HEADER TRANSCRIPTION 14-DEC-11 3V46 TITLE CRYSTAL STRUCTURE OF YEAST CDC73 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 73; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RESIDUES 230-393; COMPND 5 SYNONYM: RNA POLYMERASE-ASSOCIATED PROTEIN CDC73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: CDC73, YLR418C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS RAS-LIKE FOLD, NON-GTP BINDING, PROTEIN INTERACTION SURFACE, KEYWDS 2 TRANSCRIPTION ELONGATION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.G.AMRICH,A.P.VANDEMARK REVDAT 3 28-FEB-24 3V46 1 SEQADV REVDAT 2 03-JUL-13 3V46 1 JRNL REVDAT 1 15-FEB-12 3V46 0 JRNL AUTH C.G.AMRICH,C.P.DAVIS,W.P.ROGAL,M.K.SHIRRA,A.HEROUX, JRNL AUTH 2 R.G.GARDNER,K.M.ARNDT,A.P.VANDEMARK JRNL TITL CDC73 SUBUNIT OF PAF1 COMPLEX CONTAINS C-TERMINAL RAS-LIKE JRNL TITL 2 DOMAIN THAT PROMOTES ASSOCIATION OF PAF1 COMPLEX WITH JRNL TITL 3 CHROMATIN. JRNL REF J.BIOL.CHEM. V. 287 10863 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22318720 JRNL DOI 10.1074/JBC.M111.325647 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7169 - 3.3368 1.00 2907 135 0.1992 0.2166 REMARK 3 2 3.3368 - 2.6487 1.00 2713 166 0.1805 0.2327 REMARK 3 3 2.6487 - 2.3140 1.00 2680 143 0.1676 0.2102 REMARK 3 4 2.3140 - 2.1024 1.00 2662 149 0.1459 0.1896 REMARK 3 5 2.1024 - 1.9517 1.00 2642 146 0.1408 0.1789 REMARK 3 6 1.9517 - 1.8367 1.00 2602 153 0.1308 0.1670 REMARK 3 7 1.8367 - 1.7447 1.00 2652 136 0.1275 0.1903 REMARK 3 8 1.7447 - 1.6687 1.00 2605 128 0.1272 0.1990 REMARK 3 9 1.6687 - 1.6045 0.99 2624 120 0.1326 0.1834 REMARK 3 10 1.6045 - 1.5490 0.99 2610 138 0.1540 0.2364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52330 REMARK 3 B22 (A**2) : -1.52330 REMARK 3 B33 (A**2) : 3.04670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1411 REMARK 3 ANGLE : 1.068 1917 REMARK 3 CHIRALITY : 0.070 200 REMARK 3 PLANARITY : 0.005 246 REMARK 3 DIHEDRAL : 12.943 531 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-10; 22-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 1.1 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL; REMARK 200 DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.549 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PH 8.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.11150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.66200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.66200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.55575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.66200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.66200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.66725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.66200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.66200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.55575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.66200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.66200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.66725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.11150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 ILE A 225 REMARK 465 ASP A 226 REMARK 465 PRO A 227 REMARK 465 PHE A 228 REMARK 465 THR A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 GLY A 232 REMARK 465 GLY A 233 DBREF 3V46 A 230 393 UNP Q06697 CDC73_YEAST 230 393 SEQADV 3V46 GLY A 224 UNP Q06697 EXPRESSION TAG SEQADV 3V46 ILE A 225 UNP Q06697 EXPRESSION TAG SEQADV 3V46 ASP A 226 UNP Q06697 EXPRESSION TAG SEQADV 3V46 PRO A 227 UNP Q06697 EXPRESSION TAG SEQADV 3V46 PHE A 228 UNP Q06697 EXPRESSION TAG SEQADV 3V46 THR A 229 UNP Q06697 EXPRESSION TAG SEQRES 1 A 170 GLY ILE ASP PRO PHE THR SER SER GLY GLY PRO ARG LYS SEQRES 2 A 170 ASP PRO ILE ILE LEU ILE PRO SER ALA ALA SER SER ILE SEQRES 3 A 170 LEU THR VAL ALA ASN ILE LYS GLN PHE LEU LEU GLU SER SEQRES 4 A 170 LYS TYR VAL ASN PRO ARG ASN LEU PRO SER VAL PRO ASN SEQRES 5 A 170 GLY LEU VAL ASN ILE GLU LYS ASN PHE GLU ARG ILE SER SEQRES 6 A 170 ARG PRO ILE ARG PHE ILE ILE VAL ASP ASN THR ARG MET SEQRES 7 A 170 PHE THR LYS PRO GLU TYR TRP ASP ARG VAL VAL ALA ILE SEQRES 8 A 170 PHE THR THR GLY HIS THR TRP GLN PHE ASN ASN TYR GLN SEQRES 9 A 170 TRP ASN SER PRO GLN GLU LEU PHE GLN ARG CYS LYS GLY SEQRES 10 A 170 TYR TYR PHE HIS PHE ALA GLY ASP SER VAL PRO GLN HIS SEQRES 11 A 170 VAL GLN GLN TRP ASN VAL GLU LYS VAL GLU LEU ASP LYS SEQRES 12 A 170 ASN LYS ARG PHE LYS ASP VAL GLU VAL VAL ARG TYR PHE SEQRES 13 A 170 TRP HIS SER LEU GLU LYS GLU LEU ILE SER ARG GLY TYR SEQRES 14 A 170 ARG FORMUL 2 HOH *145(H2 O) HELIX 1 1 ASN A 254 SER A 262 1 9 HELIX 2 2 ASN A 266 LEU A 270 5 5 HELIX 3 3 LYS A 304 ASP A 309 5 6 HELIX 4 4 HIS A 319 ASN A 324 5 6 HELIX 5 5 SER A 330 CYS A 338 1 9 HELIX 6 6 PRO A 351 TRP A 357 1 7 HELIX 7 7 LYS A 371 ARG A 390 1 20 SHEET 1 A 6 LEU A 277 LYS A 282 0 SHEET 2 A 6 ILE A 291 VAL A 296 -1 O PHE A 293 N ILE A 280 SHEET 3 A 6 ILE A 239 LEU A 241 1 N ILE A 240 O ILE A 294 SHEET 4 A 6 VAL A 311 PHE A 315 1 O PHE A 315 N LEU A 241 SHEET 5 A 6 LYS A 339 PHE A 345 1 O TYR A 341 N ILE A 314 SHEET 6 A 6 VAL A 359 LEU A 364 1 O GLU A 360 N TYR A 342 CRYST1 53.324 53.324 130.223 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007679 0.00000