 433 PHE SER VAL GLY ARG TYR MET VAL GLY CYS HIS PRO ASP SEQRES 14 A 433 ALA PRO THR VAL ASP HIS LEU MET LEU ALA THR ARG LEU SEQRES 15 A 433 MET VAL ALA GLU ASN ALA VAL ASP ASP CYS TYR CYS GLU SEQRES 16 A 433 ASP HIS GLY GLY SER PRO VAL GLY LEU GLY GLY ARG LEU SEQRES 17 A 433 LEU LEU ALA HIS THR ALA ILE ASP HIS PHE HIS SER THR SEQRES 18 A 433 ALA GLU TYR THR PRO THR TRP GLN ALA SER LEU ALA ALA SEQRES 19 A 433 ASP ALA PRO ARG ARG ALA TYR ASP SER ALA MET GLY TYR SEQRES 20 A 433 PHE VAL ARG ALA ALA THR PRO SER GLN SER ASP ARG TYR SEQRES 21 A 433 ARG HIS ASP MET ALA ARG LEU HIS LEU GLY TYR LEU ALA SEQRES 22 A 433 GLU GLY ALA TRP ALA GLN THR GLY HIS VAL PRO GLU VAL SEQRES 23 A 433 TRP GLU TYR LEU ALA MET ARG GLN PHE ASN ASN PHE ARG SEQRES 24 A 433 PRO CYS PRO THR ILE THR ASP THR VAL GLY GLY TYR GLU SEQRES 25 A 433 LEU PRO ALA ASP LEU HIS ALA ARG PRO ASP MET GLN ARG SEQRES 26 A 433 VAL ILE ALA LEU ALA GLY ASN ALA THR THR ILE VAL ASN SEQRES 27 A 433 ASP LEU TYR SER TYR THR LYS GLU LEU ASN SER PRO GLY SEQRES 28 A 433 ARG HIS LEU ASN LEU PRO VAL VAL ILE ALA GLU ARG GLU SEQRES 29 A 433 GLN LEU CYS GLU ARG ASP ALA TYR LEU LYS ALA VAL GLU SEQRES 30 A 433 VAL HIS ASN GLU LEU GLN HIS SER PHE GLU ALA ALA ALA SEQRES 31 A 433 ALA ASP LEU ALA GLU ALA CYS PRO LEU PRO PRO VAL LEU SEQRES 32 A 433 ARG PHE LEU ARG GLY VAL ALA ALA TRP VAL ASP GLY ASN SEQRES 33 A 433 HIS ASP TRP HIS ARG THR ASN THR TYR ARG TYR SER LEU SEQRES 34 A 433 PRO ASP PHE TRP HET MG A 501 1 HET MG A 502 1 HET GST A 511 19 HET GOL A 521 7 HETNAM MG MAGNESIUM ION HETNAM GST GERANYL S-THIOLODIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GST S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGEN HETSYN 2 GST THIODIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 GST C10 H20 O6 P2 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *426(H2 O) HELIX 1 1 ASP A 131 GLU A 149 1 19 HELIX 2 2 ASP A 162 HIS A 174 1 13 HELIX 3 3 THR A 179 CYS A 201 1 23 HELIX 4 4 GLY A 210 THR A 220 1 11 HELIX 5 5 TYR A 231 LEU A 239 1 9 HELIX 6 6 ASP A 242 ALA A 259 1 18 HELIX 7 7 THR A 260 THR A 287 1 28 HELIX 8 8 GLU A 292 ASN A 303 1 12 HELIX 9 9 CYS A 308 THR A 310 5 3 HELIX 10 10 ILE A 311 GLY A 317 1 7 HELIX 11 11 PRO A 321 ALA A 326 1 6 HELIX 12 12 ARG A 327 SER A 349 1 23 HELIX 13 13 SER A 349 LEU A 354 1 6 HELIX 14 14 ASN A 362 GLN A 372 1 11 HELIX 15 15 CYS A 374 CYS A 404 1 31 HELIX 16 16 LEU A 406 ASN A 430 1 25 LINK OD1AASP A 197 MG MG A 502 1555 1555 2.34 LINK OD1 ASN A 345 MG MG A 501 1555 1555 2.21 LINK OG SER A 349 MG MG A 501 1555 1555 2.31 LINK OE2 GLU A 353 MG MG A 501 1555 1555 2.05 LINK MG MG A 501 O2A GST A 511 1555 1555 2.09 LINK MG MG A 501 O2B GST A 511 1555 1555 2.11 LINK MG MG A 501 O HOH A 785 1555 1555 2.23 LINK MG MG A 502 O3B GST A 511 1555 1555 2.19 LINK MG MG A 502 O HOH A 786 1555 1555 2.09 LINK MG MG A 502 O HOH A 788 1555 1555 2.20 LINK MG MG A 502 O HOH A 790 1555 1555 2.31 LINK MG MG A 502 O HOH A 794 1555 1555 2.20 SITE 1 AC1 5 ASN A 345 SER A 349 GLU A 353 GST A 511 SITE 2 AC1 5 HOH A 785 SITE 1 AC2 6 ASP A 197 GST A 511 HOH A 786 HOH A 788 SITE 2 AC2 6 HOH A 790 HOH A 794 SITE 1 AC3 22 MET A 190 GLU A 193 ASP A 197 LEU A 274 SITE 2 AC3 22 ARG A 300 ASN A 304 PHE A 305 CYS A 308 SITE 3 AC3 22 ASN A 345 SER A 349 LYS A 352 GLU A 353 SITE 4 AC3 22 ARG A 433 TYR A 434 MG A 501 MG A 502 SITE 5 AC3 22 HOH A 786 HOH A 787 HOH A 790 HOH A 796 SITE 6 AC3 22 HOH A 797 HOH A 804 SITE 1 AC4 7 ARG A 134 ARG A 257 ALA A 258 HOH A 475 SITE 2 AC4 7 HOH A 513 HOH A 650 HOH A 856 CRYST1 99.392 99.392 105.742 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009457 0.00000