HEADER IMMUNE SYSTEM 15-DEC-11 3V52 TITLE STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 L CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, L-D ALPHA CHAIN; COMPND 9 CHAIN: P; COMPND 10 FRAGMENT: H-2LD PEPTIDE P46-53; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IG DOMAIN, 3-10 HELIX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.G.MAGE,M.A.DOLAN,R.WANG,L.F.BOYD,M.J.REVILLEZA,H.ROBINSON, AUTHOR 2 K.NATARAJAN,N.B.MYERS,T.H.HANSEN,D.H.MARGULIES REVDAT 2 01-AUG-12 3V52 1 JRNL REVDAT 1 25-JUL-12 3V52 0 JRNL AUTH M.G.MAGE,M.A.DOLAN,R.WANG,L.F.BOYD,M.J.REVILLEZA,H.ROBINSON, JRNL AUTH 2 K.NATARAJAN,N.B.MYERS,T.H.HANSEN,D.H.MARGULIES JRNL TITL THE PEPTIDE-RECEPTIVE TRANSITION STATE OF MHC CLASS I JRNL TITL 2 MOLECULES: INSIGHT FROM STRUCTURE AND MOLECULAR DYNAMICS. JRNL REF J.IMMUNOL. V. 189 1391 2012 JRNL REFN ISSN 0022-1767 JRNL PMID 22753930 JRNL DOI 10.4049/JIMMUNOL.1200831 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0833 - 4.4448 1.00 2779 128 0.1670 0.1846 REMARK 3 2 4.4448 - 3.5284 0.99 2642 152 0.1645 0.2011 REMARK 3 3 3.5284 - 3.0825 0.99 2623 148 0.1950 0.2115 REMARK 3 4 3.0825 - 2.8007 1.00 2653 141 0.2078 0.2538 REMARK 3 5 2.8007 - 2.6000 1.00 2636 146 0.2148 0.2282 REMARK 3 6 2.6000 - 2.4467 1.00 2641 153 0.2181 0.2378 REMARK 3 7 2.4467 - 2.3242 1.00 2595 157 0.2116 0.2614 REMARK 3 8 2.3242 - 2.2230 1.00 2630 149 0.2233 0.2382 REMARK 3 9 2.2230 - 2.1374 1.00 2604 159 0.2111 0.2551 REMARK 3 10 2.1374 - 2.0637 1.00 2619 147 0.2214 0.2474 REMARK 3 11 2.0637 - 1.9991 1.00 2644 99 0.2230 0.2929 REMARK 3 12 1.9991 - 1.9420 1.00 2628 136 0.2184 0.2433 REMARK 3 13 1.9420 - 1.8909 1.00 2645 136 0.2174 0.2371 REMARK 3 14 1.8909 - 1.8447 1.00 2583 131 0.2301 0.2602 REMARK 3 15 1.8447 - 1.8028 1.00 2652 144 0.2278 0.2633 REMARK 3 16 1.8028 - 1.7644 1.00 2598 148 0.2550 0.2854 REMARK 3 17 1.7644 - 1.7291 1.00 2622 122 0.2719 0.3663 REMARK 3 18 1.7291 - 1.6970 0.95 2492 127 0.2983 0.3547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 36.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.52370 REMARK 3 B22 (A**2) : -0.83740 REMARK 3 B33 (A**2) : -1.68640 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 2.77540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3438 REMARK 3 ANGLE : 1.201 4678 REMARK 3 CHIRALITY : 0.086 534 REMARK 3 PLANARITY : 0.006 593 REMARK 3 DIHEDRAL : 12.540 1215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'H' and (resseq 2:115) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2406 -8.7505 24.2947 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1650 REMARK 3 T33: 0.1973 T12: 0.0039 REMARK 3 T13: 0.0549 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 5.1762 L22: 3.1013 REMARK 3 L33: 3.3687 L12: -1.6933 REMARK 3 L13: 1.1717 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0003 S13: -0.3941 REMARK 3 S21: 0.0229 S22: -0.1464 S23: 0.2549 REMARK 3 S31: -0.1706 S32: -0.2993 S33: 0.1252 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'H' and (resseq 116:216) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3587 -3.5201 -6.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.2686 REMARK 3 T33: 0.2344 T12: 0.0385 REMARK 3 T13: 0.0447 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 1.6147 L22: 1.8087 REMARK 3 L33: 4.0460 L12: -0.9260 REMARK 3 L13: -0.9637 L23: 2.1553 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: 0.2549 S13: 0.0870 REMARK 3 S21: -0.0618 S22: -0.0491 S23: -0.0771 REMARK 3 S31: -0.0578 S32: -0.1156 S33: -0.0291 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'L' and (resseq 1:25) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8069 -9.0481 12.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.3403 REMARK 3 T33: 0.2201 T12: 0.0330 REMARK 3 T13: -0.0124 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.6425 L22: 2.6321 REMARK 3 L33: 5.7784 L12: -0.6069 REMARK 3 L13: 0.2730 L23: 1.8789 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: 0.8628 S13: 0.2387 REMARK 3 S21: -0.1421 S22: -0.2032 S23: -0.1826 REMARK 3 S31: -0.3172 S32: 0.2580 S33: -0.0481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'L' and (resseq 26:80) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7481 -17.1631 19.1648 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.1245 REMARK 3 T33: 0.2414 T12: 0.0245 REMARK 3 T13: -0.0254 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.1677 L22: 1.8146 REMARK 3 L33: 2.4000 L12: -0.8987 REMARK 3 L13: -0.0262 L23: -0.5976 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: 0.3610 S13: -0.4334 REMARK 3 S21: -0.0281 S22: -0.1064 S23: 0.0958 REMARK 3 S31: 0.2948 S32: -0.0032 S33: -0.0111 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'L' and (resseq 81:132) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8664 -6.6808 1.9565 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.3194 REMARK 3 T33: 0.1961 T12: 0.0808 REMARK 3 T13: 0.0151 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.0118 L22: 0.6671 REMARK 3 L33: 2.4828 L12: -0.2282 REMARK 3 L13: 1.4566 L23: -0.9399 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: 0.4698 S13: -0.0235 REMARK 3 S21: -0.0380 S22: -0.0962 S23: 0.0037 REMARK 3 S31: 0.0918 S32: 0.5695 S33: -0.1074 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'L' and (resseq 133:218) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3567 5.9549 -12.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.3824 REMARK 3 T33: 0.1929 T12: -0.0477 REMARK 3 T13: 0.0285 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.2064 L22: 2.7703 REMARK 3 L33: 2.5998 L12: -1.0632 REMARK 3 L13: 0.6136 L23: -1.1258 REMARK 3 S TENSOR REMARK 3 S11: 0.0893 S12: 0.1972 S13: 0.3296 REMARK 3 S21: -0.0755 S22: -0.0485 S23: -0.1575 REMARK 3 S31: -0.1724 S32: 0.7404 S33: -0.0458 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'P' and (resseq 46:53) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3811 -15.5837 34.8345 REMARK 3 T TENSOR REMARK 3 T11: 0.8164 T22: 0.6729 REMARK 3 T33: 0.6905 T12: -0.0981 REMARK 3 T13: -0.0123 T23: 0.2270 REMARK 3 L TENSOR REMARK 3 L11: 5.6702 L22: 8.0793 REMARK 3 L33: 4.0063 L12: 5.7510 REMARK 3 L13: 0.9123 L23: 2.9401 REMARK 3 S TENSOR REMARK 3 S11: 0.4566 S12: -0.2802 S13: -1.3290 REMARK 3 S21: 1.1772 S22: 0.4175 S23: -0.6023 REMARK 3 S31: 0.8185 S32: -0.4253 S33: -0.7072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB069604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING MONOCHROMATOR; REMARK 200 VERTICAL FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49812 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.697 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LISO4, 0.1M TRIS, 30% (W/V/) PEG REMARK 280 3000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.76200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.21150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.76200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.21150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 395 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL H 2 CG1 CG2 REMARK 470 GLU H 42 CG CD OE1 OE2 REMARK 470 LYS H 76 CG CD CE NZ REMARK 470 ASP H 134 CG OD1 OD2 REMARK 470 GLU H 175 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS L 202 O HOH L 438 2.06 REMARK 500 OG SER L 94 O HOH L 588 2.09 REMARK 500 O HOH H 340 O HOH H 426 2.13 REMARK 500 OD1 ASN L 149 O HOH L 613 2.15 REMARK 500 OH TYR L 37 O1 EDO L 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 426 O HOH H 426 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 3 117.33 74.74 REMARK 500 LYS H 43 -173.75 -175.70 REMARK 500 VAL L 56 -53.35 72.30 REMARK 500 HIS L 202 -23.24 -140.50 REMARK 500 LYS L 203 -16.08 89.71 REMARK 500 GLN P 48 -45.56 71.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS H 3 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO L 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UO1 RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN REMARK 900 RELATED ID: 3UYR RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN REMARK 900 RELATED ID: 3V4U RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN DBREF 3V52 P 46 53 UNP P01897 HA1L_MOUSE 70 77 DBREF 3V52 H 1 216 PDB 3V52 3V52 1 216 DBREF 3V52 L 1 218 PDB 3V52 3V52 1 218 SEQRES 1 H 216 GLU VAL LYS LEU VAL GLU SER GLU GLY GLY LEU VAL GLN SEQRES 2 H 216 PRO GLY SER SER MET LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 216 PHE THR PHE SER ASP TYR TYR MET ALA TRP VAL ARG GLN SEQRES 4 H 216 VAL PRO GLU LYS GLY LEU GLU TRP VAL ALA ASN ILE ASN SEQRES 5 H 216 TYR ASP GLY SER SER THR TYR TYR LEU ASP SER LEU LYS SEQRES 6 H 216 GLY ARG PHE ILE ILE SER ARG ASP ILE ALA LYS ASN ILE SEQRES 7 H 216 LEU TYR LEU GLN MET SER SER LEU ARG CYS GLU ASP THR SEQRES 8 H 216 ALA THR TYR TYR CYS ALA ARG LEU THR ASN GLY TYR LEU SEQRES 9 H 216 ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SER SER SEQRES 10 H 216 ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 216 GLY CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 216 CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL THR VAL SEQRES 13 H 216 THR TRP ASN SER GLY SER LEU SER SER SER VAL HIS THR SEQRES 14 H 216 PHE PRO ALA LEU LEU GLU SER GLY LEU TYR THR MET SER SEQRES 15 H 216 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLN SEQRES 16 H 216 THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 216 THR VAL ASP LYS LYS LEU GLU PRO SEQRES 1 L 218 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ASN LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 PHE CYS SER GLN SER THR HIS VAL PRO THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 P 8 GLU PRO GLN ALA PRO TRP MET GLU HET EDO L 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *345(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ASP H 62 LYS H 65 5 4 HELIX 3 3 ARG H 87 THR H 91 5 5 HELIX 4 4 SER H 160 SER H 162 5 3 HELIX 5 5 SER H 190 TRP H 192 5 3 HELIX 6 6 PRO H 204 SER H 207 5 4 HELIX 7 7 GLU L 84 LEU L 88 5 5 HELIX 8 8 SER L 125 SER L 131 1 7 HELIX 9 9 LYS L 187 GLU L 191 1 5 HELIX 10 10 ASN L 216 CYS L 218 5 3 HELIX 11 11 ALA P 49 GLU P 53 5 5 SHEET 1 A 4 LEU H 4 GLU H 6 0 SHEET 2 A 4 MET H 18 ALA H 24 -1 O THR H 23 N VAL H 5 SHEET 3 A 4 ILE H 78 MET H 83 -1 O MET H 83 N MET H 18 SHEET 4 A 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 B 6 GLY H 10 VAL H 12 0 SHEET 2 B 6 THR H 111 VAL H 115 1 O THR H 112 N GLY H 10 SHEET 3 B 6 ALA H 92 THR H 100 -1 N TYR H 94 O THR H 111 SHEET 4 B 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 58 TYR H 60 -1 O TYR H 59 N ASN H 50 SHEET 1 C 4 GLY H 10 VAL H 12 0 SHEET 2 C 4 THR H 111 VAL H 115 1 O THR H 112 N GLY H 10 SHEET 3 C 4 ALA H 92 THR H 100 -1 N TYR H 94 O THR H 111 SHEET 4 C 4 TYR H 103 TRP H 107 -1 O TYR H 103 N THR H 100 SHEET 1 D 4 SER H 124 LEU H 128 0 SHEET 2 D 4 SER H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 D 4 LEU H 178 PRO H 188 -1 O MET H 181 N VAL H 146 SHEET 4 D 4 VAL H 167 GLU H 175 -1 N GLU H 175 O LEU H 178 SHEET 1 E 3 THR H 155 TRP H 158 0 SHEET 2 E 3 THR H 198 HIS H 203 -1 O SER H 200 N THR H 157 SHEET 3 E 3 THR H 208 LYS H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 F 4 MET L 4 THR L 7 0 SHEET 2 F 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 F 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 F 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 G 6 SER L 10 SER L 14 0 SHEET 2 G 6 THR L 106 LYS L 111 1 O LYS L 107 N LEU L 11 SHEET 3 G 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 106 SHEET 4 G 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 G 6 PRO L 49 TYR L 54 -1 O ILE L 53 N TRP L 40 SHEET 6 G 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 H 4 SER L 10 SER L 14 0 SHEET 2 H 4 THR L 106 LYS L 111 1 O LYS L 107 N LEU L 11 SHEET 3 H 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 106 SHEET 4 H 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 95 SHEET 1 I 4 THR L 118 PHE L 122 0 SHEET 2 I 4 GLY L 133 PHE L 143 -1 O ASN L 141 N THR L 118 SHEET 3 I 4 TYR L 177 THR L 186 -1 O MET L 179 N LEU L 140 SHEET 4 I 4 VAL L 163 TRP L 167 -1 N LEU L 164 O THR L 182 SHEET 1 J 4 SER L 157 ARG L 159 0 SHEET 2 J 4 ASN L 149 ILE L 154 -1 N ILE L 154 O SER L 157 SHEET 3 J 4 SER L 195 THR L 201 -1 O THR L 201 N ASN L 149 SHEET 4 J 4 ILE L 209 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 132 CYS L 218 1555 1555 2.05 SSBOND 3 CYS H 144 CYS H 199 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 93 1555 1555 2.06 SSBOND 5 CYS L 138 CYS L 198 1555 1555 2.02 CISPEP 1 GLU H 42 LYS H 43 0 5.27 CISPEP 2 PHE H 150 PRO H 151 0 -6.09 CISPEP 3 GLU H 152 SER H 153 0 4.11 CISPEP 4 TRP H 192 PRO H 193 0 9.19 CISPEP 5 THR L 7 PRO L 8 0 -4.69 CISPEP 6 TYR L 144 PRO L 145 0 5.17 SITE 1 AC1 6 ASN H 101 ASN L 35 TYR L 37 LYS L 55 SITE 2 AC1 6 PRO P 47 PRO P 50 CRYST1 193.524 40.423 59.265 90.00 102.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005167 0.000000 0.001168 0.00000 SCALE2 0.000000 0.024738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017299 0.00000