HEADER TRANSFERASE 21-DEC-11 3V7L TITLE APO STRUCTURE OF RAT DNA POLYMERASE BETA K72E VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7, 4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS APO, REPAIR POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RANGARAJAN,J.JAEGER REVDAT 3 28-FEB-24 3V7L 1 REMARK SEQADV REVDAT 2 08-NOV-17 3V7L 1 REMARK REVDAT 1 16-JAN-13 3V7L 0 JRNL AUTH S.RANGARAJAN,C.L.GRIDLEY,S.FIRBANK,S.DALAL,J.B.SWEASY, JRNL AUTH 2 J.JAEGER JRNL TITL CRYSTALLOGRAPHIC STUDIES OF K72E MUTANT DNA POLYMERASE JRNL TITL 2 EXPLAIN LOSS OF LYASE FUNCTION AND REVEAL CHANGES IN THE JRNL TITL 3 OVERALL CONFORMATIONAL STATE OF THE POLYMERASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 10608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5380 - 4.2120 0.88 2672 152 0.2415 0.3041 REMARK 3 2 4.2120 - 3.3487 0.89 2663 153 0.2434 0.3316 REMARK 3 3 3.3487 - 2.9270 0.84 2498 142 0.2818 0.3777 REMARK 3 4 2.9270 - 2.6601 0.75 2206 122 0.3202 0.4316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.22 REMARK 3 B_SOL : 39.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 29.68650 REMARK 3 B22 (A**2) : 30.71470 REMARK 3 B33 (A**2) : 48.89210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.56850 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2608 REMARK 3 ANGLE : 1.596 3503 REMARK 3 CHIRALITY : 0.099 368 REMARK 3 PLANARITY : 0.006 463 REMARK 3 DIHEDRAL : 18.111 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL BENDER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 19.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44800 REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, GLYCEROL, CACODYLATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.69300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 102 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL A 103 CB CG1 CG2 REMARK 470 THR A 104 CB OG1 CG2 REMARK 470 ILE A 106 CB CG1 CG2 CD1 REMARK 470 PRO A 108 CB CG CD REMARK 470 SER A 109 CB OG REMARK 470 ALA A 110 CB REMARK 470 ALA A 111 CB REMARK 470 ARG A 112 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CB CG CD CE NZ REMARK 470 LEU A 114 CB CG CD1 CD2 REMARK 470 VAL A 115 CB CG1 CG2 REMARK 470 ASP A 116 CB CG OD1 OD2 REMARK 470 GLU A 117 CB CG CD OE1 OE2 REMARK 470 SER A 243 CB OG REMARK 470 GLU A 244 CB CG CD OE1 OE2 REMARK 470 ASN A 245 CB CG OD1 ND2 REMARK 470 ASP A 246 CB CG OD1 OD2 REMARK 470 GLU A 247 CB CG CD OE1 OE2 REMARK 470 ASN A 248 CB CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 12 C OD1 REMARK 480 ILE A 15 CG1 REMARK 480 VAL A 20 CB REMARK 480 GLU A 21 CD REMARK 480 LEU A 22 CB REMARK 480 PHE A 25 CB REMARK 480 LYS A 27 CE REMARK 480 ASN A 28 N REMARK 480 GLN A 31 C REMARK 480 HIS A 34 NE2 REMARK 480 LYS A 35 CG REMARK 480 ALA A 38 C REMARK 480 TYR A 49 CE2 CZ OH REMARK 480 HIS A 51 CE1 REMARK 480 ILE A 53 CG1 REMARK 480 LYS A 54 N C REMARK 480 LEU A 62 CG REMARK 480 GLY A 66 N REMARK 480 ALA A 70 N REMARK 480 GLU A 71 CA REMARK 480 ILE A 73 C REMARK 480 GLU A 75 CG OE2 REMARK 480 PHE A 76 N CE1 REMARK 480 ALA A 78 C REMARK 480 LYS A 81 CG REMARK 480 LEU A 82 C CG REMARK 480 ARG A 83 CZ REMARK 480 LYS A 84 N REMARK 480 LYS A 87 CD NZ REMARK 480 ILE A 88 CA CB REMARK 480 ARG A 89 O CD CZ REMARK 480 GLN A 90 CA REMARK 480 ASP A 92 C OD1 REMARK 480 THR A 93 CA REMARK 480 SER A 94 O REMARK 480 SER A 95 CA REMARK 480 PHE A 99 C CZ REMARK 480 LEU A 100 CA REMARK 480 THR A 104 N REMARK 480 ALA A 111 N REMARK 480 LEU A 114 C REMARK 480 GLU A 117 N REMARK 480 GLY A 118 CA REMARK 480 ILE A 119 CB REMARK 480 THR A 121 CA C REMARK 480 LEU A 122 C CD1 REMARK 480 GLU A 123 CB CD REMARK 480 ASP A 124 C CG REMARK 480 LEU A 125 C CG REMARK 480 ARG A 126 C CD REMARK 480 ASN A 128 N CB REMARK 480 GLU A 129 CG REMARK 480 LYS A 131 C CB REMARK 480 ASN A 133 CA REMARK 480 GLN A 136 CB REMARK 480 ARG A 137 CZ REMARK 480 LEU A 140 CG REMARK 480 TYR A 142 CG REMARK 480 PHE A 143 CA CD2 REMARK 480 ASP A 145 OD2 REMARK 480 GLU A 147 CD REMARK 480 GLU A 153 CB REMARK 480 ASN A 164 OD1 REMARK 480 GLU A 165 CD REMARK 480 GLU A 172 CD REMARK 480 PHE A 181 CZ REMARK 480 ASP A 190 OD1 REMARK 480 LEU A 210 CA REMARK 480 GLU A 216 CD REMARK 480 ARG A 222 CZ REMARK 480 LYS A 230 O REMARK 480 THR A 233 CA REMARK 480 LYS A 234 NZ REMARK 480 GLU A 244 N REMARK 480 GLU A 247 C O REMARK 480 ASP A 276 CG REMARK 480 ARG A 283 CG NH1 REMARK 480 LEU A 287 C CG REMARK 480 GLU A 288 CG REMARK 480 LYS A 289 CG REMARK 480 VAL A 303 C REMARK 480 GLY A 305 CA REMARK 480 GLU A 316 O REMARK 480 TRP A 325 C REMARK 480 ARG A 326 NH2 REMARK 480 ARG A 333 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 231 O HOH A 369 2.02 REMARK 500 N LYS A 141 O HOH A 377 2.06 REMARK 500 OH TYR A 327 O HOH A 342 2.09 REMARK 500 N LYS A 60 O HOH A 368 2.09 REMARK 500 OH TYR A 296 O HOH A 402 2.10 REMARK 500 CL CL A 339 O HOH A 384 2.12 REMARK 500 O THR A 273 O HOH A 357 2.12 REMARK 500 OH TYR A 266 O HOH A 403 2.16 REMARK 500 N THR A 79 O HOH A 365 2.16 REMARK 500 OE1 GLU A 26 NZ LYS A 35 2.17 REMARK 500 OE1 GLU A 232 O HOH A 375 2.17 REMARK 500 OG SER A 96 O HOH A 381 2.18 REMARK 500 O ASP A 92 O HOH A 381 2.19 REMARK 500 N GLN A 207 O HOH A 343 2.19 REMARK 500 O HOH A 358 O HOH A 359 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 -74.34 -105.02 REMARK 500 ASN A 28 -148.32 -86.61 REMARK 500 VAL A 29 46.57 -19.73 REMARK 500 SER A 30 -54.11 -172.98 REMARK 500 HIS A 34 -29.32 73.23 REMARK 500 PRO A 50 33.25 -88.78 REMARK 500 PRO A 63 12.34 -69.45 REMARK 500 THR A 67 -84.06 -60.34 REMARK 500 ALA A 78 -77.90 -169.68 REMARK 500 THR A 79 -70.89 -59.06 REMARK 500 LEU A 85 -81.96 -101.25 REMARK 500 SER A 96 -27.22 -161.20 REMARK 500 ARG A 102 96.08 -68.22 REMARK 500 VAL A 103 46.76 106.22 REMARK 500 THR A 104 -60.90 -148.45 REMARK 500 ILE A 106 -124.68 -132.20 REMARK 500 ARG A 112 101.46 105.18 REMARK 500 LYS A 113 -43.32 105.27 REMARK 500 ASP A 116 -9.86 -59.53 REMARK 500 THR A 121 -70.31 -52.94 REMARK 500 LEU A 122 -93.45 -106.88 REMARK 500 ASP A 124 7.20 -176.61 REMARK 500 GLU A 129 66.80 -110.22 REMARK 500 ASP A 130 57.78 -106.54 REMARK 500 LEU A 132 34.51 31.92 REMARK 500 HIS A 134 -150.77 -169.54 REMARK 500 HIS A 135 75.99 -166.01 REMARK 500 ARG A 137 26.14 -140.87 REMARK 500 ILE A 138 29.07 -159.91 REMARK 500 LEU A 140 80.27 -44.25 REMARK 500 LYS A 141 -55.65 176.38 REMARK 500 ASP A 170 111.33 -177.35 REMARK 500 PRO A 171 1.24 -64.47 REMARK 500 CYS A 178 -141.76 -122.58 REMARK 500 ASP A 190 -178.13 170.38 REMARK 500 LYS A 209 -11.72 -47.78 REMARK 500 ASN A 245 54.57 139.78 REMARK 500 ASP A 246 -135.67 -103.23 REMARK 500 GLU A 247 -175.21 -65.12 REMARK 500 ARG A 253 -166.80 -123.93 REMARK 500 THR A 273 -111.56 -103.75 REMARK 500 SER A 275 146.86 132.42 REMARK 500 LEU A 301 -93.21 -100.47 REMARK 500 VAL A 303 -81.44 21.90 REMARK 500 VAL A 306 95.01 -169.16 REMARK 500 ARG A 333 55.29 -98.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 249 TYR A 250 147.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V7K RELATED DB: PDB REMARK 900 RELATED ID: 3V7L RELATED DB: PDB DBREF 3V7L A 4 335 UNP P06766 DPOLB_RAT 4 335 SEQADV 3V7L MET A -4 UNP P06766 EXPRESSION TAG SEQADV 3V7L GLY A -3 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A -2 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A -1 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A 0 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A 1 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A 2 UNP P06766 EXPRESSION TAG SEQADV 3V7L HIS A 3 UNP P06766 EXPRESSION TAG SEQADV 3V7L GLU A 72 UNP P06766 LYS 72 ENGINEERED MUTATION SEQRES 1 A 340 MET GLY HIS HIS HIS HIS HIS HIS ARG LYS ALA PRO GLN SEQRES 2 A 340 GLU THR LEU ASN GLY GLY ILE THR ASP MET LEU VAL GLU SEQRES 3 A 340 LEU ALA ASN PHE GLU LYS ASN VAL SER GLN ALA ILE HIS SEQRES 4 A 340 LYS TYR ASN ALA TYR ARG LYS ALA ALA SER VAL ILE ALA SEQRES 5 A 340 LYS TYR PRO HIS LYS ILE LYS SER GLY ALA GLU ALA LYS SEQRES 6 A 340 LYS LEU PRO GLY VAL GLY THR LYS ILE ALA GLU GLU ILE SEQRES 7 A 340 ASP GLU PHE LEU ALA THR GLY LYS LEU ARG LYS LEU GLU SEQRES 8 A 340 LYS ILE ARG GLN ASP ASP THR SER SER SER ILE ASN PHE SEQRES 9 A 340 LEU THR ARG VAL THR GLY ILE GLY PRO SER ALA ALA ARG SEQRES 10 A 340 LYS LEU VAL ASP GLU GLY ILE LYS THR LEU GLU ASP LEU SEQRES 11 A 340 ARG LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE SEQRES 12 A 340 GLY LEU LYS TYR PHE GLU ASP PHE GLU LYS ARG ILE PRO SEQRES 13 A 340 ARG GLU GLU MET LEU GLN MET GLN ASP ILE VAL LEU ASN SEQRES 14 A 340 GLU VAL LYS LYS LEU ASP PRO GLU TYR ILE ALA THR VAL SEQRES 15 A 340 CYS GLY SER PHE ARG ARG GLY ALA GLU SER SER GLY ASP SEQRES 16 A 340 MET ASP VAL LEU LEU THR HIS PRO ASN PHE THR SER GLU SEQRES 17 A 340 SER SER LYS GLN PRO LYS LEU LEU HIS ARG VAL VAL GLU SEQRES 18 A 340 GLN LEU GLN LYS VAL ARG PHE ILE THR ASP THR LEU SER SEQRES 19 A 340 LYS GLY GLU THR LYS PHE MET GLY VAL CYS GLN LEU PRO SEQRES 20 A 340 SER GLU ASN ASP GLU ASN GLU TYR PRO HIS ARG ARG ILE SEQRES 21 A 340 ASP ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY SEQRES 22 A 340 VAL LEU TYR PHE THR GLY SER ASP ILE PHE ASN LYS ASN SEQRES 23 A 340 MET ARG ALA HIS ALA LEU GLU LYS GLY PHE THR ILE ASN SEQRES 24 A 340 GLU TYR THR ILE ARG PRO LEU GLY VAL THR GLY VAL ALA SEQRES 25 A 340 GLY GLU PRO LEU PRO VAL ASP SER GLU GLN ASP ILE PHE SEQRES 26 A 340 ASP TYR ILE GLN TRP ARG TYR ARG GLU PRO LYS ASP ARG SEQRES 27 A 340 SER GLU HET NA A 336 1 HET NA A 337 1 HET CL A 338 1 HET CL A 339 1 HET SO4 A 340 5 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 NA 2(NA 1+) FORMUL 4 CL 2(CL 1-) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *80(H2 O) HELIX 1 1 ILE A 15 ASN A 28 1 14 HELIX 2 2 HIS A 34 TYR A 49 1 16 HELIX 3 3 GLY A 66 LEU A 77 1 12 HELIX 4 4 LEU A 82 GLN A 90 1 9 HELIX 5 5 SER A 96 THR A 101 1 6 HELIX 6 6 LEU A 114 GLY A 118 5 5 HELIX 7 7 ARG A 152 ASP A 170 1 19 HELIX 8 8 CYS A 178 GLY A 184 1 7 HELIX 9 9 PRO A 208 VAL A 221 1 14 HELIX 10 10 PRO A 261 GLN A 264 5 4 HELIX 11 11 TYR A 265 THR A 273 1 9 HELIX 12 12 SER A 275 GLY A 290 1 16 HELIX 13 13 SER A 315 ILE A 323 1 9 HELIX 14 14 GLU A 329 ARG A 333 5 5 SHEET 1 A 2 ILE A 150 PRO A 151 0 SHEET 2 A 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 B 5 ILE A 174 VAL A 177 0 SHEET 2 B 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 B 5 ILE A 255 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 B 5 LYS A 234 CYS A 239 -1 N GLY A 237 O ILE A 255 SHEET 5 B 5 ILE A 224 SER A 229 -1 N LEU A 228 O MET A 236 SHEET 1 C 2 PHE A 291 ILE A 293 0 SHEET 2 C 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK NA NA A 337 O1 SO4 A 340 1555 1555 3.12 CISPEP 1 HIS A 135 GLN A 136 0 -0.18 SITE 1 AC1 2 THR A 101 ILE A 106 SITE 1 AC2 2 SER A 180 SO4 A 340 SITE 1 AC3 2 CYS A 178 ASP A 192 SITE 1 AC4 2 HIS A 135 HOH A 384 SITE 1 AC5 4 ARG A 149 SER A 180 GLY A 189 NA A 337 CRYST1 37.425 71.386 82.905 90.00 90.52 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026720 0.000000 0.000243 0.00000 SCALE2 0.000000 0.014008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012062 0.00000