HEADER IMMUNE SYSTEM 16-DEC-11 3V5K
TITLE HLA2.1 KVAELVWFL
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN;
COMPND 3 CHAIN: A, D;
COMPND 4 SYNONYM: MHC CLASS I ANTIGEN A*2;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN;
COMPND 8 CHAIN: B, E;
COMPND 9 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3;
COMPND 10 ENGINEERED: YES;
COMPND 11 MOL_ID: 3;
COMPND 12 MOLECULE: HIV-BASED ALTERED-PEPTIDE LIGAND KVAELVWFL;
COMPND 13 CHAIN: C, F;
COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HLA*0201, HLA-A, HLAA;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLM1;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 GENE: B2M, BETA-2-MICROGLOBULIN, CDABP0092, HDCMA22P;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PLM1;
SOURCE 21 MOL_ID: 3;
SOURCE 22 SYNTHETIC: YES;
SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN;
SOURCE 24 ORGANISM_COMMON: HOMO SAPIENS;
SOURCE 25 ORGANISM_TAXID: 9606;
SOURCE 26 OTHER_DETAILS: CHEMICALLY SYNTHESIZED PEPTIDE BASED ON SEQUENCE FROM
SOURCE 27 HIV
KEYWDS PEPTIDE-BINDING GROOVE, T CELL RECEPTOR, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR E.J.COLLINS,H.Y.LEE
REVDAT 3 09-OCT-24 3V5K 1 REMARK SEQADV
REVDAT 2 08-NOV-17 3V5K 1 REMARK
REVDAT 1 19-DEC-12 3V5K 0
JRNL AUTH E.J.COLLINS,H.Y.LEE
JRNL TITL PREDICTION OF IMMUNOGENICITY OF ALTERED-PEPTIDE LIGANDS TO
JRNL TITL 2 HIV BOUND TO MHC
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.31 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK,
REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5
REMARK 3 NUMBER OF REFLECTIONS : 35266
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.188
REMARK 3 R VALUE (WORKING SET) : 0.186
REMARK 3 FREE R VALUE : 0.228
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970
REMARK 3 FREE R VALUE TEST SET COUNT : 1754
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 18
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2773
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2066
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2629
REMARK 3 BIN R VALUE (WORKING SET) : 0.2032
REMARK 3 BIN FREE R VALUE : 0.2664
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6326
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 6
REMARK 3 SOLVENT ATOMS : 289
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.63
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.89370
REMARK 3 B22 (A**2) : -12.45570
REMARK 3 B33 (A**2) : 9.56200
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -1.28170
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.305
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.381
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 6532 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 8870 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2240 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 173 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 948 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 6532 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 797 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 7299 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 1.07
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.41
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.92
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|1 - 183}
REMARK 3 ORIGIN FOR THE GROUP (A): 5.9884 0.0471 35.8025
REMARK 3 T TENSOR
REMARK 3 T11: -0.1509 T22: -0.0119
REMARK 3 T33: -0.1064 T12: -0.0179
REMARK 3 T13: 0.0092 T23: 0.0223
REMARK 3 L TENSOR
REMARK 3 L11: 2.9517 L22: 0.8799
REMARK 3 L33: 2.3229 L12: 0.2498
REMARK 3 L13: 0.5504 L23: 0.4861
REMARK 3 S TENSOR
REMARK 3 S11: 0.0574 S12: 0.2632 S13: 0.1868
REMARK 3 S21: 0.0389 S22: -0.0321 S23: 0.1308
REMARK 3 S31: 0.1281 S32: -0.2763 S33: -0.0253
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|184 - 275}
REMARK 3 ORIGIN FOR THE GROUP (A): 37.5118 3.8751 19.1282
REMARK 3 T TENSOR
REMARK 3 T11: -0.0916 T22: 0.0116
REMARK 3 T33: -0.1431 T12: 0.0235
REMARK 3 T13: 0.0171 T23: 0.0157
REMARK 3 L TENSOR
REMARK 3 L11: 4.4134 L22: 0.7814
REMARK 3 L33: 5.6927 L12: 0.7350
REMARK 3 L13: -2.2821 L23: -0.2930
REMARK 3 S TENSOR
REMARK 3 S11: -0.0666 S12: 0.5443 S13: -0.0049
REMARK 3 S21: -0.1032 S22: 0.1556 S23: -0.0712
REMARK 3 S31: -0.2079 S32: -0.0356 S33: -0.0889
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {B|0 - 99}
REMARK 3 ORIGIN FOR THE GROUP (A): 26.5958 -14.2449 27.2031
REMARK 3 T TENSOR
REMARK 3 T11: -0.0439 T22: -0.0460
REMARK 3 T33: -0.0173 T12: -0.0176
REMARK 3 T13: -0.0144 T23: -0.0356
REMARK 3 L TENSOR
REMARK 3 L11: 2.4079 L22: 0.6918
REMARK 3 L33: 1.2237 L12: -0.2345
REMARK 3 L13: 0.1628 L23: -0.1941
REMARK 3 S TENSOR
REMARK 3 S11: -0.0086 S12: 0.2085 S13: -0.3909
REMARK 3 S21: -0.1719 S22: 0.0464 S23: -0.0675
REMARK 3 S31: 0.2299 S32: 0.0421 S33: -0.0378
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {C|1 - 9}
REMARK 3 ORIGIN FOR THE GROUP (A): -1.9797 0.8338 39.8728
REMARK 3 T TENSOR
REMARK 3 T11: -0.1042 T22: 0.0854
REMARK 3 T33: 0.0317 T12: -0.0581
REMARK 3 T13: 0.0319 T23: 0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 0.4869 L22: 0.0000
REMARK 3 L33: 0.8385 L12: 0.3739
REMARK 3 L13: -2.3280 L23: 2.9107
REMARK 3 S TENSOR
REMARK 3 S11: -0.0142 S12: -0.0280 S13: 0.0545
REMARK 3 S21: -0.1023 S22: 0.0368 S23: -0.0246
REMARK 3 S31: -0.0443 S32: -0.0283 S33: -0.0226
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {D|1 - 183}
REMARK 3 ORIGIN FOR THE GROUP (A): 25.4033 35.7321 19.2427
REMARK 3 T TENSOR
REMARK 3 T11: -0.1235 T22: -0.0370
REMARK 3 T33: -0.0897 T12: 0.0042
REMARK 3 T13: -0.0133 T23: -0.0159
REMARK 3 L TENSOR
REMARK 3 L11: 2.2964 L22: 0.7097
REMARK 3 L33: 2.5296 L12: 0.2289
REMARK 3 L13: -0.3318 L23: -0.2346
REMARK 3 S TENSOR
REMARK 3 S11: 0.1227 S12: 0.2324 S13: -0.0672
REMARK 3 S21: 0.0435 S22: -0.0078 S23: -0.1035
REMARK 3 S31: -0.0967 S32: 0.1954 S33: -0.1148
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: {D|184 - 275}
REMARK 3 ORIGIN FOR THE GROUP (A): -6.1554 31.9805 2.6670
REMARK 3 T TENSOR
REMARK 3 T11: -0.1020 T22: 0.0601
REMARK 3 T33: -0.2137 T12: 0.0658
REMARK 3 T13: -0.0182 T23: -0.0304
REMARK 3 L TENSOR
REMARK 3 L11: 3.9721 L22: 0.8554
REMARK 3 L33: 8.3193 L12: 0.1174
REMARK 3 L13: 2.7731 L23: 0.6726
REMARK 3 S TENSOR
REMARK 3 S11: 0.0475 S12: 0.4852 S13: -0.0698
REMARK 3 S21: 0.0033 S22: 0.1523 S23: 0.1068
REMARK 3 S31: 0.5444 S32: 0.1265 S33: -0.1998
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: {E|0 - 99}
REMARK 3 ORIGIN FOR THE GROUP (A): 4.7512 50.0515 10.7818
REMARK 3 T TENSOR
REMARK 3 T11: -0.0309 T22: 0.0149
REMARK 3 T33: -0.0777 T12: -0.0116
REMARK 3 T13: 0.0211 T23: 0.0199
REMARK 3 L TENSOR
REMARK 3 L11: 1.9394 L22: 0.9022
REMARK 3 L33: 1.1394 L12: -0.6679
REMARK 3 L13: -0.2305 L23: -0.1488
REMARK 3 S TENSOR
REMARK 3 S11: 0.0940 S12: 0.2266 S13: 0.1315
REMARK 3 S21: -0.0622 S22: -0.0248 S23: 0.0490
REMARK 3 S31: -0.1782 S32: -0.1078 S33: -0.0693
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: {F|1 - 9}
REMARK 3 ORIGIN FOR THE GROUP (A): 33.4572 34.9342 22.7646
REMARK 3 T TENSOR
REMARK 3 T11: -0.0478 T22: 0.0509
REMARK 3 T33: -0.0015 T12: -0.0120
REMARK 3 T13: -0.0336 T23: -0.0967
REMARK 3 L TENSOR
REMARK 3 L11: 0.6105 L22: 0.0000
REMARK 3 L33: 1.1382 L12: -1.3120
REMARK 3 L13: 0.6305 L23: -2.8765
REMARK 3 S TENSOR
REMARK 3 S11: -0.0079 S12: 0.0984 S13: -0.0498
REMARK 3 S21: 0.0031 S22: -0.0145 S23: 0.0115
REMARK 3 S31: 0.0817 S32: 0.0479 S33: 0.0224
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3V5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JAN-12.
REMARK 100 THE DEPOSITION ID IS D_1000069622.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 22-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35327
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2
REMARK 200 DATA REDUNDANCY : 3.900
REMARK 200 R MERGE (I) : 0.07900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 4.00
REMARK 200 R MERGE FOR SHELL (I) : 0.29400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.3.0
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.35
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM MES PH6.5 12% PEG 8000, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.53900
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18840 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 29 -124.60 50.01
REMARK 500 TYR A 123 -63.23 -105.99
REMARK 500 SER A 195 -169.27 -126.62
REMARK 500 TRP B 60 -5.01 77.84
REMARK 500 ASP D 29 -123.44 58.01
REMARK 500 TYR D 123 -62.93 -104.98
REMARK 500 SER D 195 -169.76 -124.76
REMARK 500 TRP E 60 -5.42 77.77
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 276
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3V5D RELATED DB: PDB
REMARK 900 RELATED ID: 3V5H RELATED DB: PDB
DBREF 3V5K A 1 275 UNP P01892 1A02_HUMAN 25 299
DBREF 3V5K B 1 99 UNP P61769 B2MG_HUMAN 21 119
DBREF 3V5K D 1 275 UNP P01892 1A02_HUMAN 25 299
DBREF 3V5K E 1 99 UNP P61769 B2MG_HUMAN 21 119
DBREF 3V5K C 1 9 PDB 3V5K 3V5K 1 9
DBREF 3V5K F 1 9 PDB 3V5K 3V5K 1 9
SEQADV 3V5K MET B 0 UNP P61769 EXPRESSION TAG
SEQADV 3V5K MET E 0 UNP P61769 EXPRESSION TAG
SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER
SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY
SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP
SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE
SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG
SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU
SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY
SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY
SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA
SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU
SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR
SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU
SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG
SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR
SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER
SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE
SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY
SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG
SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL
SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS
SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG
SEQRES 22 A 275 TRP GLU
SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG
SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS
SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP
SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS
SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU
SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU
SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO
SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET
SEQRES 1 C 9 LYS VAL ALA GLU LEU VAL TRP PHE LEU
SEQRES 1 D 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER
SEQRES 2 D 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY
SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP
SEQRES 4 D 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE
SEQRES 5 D 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG
SEQRES 6 D 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU
SEQRES 7 D 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY
SEQRES 8 D 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY
SEQRES 9 D 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA
SEQRES 10 D 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU
SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR
SEQRES 12 D 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU
SEQRES 13 D 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG
SEQRES 14 D 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR
SEQRES 15 D 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER
SEQRES 16 D 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE
SEQRES 17 D 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY
SEQRES 18 D 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG
SEQRES 19 D 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL
SEQRES 20 D 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS
SEQRES 21 D 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG
SEQRES 22 D 275 TRP GLU
SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG
SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS
SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP
SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS
SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU
SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU
SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO
SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET
SEQRES 1 F 9 LYS VAL ALA GLU LEU VAL TRP PHE LEU
HET GOL D 276 14
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 7 GOL C3 H8 O3
FORMUL 8 HOH *289(H2 O)
HELIX 1 1 ALA A 49 GLU A 53 5 5
HELIX 2 2 GLY A 56 TYR A 85 1 30
HELIX 3 3 ASP A 137 ALA A 150 1 14
HELIX 4 4 HIS A 151 GLY A 162 1 12
HELIX 5 5 GLY A 162 GLY A 175 1 14
HELIX 6 6 GLY A 175 GLN A 180 1 6
HELIX 7 7 GLN A 253 GLN A 255 5 3
HELIX 8 8 ALA D 49 GLU D 53 5 5
HELIX 9 9 GLY D 56 TYR D 85 1 30
HELIX 10 10 ASP D 137 ALA D 150 1 14
HELIX 11 11 HIS D 151 GLY D 162 1 12
HELIX 12 12 GLY D 162 GLY D 175 1 14
HELIX 13 13 GLY D 175 GLN D 180 1 6
HELIX 14 14 GLN D 253 GLN D 255 5 3
SHEET 1 A 8 GLU A 46 PRO A 47 0
SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46
SHEET 3 A 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31
SHEET 4 A 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25
SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 95 N SER A 11
SHEET 6 A 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98
SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LYS A 121 N TYR A 118
SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125
SHEET 1 B 4 LYS A 186 ALA A 193 0
SHEET 2 B 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188
SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203
SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246
SHEET 1 C 4 LYS A 186 ALA A 193 0
SHEET 2 C 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188
SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203
SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242
SHEET 1 D 4 GLU A 222 ASP A 223 0
SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222
SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216
SHEET 4 D 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259
SHEET 1 E 4 LYS B 6 SER B 11 0
SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10
SHEET 3 E 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25
SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67
SHEET 1 F 4 LYS B 6 SER B 11 0
SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10
SHEET 3 F 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25
SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63
SHEET 1 G 4 GLU B 44 ARG B 45 0
SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44
SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40
SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82
SHEET 1 H 8 GLU D 46 PRO D 47 0
SHEET 2 H 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46
SHEET 3 H 8 ARG D 21 VAL D 28 -1 N ALA D 24 O PHE D 36
SHEET 4 H 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27
SHEET 5 H 8 THR D 94 VAL D 103 -1 O VAL D 95 N SER D 11
SHEET 6 H 8 PHE D 109 TYR D 118 -1 O GLN D 115 N MET D 98
SHEET 7 H 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116
SHEET 8 H 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125
SHEET 1 I 4 LYS D 186 ALA D 193 0
SHEET 2 I 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192
SHEET 3 I 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199
SHEET 4 I 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246
SHEET 1 J 4 LYS D 186 ALA D 193 0
SHEET 2 J 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192
SHEET 3 J 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199
SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242
SHEET 1 K 4 GLU D 222 ASP D 223 0
SHEET 2 K 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222
SHEET 3 K 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216
SHEET 4 K 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259
SHEET 1 L 4 LYS E 6 SER E 11 0
SHEET 2 L 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10
SHEET 3 L 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25
SHEET 4 L 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67
SHEET 1 M 4 LYS E 6 SER E 11 0
SHEET 2 M 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10
SHEET 3 M 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25
SHEET 4 M 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63
SHEET 1 N 4 GLU E 44 ARG E 45 0
SHEET 2 N 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44
SHEET 3 N 4 TYR E 78 ASN E 83 -1 O ALA E 79 N LEU E 40
SHEET 4 N 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82
SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04
SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02
SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03
SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.05
SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.04
SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.02
CISPEP 1 TYR A 209 PRO A 210 0 0.40
CISPEP 2 HIS B 31 PRO B 32 0 -2.77
CISPEP 3 TYR D 209 PRO D 210 0 -1.59
CISPEP 4 HIS E 31 PRO E 32 0 -3.23
SITE 1 AC1 5 ARG D 44 MET D 45 PRO D 47 TRP D 60
SITE 2 AC1 5 HOH D 347
CRYST1 62.773 87.078 79.683 90.00 90.04 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015930 0.000000 0.000011 0.00000
SCALE2 0.000000 0.011484 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012550 0.00000