HEADER GENE REGULATION 17-DEC-11 3V5Z TITLE STRUCTURE OF FBXL5 HEMERYTHRIN DOMAIN, C2 CELL, GROWN ANAEROBICALLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX/LRR-REPEAT PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEMERYTHRIN DOMAIN (UNP RESIDUES 1-161); COMPND 5 SYNONYM: F-BOX AND LEUCINE-RICH REPEAT PROTEIN 5, F-BOX PROTEIN COMPND 6 FBL4/FBL5, P45SKP2-LIKE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FBL4, FBL5, FBXL5, FLR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGST-PARALLEL KEYWDS HEMERYTHRIN, ALPHA HELICAL BUNDLE, E3 UBIQUITIN LIGASE COMPLEX, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,R.K.BRUICK,J.W.THOMPSON,C.A.BRAUTIGAM REVDAT 5 13-SEP-23 3V5Z 1 REMARK LINK REVDAT 4 08-NOV-17 3V5Z 1 REMARK REVDAT 3 21-MAR-12 3V5Z 1 JRNL REVDAT 2 01-FEB-12 3V5Z 1 JRNL REVDAT 1 25-JAN-12 3V5Z 0 JRNL AUTH J.W.THOMPSON,A.A.SALAHUDEEN,S.CHOLLANGI,J.C.RUIZ, JRNL AUTH 2 C.A.BRAUTIGAM,T.M.MAKRIS,J.D.LIPSCOMB,D.R.TOMCHICK, JRNL AUTH 3 R.K.BRUICK JRNL TITL STRUCTURAL AND MOLECULAR CHARACTERIZATION OF IRON-SENSING JRNL TITL 2 HEMERYTHRIN-LIKE DOMAIN WITHIN F-BOX AND LEUCINE-RICH REPEAT JRNL TITL 3 PROTEIN 5 (FBXL5). JRNL REF J.BIOL.CHEM. V. 287 7357 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22253436 JRNL DOI 10.1074/JBC.M111.308684 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.A.SALAHUDEEN,J.W.THOMPSON,J.C.RUIZ,H.W.MA,L.N.KINCH,Q.LI, REMARK 1 AUTH 2 N.V.GRISHIN,R.K.BRUICK REMARK 1 TITL AN E3 LIGASE POSSESSING AN IRON-RESPONSIVE HEMERYTHRIN REMARK 1 TITL 2 DOMAIN IS A REGULATOR OF IRON HOMEOSTASIS. REMARK 1 REF SCIENCE V. 326 722 2009 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 19762597 REMARK 1 DOI 10.1126/SCIENCE.1176326 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 16694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8343 - 3.9680 0.98 2676 148 0.1672 0.1996 REMARK 3 2 3.9680 - 3.1503 1.00 2675 151 0.1684 0.2158 REMARK 3 3 3.1503 - 2.7523 1.00 2664 140 0.1779 0.2615 REMARK 3 4 2.7523 - 2.5007 1.00 2669 148 0.1913 0.2357 REMARK 3 5 2.5007 - 2.3215 1.00 2652 120 0.2030 0.2545 REMARK 3 6 2.3215 - 2.1847 0.95 2542 109 0.2393 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 51.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.30380 REMARK 3 B22 (A**2) : -2.31770 REMARK 3 B33 (A**2) : -2.98610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -9.71580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2724 REMARK 3 ANGLE : 1.012 3656 REMARK 3 CHIRALITY : 0.076 381 REMARK 3 PLANARITY : 0.004 473 REMARK 3 DIHEDRAL : 15.636 1050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:31) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2239 14.5003 35.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.4846 REMARK 3 T33: 0.3572 T12: -0.0044 REMARK 3 T13: 0.0855 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 4.0360 L22: 5.1141 REMARK 3 L33: 4.3498 L12: -1.1620 REMARK 3 L13: 2.8414 L23: -0.6111 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: -0.9676 S13: 0.0737 REMARK 3 S21: 1.0983 S22: 0.3545 S23: 0.1834 REMARK 3 S31: -0.4644 S32: -0.8759 S33: -0.1558 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 32:64) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2633 20.3926 23.2132 REMARK 3 T TENSOR REMARK 3 T11: 0.4556 T22: 0.3701 REMARK 3 T33: 0.4487 T12: -0.0285 REMARK 3 T13: -0.0268 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.8910 L22: 5.0858 REMARK 3 L33: 4.2509 L12: -1.4089 REMARK 3 L13: 1.5041 L23: -1.0456 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0938 S13: 0.1579 REMARK 3 S21: -0.1495 S22: -0.1174 S23: 0.0192 REMARK 3 S31: -0.4465 S32: 0.0592 S33: 0.1020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 65:84) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9114 -4.1607 28.3156 REMARK 3 T TENSOR REMARK 3 T11: 0.8889 T22: 0.5990 REMARK 3 T33: 0.8878 T12: 0.0119 REMARK 3 T13: -0.2611 T23: -0.1820 REMARK 3 L TENSOR REMARK 3 L11: 3.4996 L22: 3.6258 REMARK 3 L33: 2.0358 L12: 0.2286 REMARK 3 L13: -0.2463 L23: 0.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.8146 S12: 1.2797 S13: -1.8991 REMARK 3 S21: -1.2711 S22: 0.1045 S23: 0.1657 REMARK 3 S31: 1.5260 S32: 0.0525 S33: -1.1153 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 85:99) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3663 19.6897 13.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.5849 T22: 0.5658 REMARK 3 T33: 0.4001 T12: -0.0058 REMARK 3 T13: -0.0160 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 4.6632 L22: 2.7266 REMARK 3 L33: 7.3484 L12: 1.7088 REMARK 3 L13: -1.3755 L23: -4.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.4450 S12: 0.6740 S13: -0.1839 REMARK 3 S21: -1.6741 S22: 0.3138 S23: -0.2222 REMARK 3 S31: 0.4500 S32: 0.0486 S33: 0.0396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 100:114) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0074 25.2021 9.8993 REMARK 3 T TENSOR REMARK 3 T11: 0.5998 T22: 0.5508 REMARK 3 T33: 0.5362 T12: 0.1314 REMARK 3 T13: -0.1101 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.8722 L22: 4.6700 REMARK 3 L33: 5.1344 L12: -2.1069 REMARK 3 L13: 1.4734 L23: -2.8064 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.1057 S13: -0.5877 REMARK 3 S21: -0.1290 S22: 0.3656 S23: -0.0278 REMARK 3 S31: -0.3088 S32: -0.4615 S33: -0.2725 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 115:132) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1110 7.8169 27.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.6481 REMARK 3 T33: 0.6052 T12: -0.0881 REMARK 3 T13: -0.1010 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.0154 L22: 5.9482 REMARK 3 L33: 7.2389 L12: -1.1886 REMARK 3 L13: 1.9290 L23: -4.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.2802 S12: -0.4604 S13: -0.6519 REMARK 3 S21: -0.3607 S22: 0.4697 S23: 1.1709 REMARK 3 S31: 0.4338 S32: -1.4502 S33: -0.6492 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 133:143) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3823 -5.2231 39.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.7199 T22: 0.5108 REMARK 3 T33: 0.6851 T12: -0.2101 REMARK 3 T13: -0.2195 T23: 0.1561 REMARK 3 L TENSOR REMARK 3 L11: 6.4934 L22: 1.8940 REMARK 3 L33: 3.0258 L12: -1.4527 REMARK 3 L13: 4.0880 L23: -1.7981 REMARK 3 S TENSOR REMARK 3 S11: 0.7518 S12: -0.9308 S13: -1.7994 REMARK 3 S21: -0.1655 S22: 0.3021 S23: 0.3799 REMARK 3 S31: 1.3196 S32: -0.6170 S33: -0.9671 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 144:159) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8284 6.3004 41.4445 REMARK 3 T TENSOR REMARK 3 T11: 0.6517 T22: 0.4545 REMARK 3 T33: 0.5227 T12: -0.0610 REMARK 3 T13: -0.1100 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.5029 L22: 2.6676 REMARK 3 L33: 4.5903 L12: 1.2018 REMARK 3 L13: -0.7948 L23: -3.1825 REMARK 3 S TENSOR REMARK 3 S11: 0.1855 S12: -0.2148 S13: -0.5574 REMARK 3 S21: 1.5763 S22: -0.0035 S23: -0.7542 REMARK 3 S31: -0.3913 S32: -0.0034 S33: -0.0383 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 4:31) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1119 -4.0722 3.6907 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.4547 REMARK 3 T33: 0.4317 T12: -0.0012 REMARK 3 T13: 0.0467 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.5303 L22: 6.5876 REMARK 3 L33: 7.4955 L12: -0.0969 REMARK 3 L13: 0.9498 L23: -4.5897 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0447 S13: -0.0876 REMARK 3 S21: -0.3323 S22: 0.7955 S23: 0.9865 REMARK 3 S31: 0.3716 S32: -1.3068 S33: -0.6153 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 32:67) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7611 -8.9540 8.5474 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.3402 REMARK 3 T33: 0.3597 T12: 0.0201 REMARK 3 T13: 0.0258 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.3159 L22: 6.6994 REMARK 3 L33: 5.7354 L12: -1.1203 REMARK 3 L13: 2.1220 L23: -3.1371 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.0859 S13: -0.0742 REMARK 3 S21: -0.1376 S22: -0.3054 S23: -0.4662 REMARK 3 S31: 0.4341 S32: 0.0588 S33: 0.3264 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 68:85) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8837 13.7540 2.7119 REMARK 3 T TENSOR REMARK 3 T11: 1.1971 T22: 0.5256 REMARK 3 T33: 0.6826 T12: -0.2560 REMARK 3 T13: -0.1333 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.7036 L22: 3.7156 REMARK 3 L33: 2.0915 L12: -1.6058 REMARK 3 L13: 1.1706 L23: -2.7753 REMARK 3 S TENSOR REMARK 3 S11: -0.4459 S12: -0.4375 S13: 0.6515 REMARK 3 S21: 2.8031 S22: -0.2825 S23: -1.2526 REMARK 3 S31: -2.8507 S32: 1.1951 S33: 0.8989 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 86:99) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5846 -10.2356 16.0674 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.4726 REMARK 3 T33: 0.6427 T12: -0.0617 REMARK 3 T13: -0.0786 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 5.9118 L22: 7.0843 REMARK 3 L33: 5.6272 L12: -5.3867 REMARK 3 L13: 0.3670 L23: -1.0447 REMARK 3 S TENSOR REMARK 3 S11: -0.7075 S12: -0.2829 S13: 0.9466 REMARK 3 S21: 0.8007 S22: 0.8324 S23: -1.9942 REMARK 3 S31: -0.2066 S32: 0.8025 S33: 0.1000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 100:114) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2418 -14.8650 26.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.5781 T22: 0.4737 REMARK 3 T33: 0.4171 T12: -0.0533 REMARK 3 T13: -0.0022 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.3267 L22: 8.1836 REMARK 3 L33: 6.6222 L12: -2.1018 REMARK 3 L13: 2.9379 L23: -5.8719 REMARK 3 S TENSOR REMARK 3 S11: -0.2027 S12: -0.6097 S13: 0.7885 REMARK 3 S21: 0.3236 S22: -0.0693 S23: -1.1105 REMARK 3 S31: -0.2773 S32: -0.3621 S33: 0.2209 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 115:131) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1752 2.1889 12.6122 REMARK 3 T TENSOR REMARK 3 T11: 0.3848 T22: 0.4709 REMARK 3 T33: 0.3943 T12: 0.0863 REMARK 3 T13: 0.0664 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.5696 L22: 9.0488 REMARK 3 L33: 8.0988 L12: -3.4010 REMARK 3 L13: 3.6435 L23: -5.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.4359 S12: -0.2215 S13: 0.5278 REMARK 3 S21: 0.9755 S22: 0.3296 S23: -0.4040 REMARK 3 S31: -1.2441 S32: -0.6924 S33: -0.1610 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 132:144) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4477 14.7520 -4.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.5962 T22: 0.4260 REMARK 3 T33: 0.6009 T12: 0.1538 REMARK 3 T13: 0.1020 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.8053 L22: 3.7809 REMARK 3 L33: 9.3794 L12: -0.4372 REMARK 3 L13: 0.1013 L23: -0.9999 REMARK 3 S TENSOR REMARK 3 S11: 0.3949 S12: -0.0556 S13: 0.4212 REMARK 3 S21: 0.2173 S22: 0.3005 S23: 0.7218 REMARK 3 S31: -1.5145 S32: -0.6030 S33: -0.2968 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 145:160) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7835 2.5091 -10.4292 REMARK 3 T TENSOR REMARK 3 T11: 0.7167 T22: 0.4850 REMARK 3 T33: 0.3631 T12: 0.1100 REMARK 3 T13: -0.0031 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 3.8913 L22: 3.3794 REMARK 3 L33: 5.8240 L12: -1.8089 REMARK 3 L13: 0.4041 L23: -3.6869 REMARK 3 S TENSOR REMARK 3 S11: 0.2686 S12: 0.2506 S13: 0.3911 REMARK 3 S21: -2.6558 S22: -0.3789 S23: -0.4292 REMARK 3 S31: 0.8417 S32: -0.1061 S33: 0.1071 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 201) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1296 6.4227 30.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.5312 T22: 0.5964 REMARK 3 T33: 0.5793 T12: -0.0108 REMARK 3 T13: 0.0554 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.3282 L22: 4.9023 REMARK 3 L33: 2.7709 L12: 2.8855 REMARK 3 L13: 2.6485 L23: -0.5209 REMARK 3 S TENSOR REMARK 3 S11: 4.0185 S12: 5.4137 S13: -1.2798 REMARK 3 S21: -13.3895 S22: -11.9949 S23: 5.1284 REMARK 3 S31: -25.7092 S32: -26.3876 S33: 8.0943 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 201) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4572 3.8736 4.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.4861 T22: 0.4919 REMARK 3 T33: 0.7074 T12: 0.0094 REMARK 3 T13: -0.0629 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 2.4953 L22: 2.0466 REMARK 3 L33: 2.0386 L12: 2.2597 REMARK 3 L13: 2.2555 L23: 2.0425 REMARK 3 S TENSOR REMARK 3 S11: 17.4672 S12: -21.3794 S13: -23.2341 REMARK 3 S21: 9.7803 S22: -8.5772 S23: -12.1280 REMARK 3 S31: 8.5659 S32: -12.4331 S33: -9.0367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.184 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3V5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000, 0.1 M HEPES, 30% REMARK 280 ETHYLENE GLYCOL, 2M NA(2)S(2)O(4), PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.22100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.22100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 SER A 81 REMARK 465 ASP A 82 REMARK 465 SER A 160 REMARK 465 GLN A 161 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 SER B 81 REMARK 465 ASP B 82 REMARK 465 GLN B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 65 -64.02 -125.03 REMARK 500 TYR A 77 -33.05 -147.97 REMARK 500 ILE B 65 -62.65 -123.52 REMARK 500 TYR B 77 -34.27 -135.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 FEO A 201 O 130.8 REMARK 620 3 HIS A 57 NE2 99.8 95.8 REMARK 620 4 GLU A 61 OE2 107.4 119.0 90.2 REMARK 620 5 GLU A 61 OE1 156.3 72.9 75.3 50.3 REMARK 620 6 GLU A 130 OE1 81.9 85.9 175.8 85.5 101.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 58 OE1 REMARK 620 2 FEO A 201 O 109.5 REMARK 620 3 GLU A 61 OE1 87.8 83.3 REMARK 620 4 HIS A 80 NE2 71.7 169.1 86.0 REMARK 620 5 HIS A 126 NE2 96.6 94.2 175.5 96.5 REMARK 620 6 GLU A 130 OE2 161.9 88.5 91.6 90.1 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO B 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 FEO B 201 O 133.7 REMARK 620 3 HIS B 57 NE2 95.8 102.0 REMARK 620 4 GLU B 61 OE2 105.4 118.7 84.2 REMARK 620 5 GLU B 130 OE1 78.8 87.1 170.7 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO B 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 58 OE1 REMARK 620 2 FEO B 201 O 98.1 REMARK 620 3 GLU B 61 OE1 92.4 86.1 REMARK 620 4 HIS B 80 NE2 77.1 167.4 82.5 REMARK 620 5 HIS B 126 NE2 95.6 95.5 171.5 96.6 REMARK 620 6 GLU B 130 OE2 171.6 90.3 88.1 94.7 83.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V5X RELATED DB: PDB REMARK 900 RELATED ID: 3V5Y RELATED DB: PDB DBREF 3V5Z A 1 161 UNP Q9UKA1 FBXL5_HUMAN 1 161 DBREF 3V5Z B 1 161 UNP Q9UKA1 FBXL5_HUMAN 1 161 SEQRES 1 A 161 MET ALA PRO PHE PRO GLU GLU VAL ASP VAL PHE THR ALA SEQRES 2 A 161 PRO HIS TRP ARG MET LYS GLN LEU VAL GLY LEU TYR CYS SEQRES 3 A 161 ASP LYS LEU SER LYS THR ASN PHE SER ASN ASN ASN ASP SEQRES 4 A 161 PHE ARG ALA LEU LEU GLN SER LEU TYR ALA THR PHE LYS SEQRES 5 A 161 GLU PHE LYS MET HIS GLU GLN ILE GLU ASN GLU TYR ILE SEQRES 6 A 161 ILE GLY LEU LEU GLN GLN ARG SER GLN THR ILE TYR ASN SEQRES 7 A 161 VAL HIS SER ASP ASN LYS LEU SER GLU MET LEU SER LEU SEQRES 8 A 161 PHE GLU LYS GLY LEU LYS ASN VAL LYS ASN GLU TYR GLU SEQRES 9 A 161 GLN LEU ASN TYR ALA LYS GLN LEU LYS GLU ARG LEU GLU SEQRES 10 A 161 ALA PHE THR ARG ASP PHE LEU PRO HIS MET LYS GLU GLU SEQRES 11 A 161 GLU GLU VAL PHE GLN PRO MET LEU MET GLU TYR PHE THR SEQRES 12 A 161 TYR GLU GLU LEU LYS ASP ILE LYS LYS LYS VAL ILE ALA SEQRES 13 A 161 GLN HIS CYS SER GLN SEQRES 1 B 161 MET ALA PRO PHE PRO GLU GLU VAL ASP VAL PHE THR ALA SEQRES 2 B 161 PRO HIS TRP ARG MET LYS GLN LEU VAL GLY LEU TYR CYS SEQRES 3 B 161 ASP LYS LEU SER LYS THR ASN PHE SER ASN ASN ASN ASP SEQRES 4 B 161 PHE ARG ALA LEU LEU GLN SER LEU TYR ALA THR PHE LYS SEQRES 5 B 161 GLU PHE LYS MET HIS GLU GLN ILE GLU ASN GLU TYR ILE SEQRES 6 B 161 ILE GLY LEU LEU GLN GLN ARG SER GLN THR ILE TYR ASN SEQRES 7 B 161 VAL HIS SER ASP ASN LYS LEU SER GLU MET LEU SER LEU SEQRES 8 B 161 PHE GLU LYS GLY LEU LYS ASN VAL LYS ASN GLU TYR GLU SEQRES 9 B 161 GLN LEU ASN TYR ALA LYS GLN LEU LYS GLU ARG LEU GLU SEQRES 10 B 161 ALA PHE THR ARG ASP PHE LEU PRO HIS MET LYS GLU GLU SEQRES 11 B 161 GLU GLU VAL PHE GLN PRO MET LEU MET GLU TYR PHE THR SEQRES 12 B 161 TYR GLU GLU LEU LYS ASP ILE LYS LYS LYS VAL ILE ALA SEQRES 13 B 161 GLN HIS CYS SER GLN HET FEO A 201 3 HET FEO B 201 3 HETNAM FEO MU-OXO-DIIRON FORMUL 3 FEO 2(FE2 O) FORMUL 5 HOH *46(H2 O) HELIX 1 1 PRO A 5 ASP A 9 5 5 HELIX 2 2 PHE A 11 THR A 32 1 22 HELIX 3 3 ASN A 36 ILE A 65 1 30 HELIX 4 4 ILE A 65 GLN A 74 1 10 HELIX 5 5 LYS A 84 ASN A 98 1 15 HELIX 6 6 ASN A 101 VAL A 133 1 33 HELIX 7 7 VAL A 133 PHE A 142 1 10 HELIX 8 8 THR A 143 CYS A 159 1 17 HELIX 9 9 PRO B 5 ASP B 9 5 5 HELIX 10 10 PHE B 11 THR B 32 1 22 HELIX 11 11 ASN B 36 ILE B 65 1 30 HELIX 12 12 ILE B 65 GLN B 74 1 10 HELIX 13 13 LYS B 84 ASN B 98 1 15 HELIX 14 14 ASN B 101 VAL B 133 1 33 HELIX 15 15 VAL B 133 PHE B 142 1 10 HELIX 16 16 THR B 143 CYS B 159 1 17 LINK NE2 HIS A 15 FE2 FEO A 201 1555 1555 2.04 LINK NE2 HIS A 57 FE2 FEO A 201 1555 1555 2.25 LINK OE1 GLU A 58 FE1 FEO A 201 1555 1555 2.03 LINK OE2 GLU A 61 FE2 FEO A 201 1555 1555 2.12 LINK OE1 GLU A 61 FE1 FEO A 201 1555 1555 2.39 LINK OE1 GLU A 61 FE2 FEO A 201 1555 1555 2.76 LINK NE2 HIS A 80 FE1 FEO A 201 1555 1555 2.39 LINK NE2 HIS A 126 FE1 FEO A 201 1555 1555 2.31 LINK OE2 GLU A 130 FE1 FEO A 201 1555 1555 1.96 LINK OE1 GLU A 130 FE2 FEO A 201 1555 1555 2.22 LINK NE2 HIS B 15 FE2 FEO B 201 1555 1555 2.16 LINK NE2 HIS B 57 FE2 FEO B 201 1555 1555 2.25 LINK OE1 GLU B 58 FE1 FEO B 201 1555 1555 2.18 LINK OE2 GLU B 61 FE2 FEO B 201 1555 1555 2.23 LINK OE1 GLU B 61 FE1 FEO B 201 1555 1555 2.25 LINK NE2 HIS B 80 FE1 FEO B 201 1555 1555 2.31 LINK NE2 HIS B 126 FE1 FEO B 201 1555 1555 2.32 LINK OE2 GLU B 130 FE1 FEO B 201 1555 1555 2.01 LINK OE1 GLU B 130 FE2 FEO B 201 1555 1555 2.26 SITE 1 AC1 7 HIS A 15 HIS A 57 GLU A 58 GLU A 61 SITE 2 AC1 7 HIS A 80 HIS A 126 GLU A 130 SITE 1 AC2 7 HIS B 15 HIS B 57 GLU B 58 GLU B 61 SITE 2 AC2 7 HIS B 80 HIS B 126 GLU B 130 CRYST1 60.442 76.051 77.433 90.00 112.12 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016545 0.000000 0.006726 0.00000 SCALE2 0.000000 0.013149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013941 0.00000