data_3V4M # _entry.id 3V4M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3V4M pdb_00003v4m 10.2210/pdb3v4m/pdb RCSB RCSB069588 ? ? WWPDB D_1000069588 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 422736 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3V4M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title ;Crystal structure of a RNA binding domain of a U2 small nuclear ribonucleoprotein auxiliary factor 2 (U2AF) from Mus musculus at 1.80 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 3V4M _cell.length_a 60.192 _cell.length_b 60.192 _cell.length_c 239.686 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3V4M _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Splicing factor U2AF 65 kDa subunit' 12174.353 2 ? ? 'RNA binding domain' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 148 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U2 auxiliary factor 65 kDa subunit, U2 snRNP auxiliary factor large subunit' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGHPTEVLCL(MSE)N(MSE)VLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC QKA(MSE)QGLTGRKFANRVVVTKYCDPDSYHRRDFW ; _entity_poly.pdbx_seq_one_letter_code_can ;GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT GRKFANRVVVTKYCDPDSYHRRDFW ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 422736 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 HIS n 1 4 PRO n 1 5 THR n 1 6 GLU n 1 7 VAL n 1 8 LEU n 1 9 CYS n 1 10 LEU n 1 11 MSE n 1 12 ASN n 1 13 MSE n 1 14 VAL n 1 15 LEU n 1 16 PRO n 1 17 GLU n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 ASP n 1 22 ASP n 1 23 GLU n 1 24 GLU n 1 25 TYR n 1 26 GLU n 1 27 GLU n 1 28 ILE n 1 29 VAL n 1 30 GLU n 1 31 ASP n 1 32 VAL n 1 33 ARG n 1 34 ASP n 1 35 GLU n 1 36 CYS n 1 37 SER n 1 38 LYS n 1 39 TYR n 1 40 GLY n 1 41 LEU n 1 42 VAL n 1 43 LYS n 1 44 SER n 1 45 ILE n 1 46 GLU n 1 47 ILE n 1 48 PRO n 1 49 ARG n 1 50 PRO n 1 51 VAL n 1 52 ASP n 1 53 GLY n 1 54 VAL n 1 55 GLU n 1 56 VAL n 1 57 PRO n 1 58 GLY n 1 59 CYS n 1 60 GLY n 1 61 LYS n 1 62 ILE n 1 63 PHE n 1 64 VAL n 1 65 GLU n 1 66 PHE n 1 67 THR n 1 68 SER n 1 69 VAL n 1 70 PHE n 1 71 ASP n 1 72 CYS n 1 73 GLN n 1 74 LYS n 1 75 ALA n 1 76 MSE n 1 77 GLN n 1 78 GLY n 1 79 LEU n 1 80 THR n 1 81 GLY n 1 82 ARG n 1 83 LYS n 1 84 PHE n 1 85 ALA n 1 86 ASN n 1 87 ARG n 1 88 VAL n 1 89 VAL n 1 90 VAL n 1 91 THR n 1 92 LYS n 1 93 TYR n 1 94 CYS n 1 95 ASP n 1 96 PRO n 1 97 ASP n 1 98 SER n 1 99 TYR n 1 100 HIS n 1 101 ARG n 1 102 ARG n 1 103 ASP n 1 104 PHE n 1 105 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC043071, U2af2, U2af65' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code U2AF2_MOUSE _struct_ref.pdbx_db_accession P26369 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG RKFANRVVVTKYCDPDSYHRRDFW ; _struct_ref.pdbx_align_begin 372 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3V4M A 2 ? 105 ? P26369 372 ? 475 ? 372 475 2 1 3V4M B 2 ? 105 ? P26369 372 ? 475 ? 372 475 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3V4M GLY A 1 ? UNP P26369 ? ? 'expression tag' 0 1 2 3V4M GLY B 1 ? UNP P26369 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3V4M # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '4.0M NaFormate, No Buffer pH 7.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' _diffrn_detector.pdbx_collection_date 2011-09-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9537 1.0 2 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list 0.9537,0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 3V4M _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 29.190 _reflns.number_obs 25066 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 17.880 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 21.384 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.800 1.860 23880 ? 4213 0.854 2.2 ? ? ? ? ? 100.000 1 1 1.860 1.940 27723 ? 4888 0.600 3.3 ? ? ? ? ? 100.000 2 1 1.940 2.030 25770 ? 4528 0.386 5.2 ? ? ? ? ? 100.000 3 1 2.030 2.130 24098 ? 4238 0.249 7.9 ? ? ? ? ? 100.000 4 1 2.130 2.270 26902 ? 4714 0.185 10.4 ? ? ? ? ? 100.000 5 1 2.270 2.440 25153 ? 4397 0.144 12.9 ? ? ? ? ? 100.000 6 1 2.440 2.690 26256 ? 4587 0.104 16.8 ? ? ? ? ? 100.000 7 1 2.690 3.070 25390 ? 4434 0.062 25.9 ? ? ? ? ? 100.000 8 1 3.070 3.870 25817 ? 4562 0.035 41.3 ? ? ? ? ? 100.000 9 1 3.870 ? 25711 ? 4570 0.026 52.2 ? ? ? ? ? 99.600 10 1 # _refine.entry_id 3V4M _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 29.190 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8800 _refine.ls_number_reflns_obs 24964 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET I INCORPORATION. 5.A SODIUM (NA) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION ARE MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1788 _refine.ls_R_factor_R_work 0.1774 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2069 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1269 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.0161 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0700 _refine.aniso_B[2][2] -0.0700 _refine.aniso_B[3][3] 0.1000 _refine.aniso_B[1][2] -0.0300 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9570 _refine.correlation_coeff_Fo_to_Fc_free 0.9460 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1130 _refine.pdbx_overall_ESU_R_Free 0.1080 _refine.overall_SU_ML 0.0690 _refine.overall_SU_B 4.2960 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 104.420 _refine.B_iso_min 9.690 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1658 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 1809 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 29.190 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1843 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1319 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2519 1.289 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3227 0.817 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 247 5.009 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 93 32.668 23.548 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 346 13.930 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18 15.675 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 274 0.078 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2086 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 387 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1339 1.060 5.000 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' B 1339 4.450 10.000 2 ? ? ? # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 1470 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2680 _refine_ls_shell.R_factor_R_free 0.2980 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1543 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 6 A 368 A 475 ? . . . . . . . . 1 2 1 6 B 368 B 475 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3V4M _struct.title ;Crystal structure of a RNA binding domain of a U2 small nuclear ribonucleoprotein auxiliary factor 2 (U2AF) from Mus musculus at 1.80 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Canonical RNA binding protein, RNA Splicing, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA BINDING PROTEIN, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 3V4M # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AND TETRAMER AS THE SIGNIFICANT OLIGOMERIZATION STATES.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 15 ? LEU A 19 ? LEU A 385 LEU A 389 5 ? 5 HELX_P HELX_P2 2 ASP A 21 ? LYS A 38 ? ASP A 391 LYS A 408 1 ? 18 HELX_P HELX_P3 3 SER A 68 ? THR A 80 ? SER A 438 THR A 450 1 ? 13 HELX_P HELX_P4 4 ASP A 95 ? ARG A 101 ? ASP A 465 ARG A 471 1 ? 7 HELX_P HELX_P5 5 LEU B 15 ? LEU B 20 ? LEU B 385 LEU B 390 5 ? 6 HELX_P HELX_P6 6 ASP B 21 ? SER B 37 ? ASP B 391 SER B 407 1 ? 17 HELX_P HELX_P7 7 SER B 68 ? THR B 80 ? SER B 438 THR B 450 1 ? 13 HELX_P HELX_P8 8 ASP B 95 ? ARG B 101 ? ASP B 465 ARG B 471 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 10 C ? ? ? 1_555 A MSE 11 N ? ? A LEU 380 A MSE 381 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 11 C ? ? ? 1_555 A ASN 12 N ? ? A MSE 381 A ASN 382 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale3 covale both ? A ASN 12 C ? ? ? 1_555 A MSE 13 N ? ? A ASN 382 A MSE 383 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale4 covale both ? A MSE 13 C ? ? ? 1_555 A VAL 14 N ? ? A MSE 383 A VAL 384 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A ALA 75 C ? ? ? 1_555 A MSE 76 N ? ? A ALA 445 A MSE 446 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 76 C ? ? ? 1_555 A GLN 77 N ? ? A MSE 446 A GLN 447 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? B LEU 10 C ? ? ? 1_555 B MSE 11 N ? ? B LEU 380 B MSE 381 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? B MSE 11 C ? ? ? 1_555 B ASN 12 N ? ? B MSE 381 B ASN 382 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? B ASN 12 C ? ? ? 1_555 B MSE 13 N ? ? B ASN 382 B MSE 383 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? B MSE 13 C ? ? ? 1_555 B VAL 14 N ? ? B MSE 383 B VAL 384 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? B ALA 75 C ? ? ? 1_555 B MSE 76 N ? ? B ALA 445 B MSE 446 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? B MSE 76 C ? ? ? 1_555 B GLN 77 N ? ? B MSE 446 B GLN 447 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? B VAL 51 O ? ? ? 1_555 D NA . NA ? ? B VAL 421 B NA 476 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc2 metalc ? ? B VAL 54 O ? ? ? 1_555 D NA . NA ? ? B VAL 424 B NA 476 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 476 B HOH 496 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 476 B HOH 527 1_555 ? ? ? ? ? ? ? 2.678 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 476 B HOH 578 1_555 ? ? ? ? ? ? ? 2.081 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 42 ? GLU A 46 ? VAL A 412 GLU A 416 A 2 LYS A 61 ? PHE A 66 ? LYS A 431 PHE A 436 A 3 VAL A 7 ? MSE A 11 ? VAL A 377 MSE A 381 A 4 VAL A 90 ? CYS A 94 ? VAL A 460 CYS A 464 B 1 LYS A 83 ? PHE A 84 ? LYS A 453 PHE A 454 B 2 ARG A 87 ? VAL A 88 ? ARG A 457 VAL A 458 C 1 VAL B 42 ? GLU B 46 ? VAL B 412 GLU B 416 C 2 LYS B 61 ? PHE B 66 ? LYS B 431 PHE B 436 C 3 VAL B 7 ? MSE B 11 ? VAL B 377 MSE B 381 C 4 VAL B 90 ? CYS B 94 ? VAL B 460 CYS B 464 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 46 ? N GLU A 416 O PHE A 63 ? O PHE A 433 A 2 3 O ILE A 62 ? O ILE A 432 N LEU A 10 ? N LEU A 380 A 3 4 N MSE A 11 ? N MSE A 381 O VAL A 90 ? O VAL A 460 B 1 2 N PHE A 84 ? N PHE A 454 O ARG A 87 ? O ARG A 457 C 1 2 N SER B 44 ? N SER B 414 O GLU B 65 ? O GLU B 435 C 2 3 O ILE B 62 ? O ILE B 432 N LEU B 10 ? N LEU B 380 C 3 4 N MSE B 11 ? N MSE B 381 O VAL B 90 ? O VAL B 460 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 478 ? 4 'BINDING SITE FOR RESIDUE CL A 478' AC2 Software B NA 476 ? 5 'BINDING SITE FOR RESIDUE NA B 476' AC3 Software B CL 477 ? 5 'BINDING SITE FOR RESIDUE CL B 477' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 12 ? ASN A 382 . ? 1_555 ? 2 AC1 4 ARG A 87 ? ARG A 457 . ? 1_555 ? 3 AC1 4 VAL A 88 ? VAL A 458 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 626 . ? 1_555 ? 5 AC2 5 VAL B 51 ? VAL B 421 . ? 1_555 ? 6 AC2 5 VAL B 54 ? VAL B 424 . ? 1_555 ? 7 AC2 5 HOH G . ? HOH B 496 . ? 1_555 ? 8 AC2 5 HOH G . ? HOH B 527 . ? 1_555 ? 9 AC2 5 HOH G . ? HOH B 578 . ? 1_555 ? 10 AC3 5 LYS A 74 ? LYS A 444 . ? 8_565 ? 11 AC3 5 GLN A 77 ? GLN A 447 . ? 8_565 ? 12 AC3 5 HOH F . ? HOH A 543 . ? 8_565 ? 13 AC3 5 VAL B 51 ? VAL B 421 . ? 1_555 ? 14 AC3 5 ASP B 52 ? ASP B 422 . ? 1_555 ? # _atom_sites.entry_id 3V4M _atom_sites.fract_transf_matrix[1][1] 0.016614 _atom_sites.fract_transf_matrix[1][2] 0.009592 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019184 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004172 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLY 2 372 372 GLY GLY A . n A 1 3 HIS 3 373 373 HIS HIS A . n A 1 4 PRO 4 374 374 PRO PRO A . n A 1 5 THR 5 375 375 THR THR A . n A 1 6 GLU 6 376 376 GLU GLU A . n A 1 7 VAL 7 377 377 VAL VAL A . n A 1 8 LEU 8 378 378 LEU LEU A . n A 1 9 CYS 9 379 379 CYS CYS A . n A 1 10 LEU 10 380 380 LEU LEU A . n A 1 11 MSE 11 381 381 MSE MSE A . n A 1 12 ASN 12 382 382 ASN ASN A . n A 1 13 MSE 13 383 383 MSE MSE A . n A 1 14 VAL 14 384 384 VAL VAL A . n A 1 15 LEU 15 385 385 LEU LEU A . n A 1 16 PRO 16 386 386 PRO PRO A . n A 1 17 GLU 17 387 387 GLU GLU A . n A 1 18 GLU 18 388 388 GLU GLU A . n A 1 19 LEU 19 389 389 LEU LEU A . n A 1 20 LEU 20 390 390 LEU LEU A . n A 1 21 ASP 21 391 391 ASP ASP A . n A 1 22 ASP 22 392 392 ASP ASP A . n A 1 23 GLU 23 393 393 GLU GLU A . n A 1 24 GLU 24 394 394 GLU GLU A . n A 1 25 TYR 25 395 395 TYR TYR A . n A 1 26 GLU 26 396 396 GLU GLU A . n A 1 27 GLU 27 397 397 GLU GLU A . n A 1 28 ILE 28 398 398 ILE ILE A . n A 1 29 VAL 29 399 399 VAL VAL A . n A 1 30 GLU 30 400 400 GLU GLU A . n A 1 31 ASP 31 401 401 ASP ASP A . n A 1 32 VAL 32 402 402 VAL VAL A . n A 1 33 ARG 33 403 403 ARG ARG A . n A 1 34 ASP 34 404 404 ASP ASP A . n A 1 35 GLU 35 405 405 GLU GLU A . n A 1 36 CYS 36 406 406 CYS CYS A . n A 1 37 SER 37 407 407 SER SER A . n A 1 38 LYS 38 408 408 LYS LYS A . n A 1 39 TYR 39 409 409 TYR TYR A . n A 1 40 GLY 40 410 410 GLY GLY A . n A 1 41 LEU 41 411 411 LEU LEU A . n A 1 42 VAL 42 412 412 VAL VAL A . n A 1 43 LYS 43 413 413 LYS LYS A . n A 1 44 SER 44 414 414 SER SER A . n A 1 45 ILE 45 415 415 ILE ILE A . n A 1 46 GLU 46 416 416 GLU GLU A . n A 1 47 ILE 47 417 417 ILE ILE A . n A 1 48 PRO 48 418 418 PRO PRO A . n A 1 49 ARG 49 419 419 ARG ARG A . n A 1 50 PRO 50 420 420 PRO PRO A . n A 1 51 VAL 51 421 421 VAL VAL A . n A 1 52 ASP 52 422 422 ASP ASP A . n A 1 53 GLY 53 423 423 GLY GLY A . n A 1 54 VAL 54 424 424 VAL VAL A . n A 1 55 GLU 55 425 425 GLU GLU A . n A 1 56 VAL 56 426 426 VAL VAL A . n A 1 57 PRO 57 427 427 PRO PRO A . n A 1 58 GLY 58 428 428 GLY GLY A . n A 1 59 CYS 59 429 429 CYS CYS A . n A 1 60 GLY 60 430 430 GLY GLY A . n A 1 61 LYS 61 431 431 LYS LYS A . n A 1 62 ILE 62 432 432 ILE ILE A . n A 1 63 PHE 63 433 433 PHE PHE A . n A 1 64 VAL 64 434 434 VAL VAL A . n A 1 65 GLU 65 435 435 GLU GLU A . n A 1 66 PHE 66 436 436 PHE PHE A . n A 1 67 THR 67 437 437 THR THR A . n A 1 68 SER 68 438 438 SER SER A . n A 1 69 VAL 69 439 439 VAL VAL A . n A 1 70 PHE 70 440 440 PHE PHE A . n A 1 71 ASP 71 441 441 ASP ASP A . n A 1 72 CYS 72 442 442 CYS CYS A . n A 1 73 GLN 73 443 443 GLN GLN A . n A 1 74 LYS 74 444 444 LYS LYS A . n A 1 75 ALA 75 445 445 ALA ALA A . n A 1 76 MSE 76 446 446 MSE MSE A . n A 1 77 GLN 77 447 447 GLN GLN A . n A 1 78 GLY 78 448 448 GLY GLY A . n A 1 79 LEU 79 449 449 LEU LEU A . n A 1 80 THR 80 450 450 THR THR A . n A 1 81 GLY 81 451 451 GLY GLY A . n A 1 82 ARG 82 452 452 ARG ARG A . n A 1 83 LYS 83 453 453 LYS LYS A . n A 1 84 PHE 84 454 454 PHE PHE A . n A 1 85 ALA 85 455 455 ALA ALA A . n A 1 86 ASN 86 456 456 ASN ASN A . n A 1 87 ARG 87 457 457 ARG ARG A . n A 1 88 VAL 88 458 458 VAL VAL A . n A 1 89 VAL 89 459 459 VAL VAL A . n A 1 90 VAL 90 460 460 VAL VAL A . n A 1 91 THR 91 461 461 THR THR A . n A 1 92 LYS 92 462 462 LYS LYS A . n A 1 93 TYR 93 463 463 TYR TYR A . n A 1 94 CYS 94 464 464 CYS CYS A . n A 1 95 ASP 95 465 465 ASP ASP A . n A 1 96 PRO 96 466 466 PRO PRO A . n A 1 97 ASP 97 467 467 ASP ASP A . n A 1 98 SER 98 468 468 SER SER A . n A 1 99 TYR 99 469 469 TYR TYR A . n A 1 100 HIS 100 470 470 HIS HIS A . n A 1 101 ARG 101 471 471 ARG ARG A . n A 1 102 ARG 102 472 472 ARG ARG A . n A 1 103 ASP 103 473 473 ASP ASP A . n A 1 104 PHE 104 474 474 PHE PHE A . n A 1 105 TRP 105 475 475 TRP TRP A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 GLY 2 372 372 GLY GLY B . n B 1 3 HIS 3 373 373 HIS HIS B . n B 1 4 PRO 4 374 374 PRO PRO B . n B 1 5 THR 5 375 375 THR THR B . n B 1 6 GLU 6 376 376 GLU GLU B . n B 1 7 VAL 7 377 377 VAL VAL B . n B 1 8 LEU 8 378 378 LEU LEU B . n B 1 9 CYS 9 379 379 CYS CYS B . n B 1 10 LEU 10 380 380 LEU LEU B . n B 1 11 MSE 11 381 381 MSE MSE B . n B 1 12 ASN 12 382 382 ASN ASN B . n B 1 13 MSE 13 383 383 MSE MSE B . n B 1 14 VAL 14 384 384 VAL VAL B . n B 1 15 LEU 15 385 385 LEU LEU B . n B 1 16 PRO 16 386 386 PRO PRO B . n B 1 17 GLU 17 387 387 GLU GLU B . n B 1 18 GLU 18 388 388 GLU GLU B . n B 1 19 LEU 19 389 389 LEU LEU B . n B 1 20 LEU 20 390 390 LEU LEU B . n B 1 21 ASP 21 391 391 ASP ASP B . n B 1 22 ASP 22 392 392 ASP ASP B . n B 1 23 GLU 23 393 393 GLU GLU B . n B 1 24 GLU 24 394 394 GLU GLU B . n B 1 25 TYR 25 395 395 TYR TYR B . n B 1 26 GLU 26 396 396 GLU GLU B . n B 1 27 GLU 27 397 397 GLU GLU B . n B 1 28 ILE 28 398 398 ILE ILE B . n B 1 29 VAL 29 399 399 VAL VAL B . n B 1 30 GLU 30 400 400 GLU GLU B . n B 1 31 ASP 31 401 401 ASP ASP B . n B 1 32 VAL 32 402 402 VAL VAL B . n B 1 33 ARG 33 403 403 ARG ARG B . n B 1 34 ASP 34 404 404 ASP ASP B . n B 1 35 GLU 35 405 405 GLU GLU B . n B 1 36 CYS 36 406 406 CYS CYS B . n B 1 37 SER 37 407 407 SER SER B . n B 1 38 LYS 38 408 408 LYS LYS B . n B 1 39 TYR 39 409 409 TYR TYR B . n B 1 40 GLY 40 410 410 GLY GLY B . n B 1 41 LEU 41 411 411 LEU LEU B . n B 1 42 VAL 42 412 412 VAL VAL B . n B 1 43 LYS 43 413 413 LYS LYS B . n B 1 44 SER 44 414 414 SER SER B . n B 1 45 ILE 45 415 415 ILE ILE B . n B 1 46 GLU 46 416 416 GLU GLU B . n B 1 47 ILE 47 417 417 ILE ILE B . n B 1 48 PRO 48 418 418 PRO PRO B . n B 1 49 ARG 49 419 419 ARG ARG B . n B 1 50 PRO 50 420 420 PRO PRO B . n B 1 51 VAL 51 421 421 VAL VAL B . n B 1 52 ASP 52 422 422 ASP ASP B . n B 1 53 GLY 53 423 423 GLY GLY B . n B 1 54 VAL 54 424 424 VAL VAL B . n B 1 55 GLU 55 425 425 GLU GLU B . n B 1 56 VAL 56 426 426 VAL VAL B . n B 1 57 PRO 57 427 427 PRO PRO B . n B 1 58 GLY 58 428 428 GLY GLY B . n B 1 59 CYS 59 429 429 CYS CYS B . n B 1 60 GLY 60 430 430 GLY GLY B . n B 1 61 LYS 61 431 431 LYS LYS B . n B 1 62 ILE 62 432 432 ILE ILE B . n B 1 63 PHE 63 433 433 PHE PHE B . n B 1 64 VAL 64 434 434 VAL VAL B . n B 1 65 GLU 65 435 435 GLU GLU B . n B 1 66 PHE 66 436 436 PHE PHE B . n B 1 67 THR 67 437 437 THR THR B . n B 1 68 SER 68 438 438 SER SER B . n B 1 69 VAL 69 439 439 VAL VAL B . n B 1 70 PHE 70 440 440 PHE PHE B . n B 1 71 ASP 71 441 441 ASP ASP B . n B 1 72 CYS 72 442 442 CYS CYS B . n B 1 73 GLN 73 443 443 GLN GLN B . n B 1 74 LYS 74 444 444 LYS LYS B . n B 1 75 ALA 75 445 445 ALA ALA B . n B 1 76 MSE 76 446 446 MSE MSE B . n B 1 77 GLN 77 447 447 GLN GLN B . n B 1 78 GLY 78 448 448 GLY GLY B . n B 1 79 LEU 79 449 449 LEU LEU B . n B 1 80 THR 80 450 450 THR THR B . n B 1 81 GLY 81 451 451 GLY GLY B . n B 1 82 ARG 82 452 452 ARG ARG B . n B 1 83 LYS 83 453 453 LYS LYS B . n B 1 84 PHE 84 454 454 PHE PHE B . n B 1 85 ALA 85 455 455 ALA ALA B . n B 1 86 ASN 86 456 456 ASN ASN B . n B 1 87 ARG 87 457 457 ARG ARG B . n B 1 88 VAL 88 458 458 VAL VAL B . n B 1 89 VAL 89 459 459 VAL VAL B . n B 1 90 VAL 90 460 460 VAL VAL B . n B 1 91 THR 91 461 461 THR THR B . n B 1 92 LYS 92 462 462 LYS LYS B . n B 1 93 TYR 93 463 463 TYR TYR B . n B 1 94 CYS 94 464 464 CYS CYS B . n B 1 95 ASP 95 465 465 ASP ASP B . n B 1 96 PRO 96 466 466 PRO PRO B . n B 1 97 ASP 97 467 467 ASP ASP B . n B 1 98 SER 98 468 468 SER SER B . n B 1 99 TYR 99 469 469 TYR TYR B . n B 1 100 HIS 100 470 470 HIS HIS B . n B 1 101 ARG 101 471 471 ARG ARG B . n B 1 102 ARG 102 472 472 ARG ARG B . n B 1 103 ASP 103 473 473 ASP ASP B . n B 1 104 PHE 104 474 474 PHE PHE B . n B 1 105 TRP 105 475 475 TRP TRP B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 478 478 CL CL A . D 3 NA 1 476 476 NA NA B . E 2 CL 1 477 477 CL CL B . F 4 HOH 1 479 479 HOH HOH A . F 4 HOH 2 481 481 HOH HOH A . F 4 HOH 3 483 483 HOH HOH A . F 4 HOH 4 484 484 HOH HOH A . F 4 HOH 5 486 486 HOH HOH A . F 4 HOH 6 491 491 HOH HOH A . F 4 HOH 7 494 494 HOH HOH A . F 4 HOH 8 501 501 HOH HOH A . F 4 HOH 9 502 502 HOH HOH A . F 4 HOH 10 504 504 HOH HOH A . F 4 HOH 11 505 505 HOH HOH A . F 4 HOH 12 508 508 HOH HOH A . F 4 HOH 13 509 509 HOH HOH A . F 4 HOH 14 515 515 HOH HOH A . F 4 HOH 15 516 516 HOH HOH A . F 4 HOH 16 518 518 HOH HOH A . F 4 HOH 17 521 521 HOH HOH A . F 4 HOH 18 522 522 HOH HOH A . F 4 HOH 19 523 523 HOH HOH A . F 4 HOH 20 525 525 HOH HOH A . F 4 HOH 21 529 529 HOH HOH A . F 4 HOH 22 530 530 HOH HOH A . F 4 HOH 23 532 532 HOH HOH A . F 4 HOH 24 534 534 HOH HOH A . F 4 HOH 25 535 535 HOH HOH A . F 4 HOH 26 536 536 HOH HOH A . F 4 HOH 27 537 537 HOH HOH A . F 4 HOH 28 538 538 HOH HOH A . F 4 HOH 29 539 539 HOH HOH A . F 4 HOH 30 540 540 HOH HOH A . F 4 HOH 31 541 541 HOH HOH A . F 4 HOH 32 542 542 HOH HOH A . F 4 HOH 33 543 543 HOH HOH A . F 4 HOH 34 545 545 HOH HOH A . F 4 HOH 35 547 547 HOH HOH A . F 4 HOH 36 551 551 HOH HOH A . F 4 HOH 37 554 554 HOH HOH A . F 4 HOH 38 558 558 HOH HOH A . F 4 HOH 39 559 559 HOH HOH A . F 4 HOH 40 560 560 HOH HOH A . F 4 HOH 41 561 561 HOH HOH A . F 4 HOH 42 562 562 HOH HOH A . F 4 HOH 43 563 563 HOH HOH A . F 4 HOH 44 567 567 HOH HOH A . F 4 HOH 45 568 568 HOH HOH A . F 4 HOH 46 569 569 HOH HOH A . F 4 HOH 47 570 570 HOH HOH A . F 4 HOH 48 571 571 HOH HOH A . F 4 HOH 49 575 575 HOH HOH A . F 4 HOH 50 576 576 HOH HOH A . F 4 HOH 51 577 577 HOH HOH A . F 4 HOH 52 579 579 HOH HOH A . F 4 HOH 53 580 580 HOH HOH A . F 4 HOH 54 581 581 HOH HOH A . F 4 HOH 55 582 582 HOH HOH A . F 4 HOH 56 583 583 HOH HOH A . F 4 HOH 57 584 584 HOH HOH A . F 4 HOH 58 585 585 HOH HOH A . F 4 HOH 59 598 598 HOH HOH A . F 4 HOH 60 601 601 HOH HOH A . F 4 HOH 61 602 602 HOH HOH A . F 4 HOH 62 603 603 HOH HOH A . F 4 HOH 63 604 604 HOH HOH A . F 4 HOH 64 607 607 HOH HOH A . F 4 HOH 65 608 608 HOH HOH A . F 4 HOH 66 609 609 HOH HOH A . F 4 HOH 67 626 626 HOH HOH A . G 4 HOH 1 480 480 HOH HOH B . G 4 HOH 2 482 482 HOH HOH B . G 4 HOH 3 485 485 HOH HOH B . G 4 HOH 4 487 487 HOH HOH B . G 4 HOH 5 488 488 HOH HOH B . G 4 HOH 6 489 489 HOH HOH B . G 4 HOH 7 490 490 HOH HOH B . G 4 HOH 8 492 492 HOH HOH B . G 4 HOH 9 493 493 HOH HOH B . G 4 HOH 10 495 495 HOH HOH B . G 4 HOH 11 496 496 HOH HOH B . G 4 HOH 12 497 497 HOH HOH B . G 4 HOH 13 498 498 HOH HOH B . G 4 HOH 14 499 499 HOH HOH B . G 4 HOH 15 500 500 HOH HOH B . G 4 HOH 16 503 503 HOH HOH B . G 4 HOH 17 506 506 HOH HOH B . G 4 HOH 18 507 507 HOH HOH B . G 4 HOH 19 510 510 HOH HOH B . G 4 HOH 20 511 511 HOH HOH B . G 4 HOH 21 512 512 HOH HOH B . G 4 HOH 22 513 513 HOH HOH B . G 4 HOH 23 514 514 HOH HOH B . G 4 HOH 24 517 517 HOH HOH B . G 4 HOH 25 519 519 HOH HOH B . G 4 HOH 26 520 520 HOH HOH B . G 4 HOH 27 524 524 HOH HOH B . G 4 HOH 28 526 526 HOH HOH B . G 4 HOH 29 527 527 HOH HOH B . G 4 HOH 30 528 528 HOH HOH B . G 4 HOH 31 531 531 HOH HOH B . G 4 HOH 32 533 533 HOH HOH B . G 4 HOH 33 544 544 HOH HOH B . G 4 HOH 34 546 546 HOH HOH B . G 4 HOH 35 548 548 HOH HOH B . G 4 HOH 36 549 549 HOH HOH B . G 4 HOH 37 550 550 HOH HOH B . G 4 HOH 38 552 552 HOH HOH B . G 4 HOH 39 553 553 HOH HOH B . G 4 HOH 40 555 555 HOH HOH B . G 4 HOH 41 556 556 HOH HOH B . G 4 HOH 42 557 557 HOH HOH B . G 4 HOH 43 564 564 HOH HOH B . G 4 HOH 44 565 565 HOH HOH B . G 4 HOH 45 566 566 HOH HOH B . G 4 HOH 46 572 572 HOH HOH B . G 4 HOH 47 573 573 HOH HOH B . G 4 HOH 48 574 574 HOH HOH B . G 4 HOH 49 578 578 HOH HOH B . G 4 HOH 50 586 586 HOH HOH B . G 4 HOH 51 587 587 HOH HOH B . G 4 HOH 52 588 588 HOH HOH B . G 4 HOH 53 589 589 HOH HOH B . G 4 HOH 54 590 590 HOH HOH B . G 4 HOH 55 591 591 HOH HOH B . G 4 HOH 56 592 592 HOH HOH B . G 4 HOH 57 593 593 HOH HOH B . G 4 HOH 58 594 594 HOH HOH B . G 4 HOH 59 595 595 HOH HOH B . G 4 HOH 60 596 596 HOH HOH B . G 4 HOH 61 597 597 HOH HOH B . G 4 HOH 62 599 599 HOH HOH B . G 4 HOH 63 600 600 HOH HOH B . G 4 HOH 64 605 605 HOH HOH B . G 4 HOH 65 606 606 HOH HOH B . G 4 HOH 66 610 610 HOH HOH B . G 4 HOH 67 611 611 HOH HOH B . G 4 HOH 68 612 612 HOH HOH B . G 4 HOH 69 613 613 HOH HOH B . G 4 HOH 70 614 614 HOH HOH B . G 4 HOH 71 615 615 HOH HOH B . G 4 HOH 72 616 616 HOH HOH B . G 4 HOH 73 617 617 HOH HOH B . G 4 HOH 74 618 618 HOH HOH B . G 4 HOH 75 619 619 HOH HOH B . G 4 HOH 76 620 620 HOH HOH B . G 4 HOH 77 621 621 HOH HOH B . G 4 HOH 78 622 622 HOH HOH B . G 4 HOH 79 623 623 HOH HOH B . G 4 HOH 80 624 624 HOH HOH B . G 4 HOH 81 627 627 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 381 ? MET SELENOMETHIONINE 2 A MSE 13 A MSE 383 ? MET SELENOMETHIONINE 3 A MSE 76 A MSE 446 ? MET SELENOMETHIONINE 4 B MSE 11 B MSE 381 ? MET SELENOMETHIONINE 5 B MSE 13 B MSE 383 ? MET SELENOMETHIONINE 6 B MSE 76 B MSE 446 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4870 ? 1 MORE -79 ? 1 'SSA (A^2)' 20150 ? 2 'ABSA (A^2)' 1260 ? 2 MORE -37 ? 2 'SSA (A^2)' 11250 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 30.0960000000 -0.8660254038 -0.5000000000 0.0000000000 52.1278011046 0.0000000000 0.0000000000 -1.0000000000 39.9476666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B VAL 51 ? B VAL 421 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? B VAL 54 ? B VAL 424 ? 1_555 82.3 ? 2 O ? B VAL 51 ? B VAL 421 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 496 ? 1_555 164.9 ? 3 O ? B VAL 54 ? B VAL 424 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 496 ? 1_555 89.3 ? 4 O ? B VAL 51 ? B VAL 421 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 527 ? 1_555 97.7 ? 5 O ? B VAL 54 ? B VAL 424 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 527 ? 1_555 107.7 ? 6 O ? G HOH . ? B HOH 496 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 527 ? 1_555 96.8 ? 7 O ? B VAL 51 ? B VAL 421 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 578 ? 1_555 90.6 ? 8 O ? B VAL 54 ? B VAL 424 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 578 ? 1_555 133.9 ? 9 O ? G HOH . ? B HOH 496 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 578 ? 1_555 86.1 ? 10 O ? G HOH . ? B HOH 527 ? 1_555 NA ? D NA . ? B NA 476 ? 1_555 O ? G HOH . ? B HOH 578 ? 1_555 118.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.0146 13.0139 11.2729 0.0902 0.1122 0.0399 -0.0644 0.0094 0.0305 1.1766 0.9818 1.7918 0.3288 0.1990 0.1745 0.0117 0.0674 -0.0791 0.0139 -0.0819 0.1331 0.1576 0.3526 -0.4022 'X-RAY DIFFRACTION' 2 ? refined 13.9381 35.2573 -0.9255 0.0019 0.0846 0.0466 -0.0015 -0.0047 0.0328 2.4498 0.4952 1.0711 -0.0886 0.8137 -0.1479 -0.0562 -0.0395 0.0957 0.0748 0.2590 -0.0097 0.0124 -0.0071 0.1066 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 475 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 372 B 475 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0116 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3V4M _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 372-475 OF THE TARGET SEQUENCE. THE SEQUENCE NUMBERING IS BASED ON THE UNIPROTKB ID P26369 ISOFORM THAT MATCHES THE CANONICAL HUMAN ISOFORM FROM UNIPROT ID P26368. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 471 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 471 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 471 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.34 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.04 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 425 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -68.49 _pdbx_validate_torsion.psi 92.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 422 ? CG ? A ASP 52 CG 2 1 Y 1 A ASP 422 ? OD1 ? A ASP 52 OD1 3 1 Y 1 A ASP 422 ? OD2 ? A ASP 52 OD2 4 1 Y 1 B GLU 393 ? CG ? B GLU 23 CG 5 1 Y 1 B GLU 393 ? CD ? B GLU 23 CD 6 1 Y 1 B GLU 393 ? OE1 ? B GLU 23 OE1 7 1 Y 1 B GLU 393 ? OE2 ? B GLU 23 OE2 8 1 Y 1 B GLU 400 ? CG ? B GLU 30 CG 9 1 Y 1 B GLU 400 ? CD ? B GLU 30 CD 10 1 Y 1 B GLU 400 ? OE1 ? B GLU 30 OE1 11 1 Y 1 B GLU 400 ? OE2 ? B GLU 30 OE2 12 1 Y 1 B TRP 475 ? CG ? B TRP 105 CG 13 1 Y 1 B TRP 475 ? CD1 ? B TRP 105 CD1 14 1 Y 1 B TRP 475 ? CD2 ? B TRP 105 CD2 15 1 Y 1 B TRP 475 ? NE1 ? B TRP 105 NE1 16 1 Y 1 B TRP 475 ? CE2 ? B TRP 105 CE2 17 1 Y 1 B TRP 475 ? CE3 ? B TRP 105 CE3 18 1 Y 1 B TRP 475 ? CZ2 ? B TRP 105 CZ2 19 1 Y 1 B TRP 475 ? CZ3 ? B TRP 105 CZ3 20 1 Y 1 B TRP 475 ? CH2 ? B TRP 105 CH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SODIUM ION' NA 4 water HOH #