HEADER TRANSFERASE 23-DEC-11 3V8Q TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 H223E MUTANT FROM LISTERIA TITLE 2 MONOCYTOGENES IN COMPLEX WITH 5'-AMINO-5'-DEOXYADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLY(P)/ATP NAD KINASE 1; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: PPNK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGAND-SCREENING BY CRYSTALLOGRAPHY, TWO-DOMAIN KINASE, INORGANIC KEYWDS 2 POLYPHOSPHATE/ATP-NAD KINASE 1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU,L.DUGU, AUTHOR 2 O.DUSSURGET,S.POCHET,G.LABESSE REVDAT 6 28-FEB-24 3V8Q 1 REMARK REVDAT 5 24-JUN-20 3V8Q 1 REMARK SEQADV REVDAT 4 08-NOV-17 3V8Q 1 REMARK REVDAT 3 27-JUN-12 3V8Q 1 JRNL REVDAT 2 06-JUN-12 3V8Q 1 JRNL REVDAT 1 14-MAR-12 3V8Q 0 JRNL AUTH M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU, JRNL AUTH 2 L.DUGUE,O.DUSSURGET,S.POCHET,G.LABESSE JRNL TITL SCREENING AND IN SITU SYNTHESIS USING CRYSTALS OF A NAD JRNL TITL 2 KINASE LEAD TO A POTENT ANTISTAPHYLOCOCCAL COMPOUND. JRNL REF STRUCTURE V. 20 1107 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22608967 JRNL DOI 10.1016/J.STR.2012.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.890 REMARK 3 FREE R VALUE TEST SET COUNT : 341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3410 - 2.9859 1.00 5821 170 0.1796 0.2184 REMARK 3 2 2.9859 - 2.3700 1.00 5638 171 0.2743 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 73.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.57000 REMARK 3 B22 (A**2) : 14.13340 REMARK 3 B33 (A**2) : -9.56350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2164 REMARK 3 ANGLE : 0.574 2925 REMARK 3 CHIRALITY : 0.040 315 REMARK 3 PLANARITY : 0.002 372 REMARK 3 DIHEDRAL : 14.217 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:100) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3788 24.2088 22.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.3863 REMARK 3 T33: 0.1949 T12: 0.0622 REMARK 3 T13: 0.0543 T23: -0.1050 REMARK 3 L TENSOR REMARK 3 L11: 1.1785 L22: 0.5007 REMARK 3 L33: 0.4990 L12: -0.3985 REMARK 3 L13: -0.7037 L23: 0.3912 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.4993 S13: 0.0363 REMARK 3 S21: -0.0094 S22: 0.1075 S23: -0.0138 REMARK 3 S31: -0.0839 S32: 0.1491 S33: -0.0529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 101:264) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2410 13.5607 -1.8845 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0995 REMARK 3 T33: 0.0890 T12: 0.0283 REMARK 3 T13: 0.0039 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.4345 L22: 0.8855 REMARK 3 L33: 1.6797 L12: -0.2560 REMARK 3 L13: 0.0556 L23: 0.4552 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.0294 S13: 0.0920 REMARK 3 S21: -0.0136 S22: -0.1188 S23: 0.0411 REMARK 3 S31: 0.0061 S32: -0.2131 S33: 0.0751 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 401:506 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4759 17.6364 6.2434 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0463 REMARK 3 T33: 0.1766 T12: -0.0025 REMARK 3 T13: -0.0036 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2428 L22: 0.4516 REMARK 3 L33: 0.2504 L12: -0.3387 REMARK 3 L13: 0.1004 L23: -0.1475 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: 0.0264 S13: -0.0018 REMARK 3 S21: 0.0141 S22: -0.0998 S23: -0.1056 REMARK 3 S31: 0.0335 S32: -0.0508 S33: -0.0455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 303) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9099 24.5889 15.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.7744 REMARK 3 T33: 0.6888 T12: 0.0378 REMARK 3 T13: 0.0166 T23: -0.3572 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 5.9726 REMARK 3 L33: 7.7838 L12: -5.9613 REMARK 3 L13: -9.8570 L23: 5.4818 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.1758 S13: 0.0837 REMARK 3 S21: -0.0144 S22: 0.0722 S23: 0.0640 REMARK 3 S31: -0.0581 S32: 0.0288 S33: -0.0227 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 301) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8493 7.6411 8.6862 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.4127 REMARK 3 T33: 0.2073 T12: 0.1601 REMARK 3 T13: 0.1031 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 3.8436 L22: 3.8535 REMARK 3 L33: 4.5008 L12: -3.7472 REMARK 3 L13: -3.7857 L23: 4.0839 REMARK 3 S TENSOR REMARK 3 S11: -0.3794 S12: -0.2735 S13: -0.1959 REMARK 3 S21: -0.0570 S22: -0.1865 S23: 0.1652 REMARK 3 S31: 0.2931 S32: -0.1064 S33: 0.4987 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 302) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8294 12.1782 12.4239 REMARK 3 T TENSOR REMARK 3 T11: 0.8009 T22: 0.7727 REMARK 3 T33: 0.1817 T12: -0.3633 REMARK 3 T13: 0.1259 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 6.4192 REMARK 3 L13: 0.1528 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 4.9820 S12: 0.9831 S13: 1.8845 REMARK 3 S21: 3.0603 S22: -4.5940 S23: 0.5898 REMARK 3 S31: -0.2334 S32: 5.1789 S33: -0.3724 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : ASYMMETRIC LAUE 001 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM SODIUM BROMIDE, 220 MM POTASSIUM REMARK 280 CITRATE, PH 4.8-5.1, GLYCEROL 6%, 15-16% W/V POLYETHYLENE GLYCOL REMARK 280 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.58450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.29400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.58450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.29400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.58450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.29400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.58450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.16900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 63.16900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 ASP A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -71.30 -101.81 REMARK 500 ASP A 141 -7.79 83.04 REMARK 500 ALA A 162 -124.26 -100.89 REMARK 500 VAL A 191 -61.77 -93.30 REMARK 500 HIS A 204 -1.61 76.67 REMARK 500 ASN A 213 -77.84 -117.63 REMARK 500 ASP A 222 -125.72 57.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 463 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 496 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5N5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I2C RELATED DB: PDB REMARK 900 RELATED ID: 3V7V RELATED DB: PDB REMARK 900 RELATED ID: 3V7W RELATED DB: PDB REMARK 900 RELATED ID: 3V7Y RELATED DB: PDB REMARK 900 RELATED ID: 3V80 RELATED DB: PDB REMARK 900 RELATED ID: 3V8M RELATED DB: PDB REMARK 900 RELATED ID: 3V8N RELATED DB: PDB REMARK 900 RELATED ID: 3V8P RELATED DB: PDB REMARK 900 RELATED ID: 3V8R RELATED DB: PDB DBREF 3V8Q A 1 264 UNP Q8Y8D7 PPNK1_LISMO 1 264 SEQADV 3V8Q GLU A 223 UNP Q8Y8D7 HIS 223 ENGINEERED MUTATION SEQADV 3V8Q LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8Q HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP GLU LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET 5N5 A 301 19 HET GOL A 302 6 HET CIT A 303 13 HETNAM 5N5 5'-AMINO-5'-DEOXYADENOSINE HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 5N5 C10 H14 N6 O3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *106(H2 O) HELIX 1 1 ASP A 10 GLU A 26 1 17 HELIX 2 2 GLY A 44 TYR A 55 1 12 HELIX 3 3 ARG A 58 ILE A 62 5 5 HELIX 4 4 ARG A 79 ALA A 81 5 3 HELIX 5 5 GLU A 82 LEU A 90 1 9 HELIX 6 6 PRO A 157 THR A 161 5 5 HELIX 7 7 ALA A 162 LEU A 167 1 6 HELIX 8 8 PRO A 252 ILE A 262 1 11 SHEET 1 A 3 TYR A 3 SER A 7 0 SHEET 2 A 3 ILE A 38 GLY A 43 1 O ILE A 40 N MET A 4 SHEET 3 A 3 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 B 6 ALA A 116 ALA A 120 0 SHEET 2 B 6 GLN A 96 TYR A 109 -1 N VAL A 107 O ALA A 116 SHEET 3 B 6 VAL A 231 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 B 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 B 6 PHE A 133 ILE A 139 -1 N ASP A 136 O GLN A 210 SHEET 6 B 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 C 6 LEU A 199 PRO A 202 0 SHEET 2 C 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 C 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 C 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 C 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 6 C 6 LEU A 224 HIS A 228 -1 O ILE A 226 N ILE A 219 CISPEP 1 GLY A 131 PRO A 132 0 0.27 SITE 1 AC1 10 ASN A 122 GLU A 123 GLY A 149 ASP A 150 SITE 2 AC1 10 ALA A 162 TYR A 163 SER A 166 ALA A 185 SITE 3 AC1 10 ILE A 187 ASP A 222 SITE 1 AC2 6 ASP A 45 PHE A 74 ASN A 122 SER A 158 SITE 2 AC2 6 THR A 161 ALA A 162 SITE 1 AC3 9 TYR A 100 HIS A 173 ARG A 247 PHE A 251 SITE 2 AC3 9 PRO A 252 PHE A 253 ARG A 256 HOH A 422 SITE 3 AC3 9 HOH A 426 CRYST1 63.169 75.060 118.588 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008433 0.00000