HEADER TRANSFERASE 12-DEC-11 3V2B TITLE HUMAN POLY(ADP-RIBOSE) POLYMERASE 15 (ARTD7, BAL3), MACRO DOMAIN 2 IN TITLE 2 COMPLEX WITH ADENOSINE-5-DIPHOSPHORIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRO DOMAIN 2; COMPND 5 SYNONYM: PARP-15, B-AGGRESSIVE LYMPHOMA PROTEIN 3; COMPND 6 EC: 2.4.2.30; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAL3, PARP15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, POLY (ADP- KEYWDS 2 RIBOSE) POLYMERASE, ADP-RIBOSE, BAL3, B-AGGRESSIVE LYMPHOMA PROTEIN KEYWDS 3 3, GLYCOSYLTRANSFERASE, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, TRANSFERASE, ADP-RIBOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 A.KALLAS,T.KOTENYOVA,A.KOTZCSH,P.KRAULIS,T.K.NIELSEN,P.NORDLUND, AUTHOR 4 T.NYMAN,C.PERSSON,A.K.ROOS,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL, AUTHOR 5 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, AUTHOR 6 H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-SEP-23 3V2B 1 REMARK SEQADV HETSYN REVDAT 4 20-MAR-13 3V2B 1 JRNL REVDAT 3 13-MAR-13 3V2B 1 JRNL REVDAT 2 06-FEB-13 3V2B 1 SPRSDE REVDAT 1 21-DEC-11 3V2B 0 SPRSDE 06-FEB-13 3V2B 3KH6 JRNL AUTH A.H.FORST,T.KARLBERG,N.HERZOG,A.G.THORSELL,A.GROSS, JRNL AUTH 2 K.L.FEIJS,P.VERHEUGD,P.KURSULA,B.NIJMEIJER,E.KREMMER, JRNL AUTH 3 H.KLEINE,A.G.LADURNER,H.SCHULER,B.LUSCHER JRNL TITL RECOGNITION OF MONO-ADP-RIBOSYLATED ARTD10 SUBSTRATES BY JRNL TITL 2 ARTD8 MACRODOMAINS. JRNL REF STRUCTURE V. 21 462 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23473667 JRNL DOI 10.1016/J.STR.2012.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.02000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1420 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 940 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1936 ; 1.586 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2301 ; 0.934 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 5.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;33.357 ;24.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;15.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1548 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 258 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 889 ; 0.880 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 361 ; 0.197 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1452 ; 1.630 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 531 ; 2.538 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 481 ; 4.230 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55300 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1SPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 0.1M NA-ACETATE, 0.2M REMARK 280 NACL, PH 5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.42550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.42550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.05100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.59350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.05100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.59350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.42550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.05100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.59350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.42550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.05100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.59350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 GLY A 259 REMARK 465 VAL A 260 REMARK 465 ASP A 261 REMARK 465 LEU A 262 REMARK 465 GLY A 263 REMARK 465 THR A 264 REMARK 465 GLU A 265 REMARK 465 ASN A 266 REMARK 465 LEU A 267 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 ASN A 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 306 OD1 ASN A 308 2.03 REMARK 500 O HOH A 6 O HOH A 92 2.15 REMARK 500 O1D AR6 A 800 O HOH A 73 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 338 -176.43 -63.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AR6 A 800 DBREF 3V2B A 273 448 UNP Q460N3 PAR15_HUMAN 273 448 SEQADV 3V2B MET A 250 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 251 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 252 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 253 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 254 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 255 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B HIS A 256 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B SER A 257 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B SER A 258 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B GLY A 259 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B VAL A 260 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B ASP A 261 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B LEU A 262 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B GLY A 263 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B THR A 264 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B GLU A 265 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B ASN A 266 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B LEU A 267 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B TYR A 268 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B PHE A 269 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B GLN A 270 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B SER A 271 UNP Q460N3 EXPRESSION TAG SEQADV 3V2B MET A 272 UNP Q460N3 EXPRESSION TAG SEQRES 1 A 199 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 199 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR ALA TYR SEQRES 3 A 199 GLU MET LYS ILE GLY ALA ILE THR PHE GLN VAL ALA THR SEQRES 4 A 199 GLY ASP ILE ALA THR GLU GLN VAL ASP VAL ILE VAL ASN SEQRES 5 A 199 SER THR ALA ARG THR PHE ASN ARG LYS SER GLY VAL SER SEQRES 6 A 199 ARG ALA ILE LEU GLU GLY ALA GLY GLN ALA VAL GLU SER SEQRES 7 A 199 GLU CYS ALA VAL LEU ALA ALA GLN PRO HIS ARG ASP PHE SEQRES 8 A 199 ILE ILE THR PRO GLY GLY CYS LEU LYS CYS LYS ILE ILE SEQRES 9 A 199 ILE HIS VAL PRO GLY GLY LYS ASP VAL ARG LYS THR VAL SEQRES 10 A 199 THR SER VAL LEU GLU GLU CYS GLU GLN ARG LYS TYR THR SEQRES 11 A 199 SER VAL SER LEU PRO ALA ILE GLY THR GLY ASN ALA GLY SEQRES 12 A 199 LYS ASN PRO ILE THR VAL ALA ASP ASN ILE ILE ASP ALA SEQRES 13 A 199 ILE VAL ASP PHE SER SER GLN HIS SER THR PRO SER LEU SEQRES 14 A 199 LYS THR VAL LYS VAL VAL ILE PHE GLN PRO GLU LEU LEU SEQRES 15 A 199 ASN ILE PHE TYR ASP SER MET LYS LYS ARG ASP LEU SER SEQRES 16 A 199 ALA SER LEU ASN HET AR6 A 800 36 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 HOH *96(H2 O) HELIX 1 1 ASP A 290 GLU A 294 5 5 HELIX 2 2 GLY A 312 GLY A 322 1 11 HELIX 3 3 GLY A 322 ALA A 334 1 13 HELIX 4 4 ASP A 361 ARG A 376 1 16 HELIX 5 5 ASN A 394 HIS A 413 1 20 HELIX 6 6 PRO A 428 LYS A 440 1 13 SHEET 1 A 7 ALA A 274 ILE A 279 0 SHEET 2 A 7 ILE A 282 THR A 288 -1 O ILE A 282 N ILE A 279 SHEET 3 A 7 THR A 420 ILE A 425 1 O VAL A 421 N GLN A 285 SHEET 4 A 7 SER A 380 LEU A 383 1 N VAL A 381 O LYS A 422 SHEET 5 A 7 VAL A 298 THR A 303 1 N VAL A 300 O SER A 382 SHEET 6 A 7 ILE A 352 PRO A 357 1 O VAL A 356 N ASN A 301 SHEET 7 A 7 ILE A 341 PRO A 344 -1 N ILE A 341 O HIS A 355 SITE 1 AC1 28 HOH A 1 HOH A 2 HOH A 8 HOH A 29 SITE 2 AC1 28 HOH A 45 HOH A 69 HOH A 70 HOH A 73 SITE 3 AC1 28 HOH A 81 ASP A 290 ILE A 291 SER A 302 SITE 4 AC1 28 THR A 303 ARG A 309 SER A 311 GLY A 312 SITE 5 AC1 28 VAL A 313 ALA A 316 GLY A 358 GLY A 359 SITE 6 AC1 28 ALA A 385 GLY A 387 THR A 388 GLY A 389 SITE 7 AC1 28 ASN A 390 ALA A 391 PHE A 426 GLN A 427 CRYST1 68.102 91.187 62.851 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015911 0.00000