HEADER SIGNALING PROTEIN 19-DEC-11 3V67 TITLE PERIPLASMIC DOMAIN OF VIBRIO PARAHAEMOLYTICUS CPXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN CPXA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SENSOR DOMAIN, RESIDUES 38-173; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: VP2859; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVFT1A - PET28A(+) DERIVED KEYWDS PAS FOLD, SIGNAL SENSING, SIGNALING PROTEIN, MEROHEDRAL TWINNING EXPDTA X-RAY DIFFRACTION AUTHOR E.KWON,D.Y.KIM,T.D.NGO,J.D.GROSS,K.K.KIM REVDAT 2 20-MAR-24 3V67 1 SEQADV REVDAT 1 26-SEP-12 3V67 0 JRNL AUTH E.KWON,D.Y.KIM,T.D.NGO,C.A.GROSS,J.D.GROSS,K.K.KIM JRNL TITL THE CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS CPXA JRNL REF PROTEIN SCI. V. 21 1334 2012 JRNL REFN ISSN 0961-8368 JRNL PMID 22760860 JRNL DOI 10.1002/PRO.2120 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2011_12_05_2329 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4310 - 3.6488 0.95 2802 136 0.1936 0.2389 REMARK 3 2 3.6488 - 2.8993 0.95 2794 137 0.2476 0.3009 REMARK 3 3 2.8993 - 2.5337 0.95 2775 142 0.2691 0.3180 REMARK 3 4 2.5337 - 2.3024 0.94 2787 144 0.2792 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 37.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34970 REMARK 3 B22 (A**2) : 1.34970 REMARK 3 B33 (A**2) : -2.69940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0640 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2244 REMARK 3 ANGLE : 0.911 3029 REMARK 3 CHIRALITY : 0.067 313 REMARK 3 PLANARITY : 0.003 401 REMARK 3 DIHEDRAL : 15.727 880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 41:71) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0215 59.7424 6.6331 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1746 REMARK 3 T33: 0.2275 T12: 0.0293 REMARK 3 T13: 0.0930 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.5595 L22: 1.8298 REMARK 3 L33: 2.1406 L12: -1.0677 REMARK 3 L13: -1.4450 L23: 0.0805 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.0056 S13: 0.0263 REMARK 3 S21: -0.4779 S22: -0.0239 S23: -0.8261 REMARK 3 S31: 0.0954 S32: 0.2345 S33: 0.0680 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 72:82) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8743 72.6845 1.7966 REMARK 3 T TENSOR REMARK 3 T11: 0.3667 T22: -0.1550 REMARK 3 T33: 0.3228 T12: -0.0409 REMARK 3 T13: -0.1998 T23: 0.1223 REMARK 3 L TENSOR REMARK 3 L11: 1.8267 L22: 5.7573 REMARK 3 L33: 4.5786 L12: -1.2123 REMARK 3 L13: -1.4102 L23: 2.6508 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: 0.0699 S13: 0.2330 REMARK 3 S21: -0.5747 S22: 0.0076 S23: -0.1130 REMARK 3 S31: -0.3826 S32: -0.0230 S33: -0.1868 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 83:96) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8213 61.4723 -3.6423 REMARK 3 T TENSOR REMARK 3 T11: 0.5338 T22: -0.0536 REMARK 3 T33: -0.1608 T12: 0.0572 REMARK 3 T13: 0.0522 T23: -0.2386 REMARK 3 L TENSOR REMARK 3 L11: 0.6038 L22: 0.4665 REMARK 3 L33: 3.7528 L12: -0.1672 REMARK 3 L13: -0.3038 L23: 1.3237 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: 0.2451 S13: -0.1369 REMARK 3 S21: -0.1822 S22: -0.1378 S23: -0.0971 REMARK 3 S31: 0.1357 S32: -0.0869 S33: -0.1860 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 97:109) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7022 64.2001 6.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.4126 T22: 0.2579 REMARK 3 T33: 0.2865 T12: 0.2565 REMARK 3 T13: -0.1353 T23: -0.1452 REMARK 3 L TENSOR REMARK 3 L11: 0.4842 L22: 2.2351 REMARK 3 L33: 4.3789 L12: 0.3434 REMARK 3 L13: -0.8604 L23: 1.7439 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.3204 S13: -0.0284 REMARK 3 S21: -0.8107 S22: -0.2260 S23: 0.7649 REMARK 3 S31: -0.6728 S32: -0.5978 S33: 0.1816 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 110:122) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3890 55.3251 4.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.1624 REMARK 3 T33: 0.5290 T12: -0.1037 REMARK 3 T13: -0.1616 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.2973 L22: 6.6386 REMARK 3 L33: 4.6879 L12: 0.6541 REMARK 3 L13: 0.5910 L23: -3.7958 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.0437 S13: 0.5644 REMARK 3 S21: -0.6413 S22: 0.1984 S23: 1.1932 REMARK 3 S31: 0.1980 S32: -0.8253 S33: -0.1390 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 123:129) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6893 52.1346 16.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.5175 T22: 0.2267 REMARK 3 T33: 0.1757 T12: -0.0429 REMARK 3 T13: 0.0303 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 5.6835 L22: 5.8690 REMARK 3 L33: 6.1770 L12: 0.0301 REMARK 3 L13: -3.0400 L23: 3.7802 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.7846 S13: -0.8294 REMARK 3 S21: 1.1889 S22: -0.0209 S23: 0.0284 REMARK 3 S31: 1.4586 S32: -0.0672 S33: 0.1117 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 130:141) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3649 49.3090 2.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.5842 T22: -0.0174 REMARK 3 T33: 0.0797 T12: 0.0696 REMARK 3 T13: -0.0556 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 4.9133 L22: 3.8703 REMARK 3 L33: 0.9304 L12: 0.6128 REMARK 3 L13: -0.2550 L23: 1.8327 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: 0.4303 S13: -0.4210 REMARK 3 S21: -0.8621 S22: -0.0752 S23: 0.4391 REMARK 3 S31: 0.3585 S32: -0.1029 S33: -0.1259 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 142:159) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9681 62.7151 9.5643 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1088 REMARK 3 T33: 0.0671 T12: 0.0351 REMARK 3 T13: 0.0343 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 6.3898 L22: 1.3055 REMARK 3 L33: 3.5493 L12: -1.0858 REMARK 3 L13: -0.0163 L23: -1.9182 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.3300 S13: -0.0386 REMARK 3 S21: -0.0555 S22: 0.0755 S23: -0.1632 REMARK 3 S31: 0.2699 S32: 0.0879 S33: -0.0472 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 160:172) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4768 31.7218 -8.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.5726 T22: 0.3598 REMARK 3 T33: 0.2588 T12: 0.1497 REMARK 3 T13: -0.1895 T23: -0.0919 REMARK 3 L TENSOR REMARK 3 L11: 0.8376 L22: 6.8739 REMARK 3 L33: 0.3578 L12: 0.3436 REMARK 3 L13: -0.2449 L23: 1.3054 REMARK 3 S TENSOR REMARK 3 S11: -0.2573 S12: 0.0813 S13: 0.0956 REMARK 3 S21: 0.2517 S22: -0.1065 S23: 0.1476 REMARK 3 S31: -0.9811 S32: -0.3180 S33: 0.2757 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 42:48) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3235 41.4492 3.0503 REMARK 3 T TENSOR REMARK 3 T11: 0.5987 T22: 0.1966 REMARK 3 T33: 0.5849 T12: 0.0255 REMARK 3 T13: -0.2880 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 7.0179 L22: 7.6449 REMARK 3 L33: 6.2956 L12: 5.9181 REMARK 3 L13: 5.9512 L23: 6.8409 REMARK 3 S TENSOR REMARK 3 S11: -1.3711 S12: 0.5087 S13: 1.2974 REMARK 3 S21: -0.0642 S22: 0.5895 S23: -1.1372 REMARK 3 S31: -1.6165 S32: 0.5485 S33: 0.8443 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 49:65) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9120 25.2276 0.6281 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.0057 REMARK 3 T33: 0.8598 T12: 0.1383 REMARK 3 T13: -0.3399 T23: -0.0917 REMARK 3 L TENSOR REMARK 3 L11: 1.9536 L22: 4.3536 REMARK 3 L33: 1.4164 L12: -0.7873 REMARK 3 L13: -0.3411 L23: 0.4974 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.1116 S13: -0.0172 REMARK 3 S21: -0.4924 S22: -0.1184 S23: 0.8823 REMARK 3 S31: -0.0816 S32: -0.1780 S33: -0.0365 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 66:71) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9724 8.3634 2.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.6691 T22: 0.1846 REMARK 3 T33: 0.5885 T12: -0.0188 REMARK 3 T13: -0.0401 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 6.1319 L22: 6.4789 REMARK 3 L33: 8.0785 L12: -4.4299 REMARK 3 L13: -0.5121 L23: -4.7627 REMARK 3 S TENSOR REMARK 3 S11: 0.1129 S12: 0.0791 S13: -1.0980 REMARK 3 S21: -0.6635 S22: 0.2382 S23: 1.5372 REMARK 3 S31: 0.7172 S32: -0.3028 S33: -0.3517 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 72:82) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3044 13.1400 -3.4061 REMARK 3 T TENSOR REMARK 3 T11: 0.8400 T22: 0.0509 REMARK 3 T33: 0.3964 T12: 0.1306 REMARK 3 T13: 0.2165 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 3.5583 L22: 7.2777 REMARK 3 L33: 4.3070 L12: -3.7461 REMARK 3 L13: 1.8627 L23: -3.3269 REMARK 3 S TENSOR REMARK 3 S11: 0.3055 S12: 0.1789 S13: -0.4110 REMARK 3 S21: -0.9633 S22: -0.0281 S23: 0.1047 REMARK 3 S31: 0.4742 S32: 0.0787 S33: -0.2290 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 83:96) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0601 24.3855 -8.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.7323 T22: 0.0877 REMARK 3 T33: -0.0414 T12: 0.3312 REMARK 3 T13: -0.1921 T23: 0.2465 REMARK 3 L TENSOR REMARK 3 L11: 0.0878 L22: 0.0528 REMARK 3 L33: 1.2558 L12: 0.0095 REMARK 3 L13: -0.0630 L23: -0.2749 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: 0.1670 S13: -0.0307 REMARK 3 S21: -0.2687 S22: -0.2358 S23: 0.0935 REMARK 3 S31: -0.0209 S32: 0.1222 S33: -0.1920 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 97:109) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0234 21.6700 1.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.2764 REMARK 3 T33: 0.6334 T12: 0.2962 REMARK 3 T13: 0.1662 T23: 0.3596 REMARK 3 L TENSOR REMARK 3 L11: 0.4841 L22: 1.3197 REMARK 3 L33: 2.2746 L12: -0.5545 REMARK 3 L13: 0.5823 L23: -1.0822 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.1907 S13: 0.1950 REMARK 3 S21: -0.4627 S22: -0.2907 S23: -0.7277 REMARK 3 S31: 0.1710 S32: 0.3667 S33: 0.4039 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 110:129) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8504 31.7299 4.0586 REMARK 3 T TENSOR REMARK 3 T11: 0.3766 T22: 0.2281 REMARK 3 T33: 0.5366 T12: 0.0033 REMARK 3 T13: 0.0100 T23: 0.1592 REMARK 3 L TENSOR REMARK 3 L11: 8.6897 L22: 6.1722 REMARK 3 L33: 6.8706 L12: 0.6129 REMARK 3 L13: -2.3112 L23: -0.7032 REMARK 3 S TENSOR REMARK 3 S11: -0.1546 S12: -0.3978 S13: 0.0172 REMARK 3 S21: 0.0212 S22: -0.2497 S23: -1.3707 REMARK 3 S31: -0.6468 S32: 0.7093 S33: 0.2266 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 130:149) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1328 30.3319 1.3661 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: -0.1008 REMARK 3 T33: 0.1153 T12: 0.0901 REMARK 3 T13: 0.1099 T23: 0.1533 REMARK 3 L TENSOR REMARK 3 L11: 3.4025 L22: 3.3864 REMARK 3 L33: 2.5309 L12: 0.3491 REMARK 3 L13: 0.4635 L23: -0.1526 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: 0.1439 S13: 0.4006 REMARK 3 S21: -0.6169 S22: -0.1237 S23: -0.6395 REMARK 3 S31: -0.2831 S32: 0.0584 S33: 0.0787 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 150:159) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3335 25.6597 2.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.3848 T22: 0.0854 REMARK 3 T33: 0.1214 T12: 0.0253 REMARK 3 T13: 0.0030 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 7.3785 L22: 3.1373 REMARK 3 L33: 4.3886 L12: 2.0647 REMARK 3 L13: -2.0995 L23: -1.8072 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.3603 S13: 0.2725 REMARK 3 S21: -0.8136 S22: -0.1277 S23: 0.0462 REMARK 3 S31: -0.2180 S32: 0.0539 S33: -0.0561 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 160:172) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1490 53.0927 -7.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.8217 T22: 0.8769 REMARK 3 T33: 0.2391 T12: 0.2445 REMARK 3 T13: 0.2414 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 0.3914 L22: 0.5379 REMARK 3 L33: 0.1681 L12: 0.0908 REMARK 3 L13: 0.1042 L23: 0.2605 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.3626 S13: -0.1871 REMARK 3 S21: -0.4893 S22: 0.0261 S23: -0.2849 REMARK 3 S31: 0.4083 S32: 0.4490 S33: 0.0873 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 43:105 OR RESSEQ REMARK 3 108:161 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 43:105 OR RESSEQ REMARK 3 108:161 ) REMARK 3 ATOM PAIRS NUMBER : 972 REMARK 3 RMSD : 0.018 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97943, 0.97970, 0.98751, REMARK 200 0.97176 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27600 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 18-24% PEG 3000, 0.2M REMARK 280 CA(OAC)2, 3%(V/V) 1,6-HEXANEDIOL, 2MM TRIS(2-CARBOXYETHYL) REMARK 280 PHOSPHINE, PH 7.0, EVAPORATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.29150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.89222 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.77133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 74.29150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.89222 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.77133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 74.29150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.89222 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.77133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.78444 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 21.54267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 85.78444 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.54267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 85.78444 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 21.54267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 HIS A 38 REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 HIS A 173 REMARK 465 GLY B 36 REMARK 465 SER B 37 REMARK 465 HIS B 38 REMARK 465 LEU B 39 REMARK 465 ASP B 40 REMARK 465 PRO B 41 REMARK 465 HIS B 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 209 O HOH B 234 2.17 REMARK 500 O HOH A 203 O HOH A 238 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 248 O HOH B 234 9554 2.10 REMARK 500 OD2 ASP A 125 ND2 ASN A 161 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 108 -27.28 -36.75 REMARK 500 ASN A 161 64.87 -102.44 REMARK 500 GLU A 162 105.47 17.02 REMARK 500 LEU A 168 65.99 63.08 REMARK 500 PHE A 171 20.06 -72.81 REMARK 500 LYS B 43 78.41 -105.53 REMARK 500 GLU B 162 72.45 -159.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 3V67 A 38 173 UNP Q87KW6 Q87KW6_VIBPA 38 173 DBREF 3V67 B 38 173 UNP Q87KW6 Q87KW6_VIBPA 38 173 SEQADV 3V67 GLY A 36 UNP Q87KW6 EXPRESSION TAG SEQADV 3V67 SER A 37 UNP Q87KW6 EXPRESSION TAG SEQADV 3V67 GLY B 36 UNP Q87KW6 EXPRESSION TAG SEQADV 3V67 SER B 37 UNP Q87KW6 EXPRESSION TAG SEQRES 1 A 138 GLY SER HIS LEU ASP PRO ARG LYS ALA ARG ASP ILE PRO SEQRES 2 A 138 ASP GLU HIS TYR GLN ARG ILE ILE GLU THR ARG ASP ALA SEQRES 3 A 138 ILE GLN ASN LYS TYR SER LYS GLU THR ASP LEU GLY ARG SEQRES 4 A 138 ILE LEU PHE ARG VAL GLU GLY ASN ARG ALA GLY LYS HIS SEQRES 5 A 138 ASP PRO ARG PRO ARG VAL PHE PHE SER ASP TYR ASN GLY SEQRES 6 A 138 ASN VAL LEU THR THR ASP LYS ARG SER ASN PHE GLN LEU SEQRES 7 A 138 ARG ALA MET GLN ASN PHE VAL THR SER ILE GLU ASP TYR SEQRES 8 A 138 ASN LYS PRO LYS GLN ARG LEU TYR GLY ARG TYR MET ILE SEQRES 9 A 138 ALA GLY PRO VAL PRO ILE VAL LEU ALA ASP SER GLU LEU SEQRES 10 A 138 LEU MET TYR VAL GLY PHE LYS TRP ASN GLU PRO PRO PRO SEQRES 11 A 138 LEU LEU LEU ARG LEU PHE ASP HIS SEQRES 1 B 138 GLY SER HIS LEU ASP PRO ARG LYS ALA ARG ASP ILE PRO SEQRES 2 B 138 ASP GLU HIS TYR GLN ARG ILE ILE GLU THR ARG ASP ALA SEQRES 3 B 138 ILE GLN ASN LYS TYR SER LYS GLU THR ASP LEU GLY ARG SEQRES 4 B 138 ILE LEU PHE ARG VAL GLU GLY ASN ARG ALA GLY LYS HIS SEQRES 5 B 138 ASP PRO ARG PRO ARG VAL PHE PHE SER ASP TYR ASN GLY SEQRES 6 B 138 ASN VAL LEU THR THR ASP LYS ARG SER ASN PHE GLN LEU SEQRES 7 B 138 ARG ALA MET GLN ASN PHE VAL THR SER ILE GLU ASP TYR SEQRES 8 B 138 ASN LYS PRO LYS GLN ARG LEU TYR GLY ARG TYR MET ILE SEQRES 9 B 138 ALA GLY PRO VAL PRO ILE VAL LEU ALA ASP SER GLU LEU SEQRES 10 B 138 LEU MET TYR VAL GLY PHE LYS TRP ASN GLU PRO PRO PRO SEQRES 11 B 138 LEU LEU LEU ARG LEU PHE ASP HIS FORMUL 3 HOH *100(H2 O) HELIX 1 1 PRO A 48 TYR A 66 1 19 HELIX 2 2 ASP A 71 ASN A 82 1 12 HELIX 3 3 SER A 109 ILE A 123 1 15 HELIX 4 4 PRO B 48 TYR B 66 1 19 HELIX 5 5 ASP B 71 ASN B 82 1 12 HELIX 6 6 SER B 109 ILE B 123 1 15 SHEET 1 A 6 ARG A 45 ASP A 46 0 SHEET 2 A 6 LYS A 130 TYR A 134 -1 O GLN A 131 N ARG A 45 SHEET 3 A 6 TYR A 137 LEU A 147 -1 O GLY A 141 N LYS A 130 SHEET 4 A 6 SER A 150 LYS A 159 -1 O MET A 154 N VAL A 143 SHEET 5 A 6 ARG A 92 SER A 96 -1 N ARG A 92 O GLY A 157 SHEET 6 A 6 VAL A 102 LEU A 103 -1 O LEU A 103 N PHE A 95 SHEET 1 B 6 ARG B 45 ASP B 46 0 SHEET 2 B 6 LYS B 130 TYR B 134 -1 O GLN B 131 N ARG B 45 SHEET 3 B 6 TYR B 137 LEU B 147 -1 O GLY B 141 N LYS B 130 SHEET 4 B 6 SER B 150 LYS B 159 -1 O MET B 154 N VAL B 143 SHEET 5 B 6 ARG B 92 SER B 96 -1 N ARG B 92 O GLY B 157 SHEET 6 B 6 VAL B 102 LEU B 103 -1 O LEU B 103 N PHE B 95 CISPEP 1 GLY A 141 PRO A 142 0 -1.96 CISPEP 2 LEU A 167 LEU A 168 0 12.94 CISPEP 3 GLY B 141 PRO B 142 0 -2.35 CISPEP 4 PRO B 164 PRO B 165 0 4.87 CRYST1 148.583 148.583 32.314 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006730 0.003886 0.000000 0.00000 SCALE2 0.000000 0.007771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030946 0.00000