HEADER HYDROLASE 21-DEC-11 3V7P TITLE CRYSTAL STRUCTURE OF AMIDOHYDROLASE NIS_0429 (TARGET EFI-500396) FROM TITLE 2 NITRATIRUPTOR SP. SB155-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE CHLOROHYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITRATIRUPTOR SP. SB155-2; SOURCE 3 ORGANISM_TAXID: 387092; SOURCE 4 STRAIN: SB155-2; SOURCE 5 GENE: NIS_0429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HYDROLASE, AMIDOHYDROLASE, IRON BINDING SITE, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,F.M.RAUSHEL,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 24-JAN-18 3V7P 1 AUTHOR REVDAT 2 07-MAR-12 3V7P 1 AUTHOR JRNL REVDAT 1 11-JAN-12 3V7P 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AMIDOHYDROLASE NIS_0429 (TARGET JRNL TITL 2 EFI-500319) FROM NITRATIRUPTOR SP. SB155-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 93105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3438 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4664 ; 1.389 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;31.914 ;24.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;12.597 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2586 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 4.492 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3365 ; 6.497 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 9.124 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ;13.491 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3438 ; 3.097 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 6.0, 1M POTASSIUM SODIUM REMARK 280 TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.75750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.75750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.87177 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.03090 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 SER A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 TRP A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 PRO A 423 REMARK 465 GLN A 424 REMARK 465 PHE A 425 REMARK 465 GLU A 426 REMARK 465 LYS A 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 87 CZ NH1 NH2 REMARK 470 ARG A 404 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 410 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -101.19 -126.81 REMARK 500 LYS A 70 -61.13 -123.77 REMARK 500 HIS A 257 -77.01 85.82 REMARK 500 ASP A 306 -175.47 65.94 REMARK 500 SER A 310 33.88 -147.95 REMARK 500 HIS A 327 62.95 -114.62 REMARK 500 THR A 344 -82.85 -115.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 429 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 608 O REMARK 620 2 HIS A 61 NE2 119.5 REMARK 620 3 HIS A 63 NE2 125.7 107.4 REMARK 620 4 HIS A 206 NE2 94.9 95.0 107.2 REMARK 620 5 ASP A 306 OD1 73.2 82.9 87.9 164.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 431 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 134 O REMARK 620 2 SER A 132 O 80.6 REMARK 620 3 CYS A 129 O 126.4 97.2 REMARK 620 4 HOH A 481 O 139.8 99.2 93.7 REMARK 620 5 ARG A 171 O 73.9 142.4 120.1 83.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 435 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500396 RELATED DB: TARGETDB DBREF 3V7P A 1 405 UNP A6Q234 A6Q234_NITSB 1 405 SEQADV 3V7P ALA A 406 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P GLU A 407 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P ASN A 408 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P LEU A 409 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P TYR A 410 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P PHE A 411 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P GLN A 412 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P SER A 413 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 414 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 415 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 416 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 417 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 418 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 419 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P TRP A 420 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P SER A 421 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P HIS A 422 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P PRO A 423 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P GLN A 424 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P PHE A 425 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P GLU A 426 UNP A6Q234 EXPRESSION TAG SEQADV 3V7P LYS A 427 UNP A6Q234 EXPRESSION TAG SEQRES 1 A 427 MET ARG ILE ILE LYS PRO PHE ALA ILE LEU THR PRO GLN SEQRES 2 A 427 THR ILE ILE GLN ASP LYS ALA VAL ALA PHE ASP LYS LYS SEQRES 3 A 427 ILE GLU ALA ILE ASP THR VAL GLU ASN LEU ILE LYS LYS SEQRES 4 A 427 TYR PRO ASN ALA ALA VAL GLU HIS ASP GLU ASN SER LEU SEQRES 5 A 427 LEU LEU PRO GLY PHE ALA ASN PRO HIS LEU HIS LEU GLU SEQRES 6 A 427 PHE SER ALA ASN LYS ALA THR LEU GLN TYR GLY ASP PHE SEQRES 7 A 427 ILE PRO TRP LEU TYR SER VAL ILE ARG HIS ARG GLU ASP SEQRES 8 A 427 LEU LEU PRO LEU CYS ASP GLY ALA CYS LEU GLU GLN THR SEQRES 9 A 427 LEU SER SER ILE ILE GLN THR GLY THR THR ALA ILE GLY SEQRES 10 A 427 ALA ILE SER SER TYR GLY GLU ASP LEU GLN ALA CYS ILE SEQRES 11 A 427 ASP SER ALA LEU LYS VAL VAL TYR PHE ASN GLU VAL ILE SEQRES 12 A 427 GLY SER ASN ALA ALA THR ALA ASP VAL MET TYR ALA SER SEQRES 13 A 427 PHE LEU GLU ARG PHE HIS GLN SER LYS LYS HIS GLU ASN SEQRES 14 A 427 GLU ARG PHE LYS ALA ALA VAL ALA ILE HIS SER PRO TYR SEQRES 15 A 427 SER VAL HIS TYR ILE LEU ALA LYS ARG ALA LEU ASP ILE SEQRES 16 A 427 ALA LYS LYS TYR GLY SER LEU VAL SER VAL HIS PHE MET SEQRES 17 A 427 GLU SER ARG ALA GLU ARG GLU TRP LEU ASP LYS GLY SER SEQRES 18 A 427 GLY GLU PHE ALA LYS PHE PHE LYS GLU PHE LEU ASN GLN SEQRES 19 A 427 THR ARG PRO VAL ASN ASP THR LYS SER PHE LEU GLU LEU SEQRES 20 A 427 PHE LYS GLU LEU HIS THR LEU PHE VAL HIS MET VAL TRP SEQRES 21 A 427 ALA ASN GLU GLU GLU ILE GLN THR ILE ALA SER TYR ASN SEQRES 22 A 427 ALA HIS ILE ILE HIS CYS PRO ILE SER ASN ARG LEU LEU SEQRES 23 A 427 GLY ASN GLY VAL LEU ASP LEU GLU LYS ILE LYS SER ILE SEQRES 24 A 427 PRO TYR ALA ILE ALA THR ASP GLY LEU SER SER ASN TYR SEQRES 25 A 427 SER LEU ASN MET TYR GLU GLU LEU LYS ALA ALA LEU PHE SEQRES 26 A 427 VAL HIS PRO ASN LYS GLU ALA THR THR PHE ALA LYS GLU SEQRES 27 A 427 LEU ILE ILE ARG ALA THR LYS ALA GLY TYR ASP ALA LEU SEQRES 28 A 427 GLY PHE GLU GLY GLY GLU ILE ALA VAL GLY LYS ASP ALA SEQRES 29 A 427 ASP MET GLN LEU ILE ASP LEU PRO GLU GLY LEU THR ASN SEQRES 30 A 427 VAL GLU ASP LEU TYR LEU HIS VAL ILE LEU HIS THR THR SEQRES 31 A 427 LYS PRO LYS LYS VAL TYR ILE GLN GLY GLU GLU HIS VAL SEQRES 32 A 427 ARG GLU ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS SEQRES 33 A 427 HIS HIS HIS TRP SER HIS PRO GLN PHE GLU LYS HET GOL A 428 6 HET FE A 429 1 HET BEZ A 430 9 HET K A 431 1 HET TLA A 432 10 HET TLA A 433 10 HET BCT A 434 4 HET BCT A 435 4 HET UNL A 436 5 HET UNL A 437 3 HETNAM GOL GLYCEROL HETNAM FE FE (III) ION HETNAM BEZ BENZOIC ACID HETNAM K POTASSIUM ION HETNAM TLA L(+)-TARTARIC ACID HETNAM BCT BICARBONATE ION HETNAM UNL UNKNOWN LIGAND HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 FE FE 3+ FORMUL 4 BEZ C7 H6 O2 FORMUL 5 K K 1+ FORMUL 6 TLA 2(C4 H6 O6) FORMUL 8 BCT 2(C H O3 1-) FORMUL 12 HOH *226(H2 O) HELIX 1 1 THR A 32 TYR A 40 1 9 HELIX 2 2 HIS A 63 SER A 67 5 5 HELIX 3 3 ASP A 77 CYS A 96 1 20 HELIX 4 4 ASP A 97 THR A 111 1 15 HELIX 5 5 ASP A 125 SER A 132 1 8 HELIX 6 6 ASN A 146 ALA A 148 5 3 HELIX 7 7 THR A 149 LYS A 166 1 18 HELIX 8 8 HIS A 185 GLY A 200 1 16 HELIX 9 9 SER A 210 GLY A 220 1 11 HELIX 10 10 GLY A 222 LEU A 232 1 11 HELIX 11 11 ASP A 240 LEU A 247 1 8 HELIX 12 12 ASN A 262 TYR A 272 1 11 HELIX 13 13 CYS A 279 LEU A 286 1 8 HELIX 14 14 ASN A 315 HIS A 327 1 13 HELIX 15 15 GLU A 331 THR A 344 1 14 HELIX 16 16 THR A 344 GLY A 352 1 9 HELIX 17 17 ASN A 377 GLU A 379 5 3 HELIX 18 18 ASP A 380 THR A 389 1 10 SHEET 1 A 4 ILE A 15 GLN A 17 0 SHEET 2 A 4 ARG A 2 LEU A 10 -1 N ILE A 9 O ILE A 16 SHEET 3 A 4 ALA A 20 PHE A 23 -1 O PHE A 23 N ARG A 2 SHEET 4 A 4 ILE A 27 ASP A 31 -1 O ASP A 31 N ALA A 20 SHEET 1 B 6 ILE A 15 GLN A 17 0 SHEET 2 B 6 ARG A 2 LEU A 10 -1 N ILE A 9 O ILE A 16 SHEET 3 B 6 ALA A 44 PRO A 55 1 O ASP A 48 N LYS A 5 SHEET 4 B 6 MET A 366 ASP A 370 -1 O GLN A 367 N LEU A 54 SHEET 5 B 6 LYS A 394 ILE A 397 -1 O TYR A 396 N MET A 366 SHEET 6 B 6 GLU A 400 VAL A 403 -1 O HIS A 402 N VAL A 395 SHEET 1 C 8 PHE A 57 LEU A 62 0 SHEET 2 C 8 THR A 113 SER A 120 1 O ILE A 119 N LEU A 62 SHEET 3 C 8 LYS A 135 VAL A 142 1 O PHE A 139 N SER A 120 SHEET 4 C 8 PHE A 172 ILE A 178 1 O LYS A 173 N TYR A 138 SHEET 5 C 8 VAL A 203 PHE A 207 1 O SER A 204 N ILE A 178 SHEET 6 C 8 HIS A 252 HIS A 257 1 O VAL A 256 N VAL A 205 SHEET 7 C 8 ASN A 273 HIS A 278 1 O HIS A 275 N PHE A 255 SHEET 8 C 8 TYR A 301 ILE A 303 1 O ALA A 302 N HIS A 278 SSBOND 1 CYS A 96 CYS A 100 1555 1555 2.06 LINK FE FE A 429 O HOH A 608 1555 1555 1.94 LINK NE2 HIS A 61 FE FE A 429 1555 1555 2.02 LINK NE2 HIS A 63 FE FE A 429 1555 1555 2.06 LINK NE2 HIS A 206 FE FE A 429 1555 1555 2.18 LINK OD1 ASP A 306 FE FE A 429 1555 1555 2.60 LINK O LEU A 134 K K A 431 1555 1555 2.66 LINK O SER A 132 K K A 431 1555 1555 2.67 LINK O CYS A 129 K K A 431 1555 1555 2.73 LINK K K A 431 O HOH A 481 1555 1555 2.78 LINK O ARG A 171 K K A 431 1555 1555 2.90 CISPEP 1 THR A 11 PRO A 12 0 12.16 SITE 1 AC1 11 ASN A 42 ASP A 77 PHE A 78 SER A 210 SITE 2 AC1 11 ARG A 211 ALA A 212 GLU A 223 TRP A 260 SITE 3 AC1 11 LEU A 286 GLY A 287 ASN A 288 SITE 1 AC2 5 HIS A 61 HIS A 63 HIS A 206 ASP A 306 SITE 2 AC2 5 HOH A 608 SITE 1 AC3 5 ILE A 143 SER A 145 SER A 183 LEU A 232 SITE 2 AC3 5 HOH A 558 SITE 1 AC4 5 CYS A 129 SER A 132 LEU A 134 ARG A 171 SITE 2 AC4 5 HOH A 481 SITE 1 AC5 6 ASP A 48 GLU A 49 ASN A 50 SER A 51 SITE 2 AC5 6 LYS A 393 HOH A 554 SITE 1 AC6 6 TYR A 154 LEU A 158 HIS A 162 ILE A 195 SITE 2 AC6 6 LYS A 198 TYR A 199 SITE 1 AC7 6 ASN A 169 GLN A 234 THR A 235 ARG A 236 SITE 2 AC7 6 GLN A 412 HOH A 627 SITE 1 AC8 9 ILE A 37 LEU A 291 ASP A 292 LEU A 293 SITE 2 AC8 9 HIS A 327 LYS A 330 HOH A 447 HOH A 600 SITE 3 AC8 9 HOH A 628 CRYST1 91.515 75.169 75.646 90.00 120.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010927 0.000000 0.006493 0.00000 SCALE2 0.000000 0.013303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015377 0.00000