HEADER METAL TRANSPORT 16-DEC-11 3V5U TITLE STRUCTURE OF SODIUM/CALCIUM EXCHANGER FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII DSM 2661 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED MEMBRANE PROTEIN MJ0091; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 GENE: MJ0091; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS LIPID CUBIC PHASE, CATION PROTEIN COMPLEX, SODIUM, CALCIUM EXCHANGER, KEYWDS 2 MEMBRANE PROTEIN, ALPHA HELICAL, SUPERFAMILY OF CATION, CATION KEYWDS 3 BINDING, MEMBRANE, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIANG,J.LIAO,H.LI,W.ZENG,D.SAUER,R.BELMARES REVDAT 2 28-FEB-24 3V5U 1 REMARK SEQADV LINK REVDAT 1 22-FEB-12 3V5U 0 JRNL AUTH J.LIAO,H.LI,W.ZENG,D.B.SAUER,R.BELMARES,Y.JIANG JRNL TITL STRUCTURAL INSIGHT INTO THE ION-EXCHANGE MECHANISM OF THE JRNL TITL 2 SODIUM/CALCIUM EXCHANGER. JRNL REF SCIENCE V. 335 686 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22323814 JRNL DOI 10.1126/SCIENCE.1215759 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 26548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6801 - 4.0863 0.99 2752 212 0.2135 0.2071 REMARK 3 2 4.0863 - 3.2440 0.99 2634 203 0.1796 0.2004 REMARK 3 3 3.2440 - 2.8341 0.98 2593 200 0.1698 0.2102 REMARK 3 4 2.8341 - 2.5750 0.97 2543 196 0.1591 0.2217 REMARK 3 5 2.5750 - 2.3905 0.96 2510 195 0.1597 0.1843 REMARK 3 6 2.3905 - 2.2495 0.95 2460 191 0.1541 0.2212 REMARK 3 7 2.2495 - 2.1369 0.93 2410 185 0.1590 0.2088 REMARK 3 8 2.1369 - 2.0439 0.90 2347 178 0.1664 0.1948 REMARK 3 9 2.0439 - 1.9652 0.89 2282 179 0.1822 0.2312 REMARK 3 10 1.9652 - 1.9000 0.82 2117 161 0.2138 0.2454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 80.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.17130 REMARK 3 B22 (A**2) : -4.50100 REMARK 3 B33 (A**2) : -4.67030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2510 REMARK 3 ANGLE : 1.375 3321 REMARK 3 CHIRALITY : 0.059 388 REMARK 3 PLANARITY : 0.004 384 REMARK 3 DIHEDRAL : 9.761 967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-11; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 1.8458 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SIRAS; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% (V/V) PEG400, 0.1-0.2 M NAAC, 0.1 REMARK 280 M MES PH 6.5, LIPIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.10300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.43950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.10300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.43950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 149 REMARK 465 ILE A 150 REMARK 465 GLU A 151 REMARK 465 GLU A 152 REMARK 465 ASN A 153 REMARK 465 ASN A 154 REMARK 465 ASP A 155 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 VAL A 307 REMARK 465 PRO A 308 REMARK 465 ARG A 309 REMARK 465 GLY A 310 REMARK 465 SER A 311 REMARK 465 ARG A 312 REMARK 465 SER A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 44 -87.39 -117.75 REMARK 500 HIS A 65 32.44 70.54 REMARK 500 SER A 278 -129.77 -139.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MYS A 714 REMARK 610 MYS A 715 REMARK 610 MYS A 717 REMARK 610 MYS A 720 REMARK 610 MYS A 721 REMARK 610 MYS A 722 REMARK 610 OLC A 723 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 47 O REMARK 620 2 THR A 50 OG1 84.9 REMARK 620 3 SER A 51 OG 83.7 148.7 REMARK 620 4 GLU A 213 OE2 149.7 86.8 88.5 REMARK 620 5 SER A 236 OG 106.4 101.3 109.9 103.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 50 O REMARK 620 2 GLU A 54 OE1 96.3 REMARK 620 3 GLU A 54 OE2 145.2 52.1 REMARK 620 4 THR A 209 O 126.3 100.2 79.0 REMARK 620 5 GLU A 213 OE1 97.6 149.6 105.0 93.1 REMARK 620 6 GLU A 213 OE2 75.6 104.7 96.9 144.6 53.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 SER A 77 OG 101.8 REMARK 620 3 ALA A 206 O 153.4 104.3 REMARK 620 4 THR A 209 OG1 86.8 102.3 82.8 REMARK 620 5 SER A 210 OG 91.8 110.2 84.0 147.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 ASN A 81 OD1 141.6 REMARK 620 3 GLU A 213 OE2 87.3 115.7 REMARK 620 4 ASP A 240 OD2 103.7 78.6 140.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 118 O REMARK 620 2 ASP A 121 OD1 84.1 REMARK 620 3 GLY A 122 O 89.1 88.5 REMARK 620 4 ASP A 127 OD2 101.1 174.6 90.0 REMARK 620 5 OLC A 710 O25 87.2 103.4 167.0 78.5 REMARK 620 6 HOH A 849 O 173.1 89.0 90.4 85.8 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 722 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 723 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 724 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V5S RELATED DB: PDB REMARK 900 STRUCTURE OF SODIUM/CALCIUM EXCHANGER FROM METHANOCOCCUS JANNASCHII DBREF 3V5U A 1 302 UNP Q57556 Y091_METJA 1 302 SEQADV 3V5U VAL A 2 UNP Q57556 LEU 2 ENGINEERED MUTATION SEQADV 3V5U GLY A 303 UNP Q57556 EXPRESSION TAG SEQADV 3V5U GLY A 304 UNP Q57556 EXPRESSION TAG SEQADV 3V5U SER A 305 UNP Q57556 EXPRESSION TAG SEQADV 3V5U LEU A 306 UNP Q57556 EXPRESSION TAG SEQADV 3V5U VAL A 307 UNP Q57556 EXPRESSION TAG SEQADV 3V5U PRO A 308 UNP Q57556 EXPRESSION TAG SEQADV 3V5U ARG A 309 UNP Q57556 EXPRESSION TAG SEQADV 3V5U GLY A 310 UNP Q57556 EXPRESSION TAG SEQADV 3V5U SER A 311 UNP Q57556 EXPRESSION TAG SEQADV 3V5U ARG A 312 UNP Q57556 EXPRESSION TAG SEQADV 3V5U SER A 313 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 314 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 315 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 316 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 317 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 318 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 319 UNP Q57556 EXPRESSION TAG SEQADV 3V5U HIS A 320 UNP Q57556 EXPRESSION TAG SEQRES 1 A 320 MET VAL ILE LEU GLY VAL GLY TYR PHE LEU LEU GLY LEU SEQRES 2 A 320 ILE LEU LEU TYR TYR GLY SER ASP TRP PHE VAL LEU GLY SEQRES 3 A 320 SER GLU ARG ILE ALA ARG HIS PHE ASN VAL SER ASN PHE SEQRES 4 A 320 VAL ILE GLY ALA THR VAL MET ALA ILE GLY THR SER LEU SEQRES 5 A 320 PRO GLU ILE LEU THR SER ALA TYR ALA SER TYR MET HIS SEQRES 6 A 320 ALA PRO GLY ILE SER ILE GLY ASN ALA ILE GLY SER CYS SEQRES 7 A 320 ILE CYS ASN ILE GLY LEU VAL LEU GLY LEU SER ALA ILE SEQRES 8 A 320 ILE SER PRO ILE ILE VAL ASP LYS ASN LEU GLN LYS ASN SEQRES 9 A 320 ILE LEU VAL TYR LEU LEU PHE VAL ILE PHE ALA ALA VAL SEQRES 10 A 320 ILE GLY ILE ASP GLY PHE SER TRP ILE ASP GLY VAL VAL SEQRES 11 A 320 LEU LEU ILE LEU PHE ILE ILE TYR LEU ARG TRP THR VAL SEQRES 12 A 320 LYS ASN GLY SER ALA GLU ILE GLU GLU ASN ASN ASP LYS SEQRES 13 A 320 ASN ASN PRO SER VAL VAL PHE SER LEU VAL LEU LEU ILE SEQRES 14 A 320 ILE GLY LEU ILE GLY VAL LEU VAL GLY ALA GLU LEU PHE SEQRES 15 A 320 VAL ASP GLY ALA LYS LYS ILE ALA LEU ALA LEU ASP ILE SEQRES 16 A 320 SER ASP LYS VAL ILE GLY PHE THR LEU VAL ALA PHE GLY SEQRES 17 A 320 THR SER LEU PRO GLU LEU MET VAL SER LEU ALA ALA ALA SEQRES 18 A 320 LYS ARG ASN LEU GLY GLY MET VAL LEU GLY ASN VAL ILE SEQRES 19 A 320 GLY SER ASN ILE ALA ASP ILE GLY GLY ALA LEU ALA VAL SEQRES 20 A 320 GLY SER LEU PHE MET HIS LEU PRO ALA GLU ASN VAL GLN SEQRES 21 A 320 MET ALA VAL LEU VAL ILE MET SER LEU LEU LEU TYR LEU SEQRES 22 A 320 PHE ALA LYS TYR SER LYS ILE GLY ARG TRP GLN GLY ILE SEQRES 23 A 320 LEU PHE LEU ALA LEU TYR ILE ILE ALA ILE ALA SER LEU SEQRES 24 A 320 ARG MET GLY GLY GLY SER LEU VAL PRO ARG GLY SER ARG SEQRES 25 A 320 SER HIS HIS HIS HIS HIS HIS HIS HET NA A 701 1 HET CA A 702 1 HET NA A 703 1 HET NA A 704 1 HET CA A 705 1 HET ACT A 706 4 HET ACT A 707 4 HET ACT A 708 4 HET ACT A 709 4 HET OLC A 710 25 HET OLC A 711 25 HET OLC A 712 25 HET MYS A 713 15 HET MYS A 714 12 HET MYS A 715 10 HET 1PE A 716 16 HET MYS A 717 5 HET MYS A 718 15 HET MYS A 719 15 HET MYS A 720 14 HET MYS A 721 5 HET MYS A 722 14 HET OLC A 723 20 HET OLC A 724 25 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM MYS PENTADECANE HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN 1PE PEG400 FORMUL 2 NA 3(NA 1+) FORMUL 3 CA 2(CA 2+) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 11 OLC 5(C21 H40 O4) FORMUL 14 MYS 9(C15 H32) FORMUL 17 1PE C10 H22 O6 FORMUL 26 HOH *99(H2 O) HELIX 1 1 MET A 1 ASN A 35 1 35 HELIX 2 2 SER A 37 THR A 44 1 8 HELIX 3 3 THR A 44 MET A 64 1 21 HELIX 4 4 ALA A 66 LEU A 84 1 19 HELIX 5 5 LEU A 84 SER A 93 1 10 HELIX 6 6 ASP A 98 GLY A 119 1 22 HELIX 7 7 SER A 124 GLY A 146 1 23 HELIX 8 8 ASN A 158 LEU A 193 1 36 HELIX 9 9 ASP A 197 LEU A 204 1 8 HELIX 10 10 LEU A 204 SER A 210 1 7 HELIX 11 11 SER A 210 ARG A 223 1 14 HELIX 12 12 LEU A 225 GLY A 243 1 19 HELIX 13 13 GLY A 243 MET A 252 1 10 HELIX 14 14 GLU A 257 SER A 278 1 22 HELIX 15 15 GLY A 281 LEU A 299 1 19 LINK O ALA A 47 NA NA A 701 1555 1555 2.42 LINK OG1 THR A 50 NA NA A 701 1555 1555 2.45 LINK O THR A 50 CA CA A 702 1555 1555 2.32 LINK OG SER A 51 NA NA A 701 1555 1555 2.48 LINK OE1 GLU A 54 CA CA A 702 1555 1555 2.36 LINK OE2 GLU A 54 CA CA A 702 1555 1555 2.55 LINK OE2 GLU A 54 NA NA A 703 1555 1555 2.38 LINK OE2 GLU A 54 NA NA A 704 1555 1555 2.74 LINK OG SER A 77 NA NA A 703 1555 1555 2.33 LINK OD1 ASN A 81 NA NA A 704 1555 1555 2.93 LINK O ILE A 118 CA CA A 705 1555 1555 2.35 LINK OD1 ASP A 121 CA CA A 705 1555 1555 2.50 LINK O GLY A 122 CA CA A 705 1555 1555 2.39 LINK OD2 ASP A 127 CA CA A 705 1555 1555 2.47 LINK O ALA A 206 NA NA A 703 1555 1555 2.40 LINK O THR A 209 CA CA A 702 1555 1555 2.31 LINK OG1 THR A 209 NA NA A 703 1555 1555 2.49 LINK OG SER A 210 NA NA A 703 1555 1555 2.51 LINK OE2 GLU A 213 NA NA A 701 1555 1555 2.26 LINK OE1 GLU A 213 CA CA A 702 1555 1555 2.31 LINK OE2 GLU A 213 CA CA A 702 1555 1555 2.54 LINK OE2 GLU A 213 NA NA A 704 1555 1555 2.78 LINK OG SER A 236 NA NA A 701 1555 1555 2.43 LINK OD2 ASP A 240 NA NA A 704 1555 1555 2.65 LINK CA CA A 705 O25 OLC A 710 1555 1555 2.53 LINK CA CA A 705 O HOH A 849 1555 1555 2.56 SITE 1 AC1 5 ALA A 47 THR A 50 SER A 51 GLU A 213 SITE 2 AC1 5 SER A 236 SITE 1 AC2 5 THR A 50 GLU A 54 THR A 209 GLU A 213 SITE 2 AC2 5 NA A 704 SITE 1 AC3 5 GLU A 54 SER A 77 ALA A 206 THR A 209 SITE 2 AC3 5 SER A 210 SITE 1 AC4 6 SER A 51 GLU A 54 ASN A 81 GLU A 213 SITE 2 AC4 6 ASP A 240 CA A 702 SITE 1 AC5 6 ILE A 118 ASP A 121 GLY A 122 ASP A 127 SITE 2 AC5 6 OLC A 710 HOH A 849 SITE 1 AC6 2 ILE A 14 HOH A 897 SITE 1 AC7 1 TYR A 60 SITE 1 AC8 2 LEU A 193 HOH A 896 SITE 1 AC9 4 ASN A 35 LYS A 279 HOH A 804 HOH A 821 SITE 1 BC1 8 VAL A 117 ILE A 118 ASP A 121 ASP A 127 SITE 2 BC1 8 ALA A 186 CA A 705 OLC A 711 OLC A 712 SITE 1 BC2 7 PHE A 114 ASP A 127 LEU A 134 TYR A 138 SITE 2 BC2 7 OLC A 710 OLC A 724 HOH A 853 SITE 1 BC3 6 PHE A 182 ALA A 190 ASP A 197 LYS A 198 SITE 2 BC3 6 GLY A 201 OLC A 710 SITE 1 BC4 2 ALA A 116 ASN A 258 SITE 1 BC5 1 VAL A 143 SITE 1 BC6 2 TRP A 283 ILE A 286 SITE 1 BC7 6 TYR A 17 SER A 20 MET A 215 ALA A 219 SITE 2 BC7 6 LYS A 222 OLC A 724 SITE 1 BC8 5 ILE A 136 ARG A 140 ALA A 297 MYS A 722 SITE 2 BC8 5 HOH A 875 SITE 1 BC9 3 ILE A 91 LEU A 250 ILE A 293 SITE 1 CC1 5 VAL A 259 SER A 298 LEU A 299 ARG A 300 SITE 2 CC1 5 HOH A 806 SITE 1 CC2 3 ALA A 297 SER A 298 MYS A 718 SITE 1 CC3 7 LEU A 52 PRO A 53 LEU A 56 LEU A 172 SITE 2 CC3 7 LEU A 176 ALA A 179 GLU A 180 SITE 1 CC4 15 TYR A 17 CYS A 80 LEU A 88 VAL A 130 SITE 2 CC4 15 ILE A 133 ILE A 137 THR A 203 LEU A 204 SITE 3 CC4 15 ALA A 206 PHE A 207 TYR A 292 OLC A 711 SITE 4 CC4 15 1PE A 716 HOH A 812 HOH A 871 CRYST1 49.490 72.879 96.206 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010394 0.00000