data_3VA3 # _entry.id 3VA3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VA3 pdb_00003va3 10.2210/pdb3va3/pdb NDB NA1526 ? ? RCSB RCSB069785 ? ? WWPDB D_1000069785 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NGY . unspecified PDB 3NGZ . unspecified PDB 3NH0 . unspecified PDB 3NH1 . unspecified PDB 3NH2 . unspecified PDB 3V9S . unspecified PDB 3V9U . unspecified PDB 3V9W . unspecified PDB 3V9X . unspecified PDB 3V9Z . unspecified PDB 3VA0 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VA3 _pdbx_database_status.recvd_initial_deposition_date 2011-12-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hsiao, Y.-Y.' 1 'Yuan, H.S.' 2 # _citation.id primary _citation.title 'How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 8144 _citation.page_last 8154 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22718982 _citation.pdbx_database_id_DOI 10.1093/nar/gks548 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hsiao, Y.-Y.' 1 ? primary 'Duh, Y.' 2 ? primary 'Chen, Y.P.' 3 ? primary 'Wang, Y.T.' 4 ? primary 'Yuan, H.S.' 5 ? # _cell.entry_id 3VA3 _cell.length_a 100.266 _cell.length_b 112.684 _cell.length_c 57.793 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VA3 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease T' 25646.973 2 3.1.13.- E92G ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3') ; 5474.526 2 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Exoribonuclease T, RNase T' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHF HVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKR NPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV ; ;MGSSHHHHHHSSGLVPRGSHMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHF HVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKR NPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV ; A,B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DC)(DC)(DT)(DC)(DT)(DT)(DT)(DA)(DG)(DG)(DG)(DC)(DC)(DT)(DT)' GGCCCTCTTTAGGGCCTT C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 SER n 1 23 ASP n 1 24 ASN n 1 25 ALA n 1 26 GLN n 1 27 LEU n 1 28 THR n 1 29 GLY n 1 30 LEU n 1 31 CYS n 1 32 ASP n 1 33 ARG n 1 34 PHE n 1 35 ARG n 1 36 GLY n 1 37 PHE n 1 38 TYR n 1 39 PRO n 1 40 VAL n 1 41 VAL n 1 42 ILE n 1 43 ASP n 1 44 VAL n 1 45 GLU n 1 46 THR n 1 47 ALA n 1 48 GLY n 1 49 PHE n 1 50 ASN n 1 51 ALA n 1 52 LYS n 1 53 THR n 1 54 ASP n 1 55 ALA n 1 56 LEU n 1 57 LEU n 1 58 GLU n 1 59 ILE n 1 60 ALA n 1 61 ALA n 1 62 ILE n 1 63 THR n 1 64 LEU n 1 65 LYS n 1 66 MET n 1 67 ASP n 1 68 GLU n 1 69 GLN n 1 70 GLY n 1 71 TRP n 1 72 LEU n 1 73 MET n 1 74 PRO n 1 75 ASP n 1 76 THR n 1 77 THR n 1 78 LEU n 1 79 HIS n 1 80 PHE n 1 81 HIS n 1 82 VAL n 1 83 GLU n 1 84 PRO n 1 85 PHE n 1 86 VAL n 1 87 GLY n 1 88 ALA n 1 89 ASN n 1 90 LEU n 1 91 GLN n 1 92 PRO n 1 93 GLU n 1 94 ALA n 1 95 LEU n 1 96 ALA n 1 97 PHE n 1 98 ASN n 1 99 GLY n 1 100 ILE n 1 101 ASP n 1 102 PRO n 1 103 ASN n 1 104 ASP n 1 105 PRO n 1 106 ASP n 1 107 ARG n 1 108 GLY n 1 109 ALA n 1 110 VAL n 1 111 SER n 1 112 GLY n 1 113 TYR n 1 114 GLU n 1 115 ALA n 1 116 LEU n 1 117 HIS n 1 118 GLU n 1 119 ILE n 1 120 PHE n 1 121 LYS n 1 122 VAL n 1 123 VAL n 1 124 ARG n 1 125 LYS n 1 126 GLY n 1 127 ILE n 1 128 LYS n 1 129 ALA n 1 130 SER n 1 131 GLY n 1 132 CYS n 1 133 ASN n 1 134 ARG n 1 135 ALA n 1 136 ILE n 1 137 MET n 1 138 VAL n 1 139 ALA n 1 140 HIS n 1 141 ASN n 1 142 ALA n 1 143 ASN n 1 144 PHE n 1 145 ASP n 1 146 HIS n 1 147 SER n 1 148 PHE n 1 149 MET n 1 150 MET n 1 151 ALA n 1 152 ALA n 1 153 ALA n 1 154 GLU n 1 155 ARG n 1 156 ALA n 1 157 SER n 1 158 LEU n 1 159 LYS n 1 160 ARG n 1 161 ASN n 1 162 PRO n 1 163 PHE n 1 164 HIS n 1 165 PRO n 1 166 PHE n 1 167 ALA n 1 168 THR n 1 169 PHE n 1 170 ASP n 1 171 THR n 1 172 ALA n 1 173 ALA n 1 174 LEU n 1 175 ALA n 1 176 GLY n 1 177 LEU n 1 178 ALA n 1 179 LEU n 1 180 GLY n 1 181 GLN n 1 182 THR n 1 183 VAL n 1 184 LEU n 1 185 SER n 1 186 LYS n 1 187 ALA n 1 188 CYS n 1 189 GLN n 1 190 THR n 1 191 ALA n 1 192 GLY n 1 193 MET n 1 194 ASP n 1 195 PHE n 1 196 ASP n 1 197 SER n 1 198 THR n 1 199 GLN n 1 200 ALA n 1 201 HIS n 1 202 SER n 1 203 ALA n 1 204 LEU n 1 205 TYR n 1 206 ASP n 1 207 THR n 1 208 GLU n 1 209 ARG n 1 210 THR n 1 211 ALA n 1 212 VAL n 1 213 LEU n 1 214 PHE n 1 215 CYS n 1 216 GLU n 1 217 ILE n 1 218 VAL n 1 219 ASN n 1 220 ARG n 1 221 TRP n 1 222 LYS n 1 223 ARG n 1 224 LEU n 1 225 GLY n 1 226 GLY n 1 227 TRP n 1 228 PRO n 1 229 LEU n 1 230 SER n 1 231 ALA n 1 232 ALA n 1 233 GLU n 1 234 GLU n 1 235 VAL n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DC n 2 5 DC n 2 6 DT n 2 7 DC n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DA n 2 12 DG n 2 13 DG n 2 14 DG n 2 15 DC n 2 16 DC n 2 17 DT n 2 18 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic construct' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNT_ECOLI P30014 1 ;MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI DPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV ; 1 ? 2 PDB 3VA3 3VA3 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VA3 A 21 ? 235 ? P30014 1 ? 215 ? 1 215 2 1 3VA3 B 21 ? 235 ? P30014 1 ? 215 ? 1 215 3 2 3VA3 C 1 ? 18 ? 3VA3 1 ? 18 ? 1 18 4 2 3VA3 D 1 ? 18 ? 3VA3 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VA3 MET A 1 ? UNP P30014 ? ? 'expression tag' -19 1 1 3VA3 GLY A 2 ? UNP P30014 ? ? 'expression tag' -18 2 1 3VA3 SER A 3 ? UNP P30014 ? ? 'expression tag' -17 3 1 3VA3 SER A 4 ? UNP P30014 ? ? 'expression tag' -16 4 1 3VA3 HIS A 5 ? UNP P30014 ? ? 'expression tag' -15 5 1 3VA3 HIS A 6 ? UNP P30014 ? ? 'expression tag' -14 6 1 3VA3 HIS A 7 ? UNP P30014 ? ? 'expression tag' -13 7 1 3VA3 HIS A 8 ? UNP P30014 ? ? 'expression tag' -12 8 1 3VA3 HIS A 9 ? UNP P30014 ? ? 'expression tag' -11 9 1 3VA3 HIS A 10 ? UNP P30014 ? ? 'expression tag' -10 10 1 3VA3 SER A 11 ? UNP P30014 ? ? 'expression tag' -9 11 1 3VA3 SER A 12 ? UNP P30014 ? ? 'expression tag' -8 12 1 3VA3 GLY A 13 ? UNP P30014 ? ? 'expression tag' -7 13 1 3VA3 LEU A 14 ? UNP P30014 ? ? 'expression tag' -6 14 1 3VA3 VAL A 15 ? UNP P30014 ? ? 'expression tag' -5 15 1 3VA3 PRO A 16 ? UNP P30014 ? ? 'expression tag' -4 16 1 3VA3 ARG A 17 ? UNP P30014 ? ? 'expression tag' -3 17 1 3VA3 GLY A 18 ? UNP P30014 ? ? 'expression tag' -2 18 1 3VA3 SER A 19 ? UNP P30014 ? ? 'expression tag' -1 19 1 3VA3 HIS A 20 ? UNP P30014 ? ? 'expression tag' 0 20 1 3VA3 GLY A 112 ? UNP P30014 GLU 92 'engineered mutation' 92 21 2 3VA3 MET B 1 ? UNP P30014 ? ? 'expression tag' -19 22 2 3VA3 GLY B 2 ? UNP P30014 ? ? 'expression tag' -18 23 2 3VA3 SER B 3 ? UNP P30014 ? ? 'expression tag' -17 24 2 3VA3 SER B 4 ? UNP P30014 ? ? 'expression tag' -16 25 2 3VA3 HIS B 5 ? UNP P30014 ? ? 'expression tag' -15 26 2 3VA3 HIS B 6 ? UNP P30014 ? ? 'expression tag' -14 27 2 3VA3 HIS B 7 ? UNP P30014 ? ? 'expression tag' -13 28 2 3VA3 HIS B 8 ? UNP P30014 ? ? 'expression tag' -12 29 2 3VA3 HIS B 9 ? UNP P30014 ? ? 'expression tag' -11 30 2 3VA3 HIS B 10 ? UNP P30014 ? ? 'expression tag' -10 31 2 3VA3 SER B 11 ? UNP P30014 ? ? 'expression tag' -9 32 2 3VA3 SER B 12 ? UNP P30014 ? ? 'expression tag' -8 33 2 3VA3 GLY B 13 ? UNP P30014 ? ? 'expression tag' -7 34 2 3VA3 LEU B 14 ? UNP P30014 ? ? 'expression tag' -6 35 2 3VA3 VAL B 15 ? UNP P30014 ? ? 'expression tag' -5 36 2 3VA3 PRO B 16 ? UNP P30014 ? ? 'expression tag' -4 37 2 3VA3 ARG B 17 ? UNP P30014 ? ? 'expression tag' -3 38 2 3VA3 GLY B 18 ? UNP P30014 ? ? 'expression tag' -2 39 2 3VA3 SER B 19 ? UNP P30014 ? ? 'expression tag' -1 40 2 3VA3 HIS B 20 ? UNP P30014 ? ? 'expression tag' 0 41 2 3VA3 GLY B 112 ? UNP P30014 GLU 92 'engineered mutation' 92 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VA3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 53.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1M Sodium acetate trihydrate, 10%(w/v) Polyethylene glycol 1000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2010-10-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(III)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9999 # _reflns.entry_id 3VA3 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.7 _reflns.number_obs 17286 _reflns.number_all 17286 _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.102 _reflns.pdbx_netI_over_sigmaI 13.36 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 93.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.412 _reflns_shell.meanI_over_sigI_obs 2.24 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1667 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VA3 _refine.ls_number_reflns_obs 17239 _refine.ls_number_reflns_all 17239 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.932 _refine.ls_d_res_high 2.714 _refine.ls_percent_reflns_obs 93.96 _refine.ls_R_factor_obs 0.2653 _refine.ls_R_factor_all 0.2653 _refine.ls_R_factor_R_work 0.2631 _refine.ls_R_factor_R_free 0.2904 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.88 _refine.ls_number_reflns_R_free 1358 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 60.8134 _refine.aniso_B[1][1] -14.4969 _refine.aniso_B[2][2] -32.3874 _refine.aniso_B[3][3] 46.8843 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.252 _refine.solvent_model_param_bsol 24.177 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.06 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 3NGY _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.76 _refine.overall_FOM_work_R_set 0.7073 _refine.B_iso_max 118.470 _refine.B_iso_min 42.660 _refine.pdbx_overall_phase_error 34.1700 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3149 _refine_hist.pdbx_number_atoms_nucleic_acid 318 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 3506 _refine_hist.d_res_high 2.714 _refine_hist.d_res_low 28.932 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 3576 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4911 0.685 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 546 0.044 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 591 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1287 15.903 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.7137 2.8106 10 91.0000 1492 . 0.3896 0.4334 . 137 . 1629 . 'X-RAY DIFFRACTION' . 2.8106 2.9230 10 94.0000 1541 . 0.3668 0.4368 . 151 . 1692 . 'X-RAY DIFFRACTION' . 2.9230 3.0559 10 95.0000 1591 . 0.3380 0.3698 . 144 . 1735 . 'X-RAY DIFFRACTION' . 3.0559 3.2168 10 96.0000 1603 . 0.3052 0.3120 . 142 . 1745 . 'X-RAY DIFFRACTION' . 3.2168 3.4181 10 97.0000 1621 . 0.2788 0.2912 . 128 . 1749 . 'X-RAY DIFFRACTION' . 3.4181 3.6815 10 87.0000 1463 . 0.2761 0.3282 . 119 . 1582 . 'X-RAY DIFFRACTION' . 3.6815 4.0511 10 87.0000 1466 . 0.2467 0.2467 . 114 . 1580 . 'X-RAY DIFFRACTION' . 4.0511 4.6352 10 98.0000 1670 . 0.2009 0.2387 . 148 . 1818 . 'X-RAY DIFFRACTION' . 4.6352 5.8321 10 98.0000 1691 . 0.2343 0.2492 . 126 . 1817 . 'X-RAY DIFFRACTION' . 5.8321 28.9340 10 96.0000 1743 . 0.2409 0.2597 . 149 . 1892 . 'X-RAY DIFFRACTION' . # _struct.entry_id 3VA3 _struct.title ;Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VA3 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DEDD nucleases family, exo-nuclease, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 29 ? PHE A 34 ? GLY A 9 PHE A 14 1 ? 6 HELX_P HELX_P2 2 GLN A 91 ? GLY A 99 ? GLN A 71 GLY A 79 1 ? 9 HELX_P HELX_P3 3 ASP A 104 ? GLY A 108 ? ASP A 84 GLY A 88 5 ? 5 HELX_P HELX_P4 4 GLY A 112 ? GLY A 131 ? GLY A 92 GLY A 111 1 ? 20 HELX_P HELX_P5 5 ALA A 142 ? ALA A 156 ? ALA A 122 ALA A 136 1 ? 15 HELX_P HELX_P6 6 THR A 171 ? LEU A 179 ? THR A 151 LEU A 159 1 ? 9 HELX_P HELX_P7 7 VAL A 183 ? ALA A 191 ? VAL A 163 ALA A 171 1 ? 9 HELX_P HELX_P8 8 ASP A 196 ? HIS A 201 ? ASP A 176 HIS A 181 1 ? 6 HELX_P HELX_P9 9 SER A 202 ? LEU A 224 ? SER A 182 LEU A 204 1 ? 23 HELX_P HELX_P10 10 GLY B 29 ? PHE B 34 ? GLY B 9 PHE B 14 1 ? 6 HELX_P HELX_P11 11 GLN B 91 ? GLY B 99 ? GLN B 71 GLY B 79 1 ? 9 HELX_P HELX_P12 12 ASP B 104 ? ARG B 107 ? ASP B 84 ARG B 87 5 ? 4 HELX_P HELX_P13 13 SER B 111 ? SER B 130 ? SER B 91 SER B 110 1 ? 20 HELX_P HELX_P14 14 ALA B 142 ? ALA B 156 ? ALA B 122 ALA B 136 1 ? 15 HELX_P HELX_P15 15 THR B 171 ? LEU B 179 ? THR B 151 LEU B 159 1 ? 9 HELX_P HELX_P16 16 VAL B 183 ? ALA B 191 ? VAL B 163 ALA B 171 1 ? 9 HELX_P HELX_P17 17 ASP B 196 ? ALA B 200 ? ASP B 176 ALA B 180 5 ? 5 HELX_P HELX_P18 18 SER B 202 ? LEU B 224 ? SER B 182 LEU B 204 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DT 17 O4 ? ? C DG 1 C DT 17 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog2 hydrog ? ? C DG 2 N1 ? ? ? 1_555 C DC 15 N3 ? ? C DG 2 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 2 N2 ? ? ? 1_555 C DC 15 O2 ? ? C DG 2 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 2 O6 ? ? ? 1_555 C DC 15 N4 ? ? C DG 2 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 3 N3 ? ? ? 1_555 C DG 14 N1 ? ? C DC 3 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 3 N4 ? ? ? 1_555 C DG 14 O6 ? ? C DC 3 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 O2 ? ? ? 1_555 C DG 14 N2 ? ? C DC 3 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 4 N3 ? ? ? 1_555 C DG 13 N1 ? ? C DC 4 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 4 N4 ? ? ? 1_555 C DG 13 O6 ? ? C DC 4 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 4 O2 ? ? ? 1_555 C DG 13 N2 ? ? C DC 4 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 227 A . ? TRP 207 A PRO 228 A ? PRO 208 A 1 0.39 2 TRP 227 B . ? TRP 207 B PRO 228 B ? PRO 208 B 1 -0.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 110 ? SER A 111 ? VAL A 90 SER A 91 A 2 LEU A 72 ? GLU A 83 ? LEU A 52 GLU A 63 A 3 LEU A 56 ? MET A 66 ? LEU A 36 MET A 46 A 4 PHE A 37 ? THR A 46 ? PHE A 17 THR A 26 A 5 ARG A 134 ? ALA A 139 ? ARG A 114 ALA A 119 A 6 PHE A 163 ? ASP A 170 ? PHE A 143 ASP A 150 B 1 ALA B 109 ? VAL B 110 ? ALA B 89 VAL B 90 B 2 LEU B 72 ? VAL B 82 ? LEU B 52 VAL B 62 B 3 LEU B 56 ? MET B 66 ? LEU B 36 MET B 46 B 4 PHE B 37 ? THR B 46 ? PHE B 17 THR B 26 B 5 ARG B 134 ? ALA B 139 ? ARG B 114 ALA B 119 B 6 PHE B 163 ? ASP B 170 ? PHE B 143 ASP B 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 110 ? O VAL A 90 N GLU A 83 ? N GLU A 63 A 2 3 O VAL A 82 ? O VAL A 62 N LEU A 57 ? N LEU A 37 A 3 4 O ILE A 62 ? O ILE A 42 N VAL A 41 ? N VAL A 21 A 4 5 N VAL A 40 ? N VAL A 20 O VAL A 138 ? O VAL A 118 A 5 6 N MET A 137 ? N MET A 117 O PHE A 169 ? O PHE A 149 B 1 2 O VAL B 110 ? O VAL B 90 N HIS B 81 ? N HIS B 61 B 2 3 O VAL B 82 ? O VAL B 62 N LEU B 57 ? N LEU B 37 B 3 4 O LEU B 57 ? O LEU B 37 N GLU B 45 ? N GLU B 25 B 4 5 N VAL B 40 ? N VAL B 20 O VAL B 138 ? O VAL B 118 B 5 6 N ALA B 139 ? N ALA B 119 O PHE B 169 ? O PHE B 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 301 ? 2 'BINDING SITE FOR RESIDUE CO A 301' AC2 Software B CO 301 ? 2 'BINDING SITE FOR RESIDUE CO B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 112 ? GLY A 92 . ? 1_555 ? 2 AC1 2 HOH G . ? HOH A 402 . ? 1_555 ? 3 AC2 2 GLY B 112 ? GLY B 92 . ? 1_555 ? 4 AC2 2 ARG B 155 ? ARG B 135 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VA3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VA3 _atom_sites.fract_transf_matrix[1][1] 0.009973 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017303 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 SER 22 2 ? ? ? A . n A 1 23 ASP 23 3 ? ? ? A . n A 1 24 ASN 24 4 ? ? ? A . n A 1 25 ALA 25 5 ? ? ? A . n A 1 26 GLN 26 6 6 GLN GLN A . n A 1 27 LEU 27 7 7 LEU LEU A . n A 1 28 THR 28 8 8 THR THR A . n A 1 29 GLY 29 9 9 GLY GLY A . n A 1 30 LEU 30 10 10 LEU LEU A . n A 1 31 CYS 31 11 11 CYS CYS A . n A 1 32 ASP 32 12 12 ASP ASP A . n A 1 33 ARG 33 13 13 ARG ARG A . n A 1 34 PHE 34 14 14 PHE PHE A . n A 1 35 ARG 35 15 15 ARG ARG A . n A 1 36 GLY 36 16 16 GLY GLY A . n A 1 37 PHE 37 17 17 PHE PHE A . n A 1 38 TYR 38 18 18 TYR TYR A . n A 1 39 PRO 39 19 19 PRO PRO A . n A 1 40 VAL 40 20 20 VAL VAL A . n A 1 41 VAL 41 21 21 VAL VAL A . n A 1 42 ILE 42 22 22 ILE ILE A . n A 1 43 ASP 43 23 23 ASP ASP A . n A 1 44 VAL 44 24 24 VAL VAL A . n A 1 45 GLU 45 25 25 GLU GLU A . n A 1 46 THR 46 26 26 THR THR A . n A 1 47 ALA 47 27 27 ALA ALA A . n A 1 48 GLY 48 28 28 GLY GLY A . n A 1 49 PHE 49 29 29 PHE PHE A . n A 1 50 ASN 50 30 30 ASN ASN A . n A 1 51 ALA 51 31 31 ALA ALA A . n A 1 52 LYS 52 32 32 LYS LYS A . n A 1 53 THR 53 33 33 THR THR A . n A 1 54 ASP 54 34 34 ASP ASP A . n A 1 55 ALA 55 35 35 ALA ALA A . n A 1 56 LEU 56 36 36 LEU LEU A . n A 1 57 LEU 57 37 37 LEU LEU A . n A 1 58 GLU 58 38 38 GLU GLU A . n A 1 59 ILE 59 39 39 ILE ILE A . n A 1 60 ALA 60 40 40 ALA ALA A . n A 1 61 ALA 61 41 41 ALA ALA A . n A 1 62 ILE 62 42 42 ILE ILE A . n A 1 63 THR 63 43 43 THR THR A . n A 1 64 LEU 64 44 44 LEU LEU A . n A 1 65 LYS 65 45 45 LYS LYS A . n A 1 66 MET 66 46 46 MET MET A . n A 1 67 ASP 67 47 47 ASP ASP A . n A 1 68 GLU 68 48 48 GLU GLU A . n A 1 69 GLN 69 49 49 GLN GLN A . n A 1 70 GLY 70 50 50 GLY GLY A . n A 1 71 TRP 71 51 51 TRP TRP A . n A 1 72 LEU 72 52 52 LEU LEU A . n A 1 73 MET 73 53 53 MET MET A . n A 1 74 PRO 74 54 54 PRO PRO A . n A 1 75 ASP 75 55 55 ASP ASP A . n A 1 76 THR 76 56 56 THR THR A . n A 1 77 THR 77 57 57 THR THR A . n A 1 78 LEU 78 58 58 LEU LEU A . n A 1 79 HIS 79 59 59 HIS HIS A . n A 1 80 PHE 80 60 60 PHE PHE A . n A 1 81 HIS 81 61 61 HIS HIS A . n A 1 82 VAL 82 62 62 VAL VAL A . n A 1 83 GLU 83 63 63 GLU GLU A . n A 1 84 PRO 84 64 64 PRO PRO A . n A 1 85 PHE 85 65 65 PHE PHE A . n A 1 86 VAL 86 66 66 VAL VAL A . n A 1 87 GLY 87 67 67 GLY GLY A . n A 1 88 ALA 88 68 68 ALA ALA A . n A 1 89 ASN 89 69 69 ASN ASN A . n A 1 90 LEU 90 70 70 LEU LEU A . n A 1 91 GLN 91 71 71 GLN GLN A . n A 1 92 PRO 92 72 72 PRO PRO A . n A 1 93 GLU 93 73 73 GLU GLU A . n A 1 94 ALA 94 74 74 ALA ALA A . n A 1 95 LEU 95 75 75 LEU LEU A . n A 1 96 ALA 96 76 76 ALA ALA A . n A 1 97 PHE 97 77 77 PHE PHE A . n A 1 98 ASN 98 78 78 ASN ASN A . n A 1 99 GLY 99 79 79 GLY GLY A . n A 1 100 ILE 100 80 80 ILE ILE A . n A 1 101 ASP 101 81 81 ASP ASP A . n A 1 102 PRO 102 82 82 PRO PRO A . n A 1 103 ASN 103 83 83 ASN ASN A . n A 1 104 ASP 104 84 84 ASP ASP A . n A 1 105 PRO 105 85 85 PRO PRO A . n A 1 106 ASP 106 86 86 ASP ASP A . n A 1 107 ARG 107 87 87 ARG ARG A . n A 1 108 GLY 108 88 88 GLY GLY A . n A 1 109 ALA 109 89 89 ALA ALA A . n A 1 110 VAL 110 90 90 VAL VAL A . n A 1 111 SER 111 91 91 SER SER A . n A 1 112 GLY 112 92 92 GLY GLY A . n A 1 113 TYR 113 93 93 TYR TYR A . n A 1 114 GLU 114 94 94 GLU GLU A . n A 1 115 ALA 115 95 95 ALA ALA A . n A 1 116 LEU 116 96 96 LEU LEU A . n A 1 117 HIS 117 97 97 HIS HIS A . n A 1 118 GLU 118 98 98 GLU GLU A . n A 1 119 ILE 119 99 99 ILE ILE A . n A 1 120 PHE 120 100 100 PHE PHE A . n A 1 121 LYS 121 101 101 LYS LYS A . n A 1 122 VAL 122 102 102 VAL VAL A . n A 1 123 VAL 123 103 103 VAL VAL A . n A 1 124 ARG 124 104 104 ARG ARG A . n A 1 125 LYS 125 105 105 LYS LYS A . n A 1 126 GLY 126 106 106 GLY GLY A . n A 1 127 ILE 127 107 107 ILE ILE A . n A 1 128 LYS 128 108 108 LYS LYS A . n A 1 129 ALA 129 109 109 ALA ALA A . n A 1 130 SER 130 110 110 SER SER A . n A 1 131 GLY 131 111 111 GLY GLY A . n A 1 132 CYS 132 112 112 CYS CYS A . n A 1 133 ASN 133 113 113 ASN ASN A . n A 1 134 ARG 134 114 114 ARG ARG A . n A 1 135 ALA 135 115 115 ALA ALA A . n A 1 136 ILE 136 116 116 ILE ILE A . n A 1 137 MET 137 117 117 MET MET A . n A 1 138 VAL 138 118 118 VAL VAL A . n A 1 139 ALA 139 119 119 ALA ALA A . n A 1 140 HIS 140 120 120 HIS HIS A . n A 1 141 ASN 141 121 121 ASN ASN A . n A 1 142 ALA 142 122 122 ALA ALA A . n A 1 143 ASN 143 123 123 ASN ASN A . n A 1 144 PHE 144 124 124 PHE PHE A . n A 1 145 ASP 145 125 125 ASP ASP A . n A 1 146 HIS 146 126 126 HIS HIS A . n A 1 147 SER 147 127 127 SER SER A . n A 1 148 PHE 148 128 128 PHE PHE A . n A 1 149 MET 149 129 129 MET MET A . n A 1 150 MET 150 130 130 MET MET A . n A 1 151 ALA 151 131 131 ALA ALA A . n A 1 152 ALA 152 132 132 ALA ALA A . n A 1 153 ALA 153 133 133 ALA ALA A . n A 1 154 GLU 154 134 134 GLU GLU A . n A 1 155 ARG 155 135 135 ARG ARG A . n A 1 156 ALA 156 136 136 ALA ALA A . n A 1 157 SER 157 137 137 SER SER A . n A 1 158 LEU 158 138 138 LEU LEU A . n A 1 159 LYS 159 139 139 LYS LYS A . n A 1 160 ARG 160 140 140 ARG ARG A . n A 1 161 ASN 161 141 141 ASN ASN A . n A 1 162 PRO 162 142 142 PRO PRO A . n A 1 163 PHE 163 143 143 PHE PHE A . n A 1 164 HIS 164 144 144 HIS HIS A . n A 1 165 PRO 165 145 145 PRO PRO A . n A 1 166 PHE 166 146 146 PHE PHE A . n A 1 167 ALA 167 147 147 ALA ALA A . n A 1 168 THR 168 148 148 THR THR A . n A 1 169 PHE 169 149 149 PHE PHE A . n A 1 170 ASP 170 150 150 ASP ASP A . n A 1 171 THR 171 151 151 THR THR A . n A 1 172 ALA 172 152 152 ALA ALA A . n A 1 173 ALA 173 153 153 ALA ALA A . n A 1 174 LEU 174 154 154 LEU LEU A . n A 1 175 ALA 175 155 155 ALA ALA A . n A 1 176 GLY 176 156 156 GLY GLY A . n A 1 177 LEU 177 157 157 LEU LEU A . n A 1 178 ALA 178 158 158 ALA ALA A . n A 1 179 LEU 179 159 159 LEU LEU A . n A 1 180 GLY 180 160 160 GLY GLY A . n A 1 181 GLN 181 161 161 GLN GLN A . n A 1 182 THR 182 162 162 THR THR A . n A 1 183 VAL 183 163 163 VAL VAL A . n A 1 184 LEU 184 164 164 LEU LEU A . n A 1 185 SER 185 165 165 SER SER A . n A 1 186 LYS 186 166 166 LYS LYS A . n A 1 187 ALA 187 167 167 ALA ALA A . n A 1 188 CYS 188 168 168 CYS CYS A . n A 1 189 GLN 189 169 169 GLN GLN A . n A 1 190 THR 190 170 170 THR THR A . n A 1 191 ALA 191 171 171 ALA ALA A . n A 1 192 GLY 192 172 172 GLY GLY A . n A 1 193 MET 193 173 173 MET MET A . n A 1 194 ASP 194 174 174 ASP ASP A . n A 1 195 PHE 195 175 175 PHE PHE A . n A 1 196 ASP 196 176 176 ASP ASP A . n A 1 197 SER 197 177 177 SER SER A . n A 1 198 THR 198 178 178 THR THR A . n A 1 199 GLN 199 179 179 GLN GLN A . n A 1 200 ALA 200 180 180 ALA ALA A . n A 1 201 HIS 201 181 181 HIS HIS A . n A 1 202 SER 202 182 182 SER SER A . n A 1 203 ALA 203 183 183 ALA ALA A . n A 1 204 LEU 204 184 184 LEU LEU A . n A 1 205 TYR 205 185 185 TYR TYR A . n A 1 206 ASP 206 186 186 ASP ASP A . n A 1 207 THR 207 187 187 THR THR A . n A 1 208 GLU 208 188 188 GLU GLU A . n A 1 209 ARG 209 189 189 ARG ARG A . n A 1 210 THR 210 190 190 THR THR A . n A 1 211 ALA 211 191 191 ALA ALA A . n A 1 212 VAL 212 192 192 VAL VAL A . n A 1 213 LEU 213 193 193 LEU LEU A . n A 1 214 PHE 214 194 194 PHE PHE A . n A 1 215 CYS 215 195 195 CYS CYS A . n A 1 216 GLU 216 196 196 GLU GLU A . n A 1 217 ILE 217 197 197 ILE ILE A . n A 1 218 VAL 218 198 198 VAL VAL A . n A 1 219 ASN 219 199 199 ASN ASN A . n A 1 220 ARG 220 200 200 ARG ARG A . n A 1 221 TRP 221 201 201 TRP TRP A . n A 1 222 LYS 222 202 202 LYS LYS A . n A 1 223 ARG 223 203 203 ARG ARG A . n A 1 224 LEU 224 204 204 LEU LEU A . n A 1 225 GLY 225 205 205 GLY GLY A . n A 1 226 GLY 226 206 206 GLY GLY A . n A 1 227 TRP 227 207 207 TRP TRP A . n A 1 228 PRO 228 208 208 PRO PRO A . n A 1 229 LEU 229 209 209 LEU LEU A . n A 1 230 SER 230 210 210 SER SER A . n A 1 231 ALA 231 211 ? ? ? A . n A 1 232 ALA 232 212 ? ? ? A . n A 1 233 GLU 233 213 ? ? ? A . n A 1 234 GLU 234 214 ? ? ? A . n A 1 235 VAL 235 215 ? ? ? A . n B 1 1 MET 1 -19 ? ? ? B . n B 1 2 GLY 2 -18 ? ? ? B . n B 1 3 SER 3 -17 ? ? ? B . n B 1 4 SER 4 -16 ? ? ? B . n B 1 5 HIS 5 -15 ? ? ? B . n B 1 6 HIS 6 -14 ? ? ? B . n B 1 7 HIS 7 -13 ? ? ? B . n B 1 8 HIS 8 -12 ? ? ? B . n B 1 9 HIS 9 -11 ? ? ? B . n B 1 10 HIS 10 -10 ? ? ? B . n B 1 11 SER 11 -9 ? ? ? B . n B 1 12 SER 12 -8 ? ? ? B . n B 1 13 GLY 13 -7 ? ? ? B . n B 1 14 LEU 14 -6 ? ? ? B . n B 1 15 VAL 15 -5 ? ? ? B . n B 1 16 PRO 16 -4 ? ? ? B . n B 1 17 ARG 17 -3 ? ? ? B . n B 1 18 GLY 18 -2 ? ? ? B . n B 1 19 SER 19 -1 ? ? ? B . n B 1 20 HIS 20 0 ? ? ? B . n B 1 21 MET 21 1 ? ? ? B . n B 1 22 SER 22 2 ? ? ? B . n B 1 23 ASP 23 3 ? ? ? B . n B 1 24 ASN 24 4 ? ? ? B . n B 1 25 ALA 25 5 ? ? ? B . n B 1 26 GLN 26 6 ? ? ? B . n B 1 27 LEU 27 7 ? ? ? B . n B 1 28 THR 28 8 8 THR THR B . n B 1 29 GLY 29 9 9 GLY GLY B . n B 1 30 LEU 30 10 10 LEU LEU B . n B 1 31 CYS 31 11 11 CYS CYS B . n B 1 32 ASP 32 12 12 ASP ASP B . n B 1 33 ARG 33 13 13 ARG ARG B . n B 1 34 PHE 34 14 14 PHE PHE B . n B 1 35 ARG 35 15 15 ARG ARG B . n B 1 36 GLY 36 16 16 GLY GLY B . n B 1 37 PHE 37 17 17 PHE PHE B . n B 1 38 TYR 38 18 18 TYR TYR B . n B 1 39 PRO 39 19 19 PRO PRO B . n B 1 40 VAL 40 20 20 VAL VAL B . n B 1 41 VAL 41 21 21 VAL VAL B . n B 1 42 ILE 42 22 22 ILE ILE B . n B 1 43 ASP 43 23 23 ASP ASP B . n B 1 44 VAL 44 24 24 VAL VAL B . n B 1 45 GLU 45 25 25 GLU GLU B . n B 1 46 THR 46 26 26 THR THR B . n B 1 47 ALA 47 27 27 ALA ALA B . n B 1 48 GLY 48 28 28 GLY GLY B . n B 1 49 PHE 49 29 29 PHE PHE B . n B 1 50 ASN 50 30 30 ASN ASN B . n B 1 51 ALA 51 31 31 ALA ALA B . n B 1 52 LYS 52 32 32 LYS LYS B . n B 1 53 THR 53 33 33 THR THR B . n B 1 54 ASP 54 34 34 ASP ASP B . n B 1 55 ALA 55 35 35 ALA ALA B . n B 1 56 LEU 56 36 36 LEU LEU B . n B 1 57 LEU 57 37 37 LEU LEU B . n B 1 58 GLU 58 38 38 GLU GLU B . n B 1 59 ILE 59 39 39 ILE ILE B . n B 1 60 ALA 60 40 40 ALA ALA B . n B 1 61 ALA 61 41 41 ALA ALA B . n B 1 62 ILE 62 42 42 ILE ILE B . n B 1 63 THR 63 43 43 THR THR B . n B 1 64 LEU 64 44 44 LEU LEU B . n B 1 65 LYS 65 45 45 LYS LYS B . n B 1 66 MET 66 46 46 MET MET B . n B 1 67 ASP 67 47 47 ASP ASP B . n B 1 68 GLU 68 48 48 GLU GLU B . n B 1 69 GLN 69 49 49 GLN GLN B . n B 1 70 GLY 70 50 50 GLY GLY B . n B 1 71 TRP 71 51 51 TRP TRP B . n B 1 72 LEU 72 52 52 LEU LEU B . n B 1 73 MET 73 53 53 MET MET B . n B 1 74 PRO 74 54 54 PRO PRO B . n B 1 75 ASP 75 55 55 ASP ASP B . n B 1 76 THR 76 56 56 THR THR B . n B 1 77 THR 77 57 57 THR THR B . n B 1 78 LEU 78 58 58 LEU LEU B . n B 1 79 HIS 79 59 59 HIS HIS B . n B 1 80 PHE 80 60 60 PHE PHE B . n B 1 81 HIS 81 61 61 HIS HIS B . n B 1 82 VAL 82 62 62 VAL VAL B . n B 1 83 GLU 83 63 63 GLU GLU B . n B 1 84 PRO 84 64 64 PRO PRO B . n B 1 85 PHE 85 65 65 PHE PHE B . n B 1 86 VAL 86 66 66 VAL VAL B . n B 1 87 GLY 87 67 67 GLY GLY B . n B 1 88 ALA 88 68 68 ALA ALA B . n B 1 89 ASN 89 69 69 ASN ASN B . n B 1 90 LEU 90 70 70 LEU LEU B . n B 1 91 GLN 91 71 71 GLN GLN B . n B 1 92 PRO 92 72 72 PRO PRO B . n B 1 93 GLU 93 73 73 GLU GLU B . n B 1 94 ALA 94 74 74 ALA ALA B . n B 1 95 LEU 95 75 75 LEU LEU B . n B 1 96 ALA 96 76 76 ALA ALA B . n B 1 97 PHE 97 77 77 PHE PHE B . n B 1 98 ASN 98 78 78 ASN ASN B . n B 1 99 GLY 99 79 79 GLY GLY B . n B 1 100 ILE 100 80 80 ILE ILE B . n B 1 101 ASP 101 81 81 ASP ASP B . n B 1 102 PRO 102 82 82 PRO PRO B . n B 1 103 ASN 103 83 83 ASN ASN B . n B 1 104 ASP 104 84 84 ASP ASP B . n B 1 105 PRO 105 85 85 PRO PRO B . n B 1 106 ASP 106 86 86 ASP ASP B . n B 1 107 ARG 107 87 87 ARG ARG B . n B 1 108 GLY 108 88 88 GLY GLY B . n B 1 109 ALA 109 89 89 ALA ALA B . n B 1 110 VAL 110 90 90 VAL VAL B . n B 1 111 SER 111 91 91 SER SER B . n B 1 112 GLY 112 92 92 GLY GLY B . n B 1 113 TYR 113 93 93 TYR TYR B . n B 1 114 GLU 114 94 94 GLU GLU B . n B 1 115 ALA 115 95 95 ALA ALA B . n B 1 116 LEU 116 96 96 LEU LEU B . n B 1 117 HIS 117 97 97 HIS HIS B . n B 1 118 GLU 118 98 98 GLU GLU B . n B 1 119 ILE 119 99 99 ILE ILE B . n B 1 120 PHE 120 100 100 PHE PHE B . n B 1 121 LYS 121 101 101 LYS LYS B . n B 1 122 VAL 122 102 102 VAL VAL B . n B 1 123 VAL 123 103 103 VAL VAL B . n B 1 124 ARG 124 104 104 ARG ARG B . n B 1 125 LYS 125 105 105 LYS LYS B . n B 1 126 GLY 126 106 106 GLY GLY B . n B 1 127 ILE 127 107 107 ILE ILE B . n B 1 128 LYS 128 108 108 LYS LYS B . n B 1 129 ALA 129 109 109 ALA ALA B . n B 1 130 SER 130 110 110 SER SER B . n B 1 131 GLY 131 111 111 GLY GLY B . n B 1 132 CYS 132 112 112 CYS CYS B . n B 1 133 ASN 133 113 113 ASN ASN B . n B 1 134 ARG 134 114 114 ARG ARG B . n B 1 135 ALA 135 115 115 ALA ALA B . n B 1 136 ILE 136 116 116 ILE ILE B . n B 1 137 MET 137 117 117 MET MET B . n B 1 138 VAL 138 118 118 VAL VAL B . n B 1 139 ALA 139 119 119 ALA ALA B . n B 1 140 HIS 140 120 120 HIS HIS B . n B 1 141 ASN 141 121 121 ASN ASN B . n B 1 142 ALA 142 122 122 ALA ALA B . n B 1 143 ASN 143 123 123 ASN ASN B . n B 1 144 PHE 144 124 124 PHE PHE B . n B 1 145 ASP 145 125 125 ASP ASP B . n B 1 146 HIS 146 126 126 HIS HIS B . n B 1 147 SER 147 127 127 SER SER B . n B 1 148 PHE 148 128 128 PHE PHE B . n B 1 149 MET 149 129 129 MET MET B . n B 1 150 MET 150 130 130 MET MET B . n B 1 151 ALA 151 131 131 ALA ALA B . n B 1 152 ALA 152 132 132 ALA ALA B . n B 1 153 ALA 153 133 133 ALA ALA B . n B 1 154 GLU 154 134 134 GLU GLU B . n B 1 155 ARG 155 135 135 ARG ARG B . n B 1 156 ALA 156 136 136 ALA ALA B . n B 1 157 SER 157 137 137 SER SER B . n B 1 158 LEU 158 138 138 LEU LEU B . n B 1 159 LYS 159 139 139 LYS LYS B . n B 1 160 ARG 160 140 140 ARG ARG B . n B 1 161 ASN 161 141 141 ASN ASN B . n B 1 162 PRO 162 142 142 PRO PRO B . n B 1 163 PHE 163 143 143 PHE PHE B . n B 1 164 HIS 164 144 144 HIS HIS B . n B 1 165 PRO 165 145 145 PRO PRO B . n B 1 166 PHE 166 146 146 PHE PHE B . n B 1 167 ALA 167 147 147 ALA ALA B . n B 1 168 THR 168 148 148 THR THR B . n B 1 169 PHE 169 149 149 PHE PHE B . n B 1 170 ASP 170 150 150 ASP ASP B . n B 1 171 THR 171 151 151 THR THR B . n B 1 172 ALA 172 152 152 ALA ALA B . n B 1 173 ALA 173 153 153 ALA ALA B . n B 1 174 LEU 174 154 154 LEU LEU B . n B 1 175 ALA 175 155 155 ALA ALA B . n B 1 176 GLY 176 156 156 GLY GLY B . n B 1 177 LEU 177 157 157 LEU LEU B . n B 1 178 ALA 178 158 158 ALA ALA B . n B 1 179 LEU 179 159 159 LEU LEU B . n B 1 180 GLY 180 160 160 GLY GLY B . n B 1 181 GLN 181 161 161 GLN GLN B . n B 1 182 THR 182 162 162 THR THR B . n B 1 183 VAL 183 163 163 VAL VAL B . n B 1 184 LEU 184 164 164 LEU LEU B . n B 1 185 SER 185 165 165 SER SER B . n B 1 186 LYS 186 166 166 LYS LYS B . n B 1 187 ALA 187 167 167 ALA ALA B . n B 1 188 CYS 188 168 168 CYS CYS B . n B 1 189 GLN 189 169 169 GLN GLN B . n B 1 190 THR 190 170 170 THR THR B . n B 1 191 ALA 191 171 171 ALA ALA B . n B 1 192 GLY 192 172 172 GLY GLY B . n B 1 193 MET 193 173 173 MET MET B . n B 1 194 ASP 194 174 174 ASP ASP B . n B 1 195 PHE 195 175 175 PHE PHE B . n B 1 196 ASP 196 176 176 ASP ASP B . n B 1 197 SER 197 177 177 SER SER B . n B 1 198 THR 198 178 178 THR THR B . n B 1 199 GLN 199 179 179 GLN GLN B . n B 1 200 ALA 200 180 180 ALA ALA B . n B 1 201 HIS 201 181 181 HIS HIS B . n B 1 202 SER 202 182 182 SER SER B . n B 1 203 ALA 203 183 183 ALA ALA B . n B 1 204 LEU 204 184 184 LEU LEU B . n B 1 205 TYR 205 185 185 TYR TYR B . n B 1 206 ASP 206 186 186 ASP ASP B . n B 1 207 THR 207 187 187 THR THR B . n B 1 208 GLU 208 188 188 GLU GLU B . n B 1 209 ARG 209 189 189 ARG ARG B . n B 1 210 THR 210 190 190 THR THR B . n B 1 211 ALA 211 191 191 ALA ALA B . n B 1 212 VAL 212 192 192 VAL VAL B . n B 1 213 LEU 213 193 193 LEU LEU B . n B 1 214 PHE 214 194 194 PHE PHE B . n B 1 215 CYS 215 195 195 CYS CYS B . n B 1 216 GLU 216 196 196 GLU GLU B . n B 1 217 ILE 217 197 197 ILE ILE B . n B 1 218 VAL 218 198 198 VAL VAL B . n B 1 219 ASN 219 199 199 ASN ASN B . n B 1 220 ARG 220 200 200 ARG ARG B . n B 1 221 TRP 221 201 201 TRP TRP B . n B 1 222 LYS 222 202 202 LYS LYS B . n B 1 223 ARG 223 203 203 ARG ARG B . n B 1 224 LEU 224 204 204 LEU LEU B . n B 1 225 GLY 225 205 205 GLY GLY B . n B 1 226 GLY 226 206 206 GLY GLY B . n B 1 227 TRP 227 207 207 TRP TRP B . n B 1 228 PRO 228 208 208 PRO PRO B . n B 1 229 LEU 229 209 209 LEU LEU B . n B 1 230 SER 230 210 210 SER SER B . n B 1 231 ALA 231 211 211 ALA ALA B . n B 1 232 ALA 232 212 212 ALA ALA B . n B 1 233 GLU 233 213 ? ? ? B . n B 1 234 GLU 234 214 ? ? ? B . n B 1 235 VAL 235 215 ? ? ? B . n C 2 1 DG 1 1 1 DG GD C . n C 2 2 DG 2 2 2 DG GD C . n C 2 3 DC 3 3 3 DC CD C . n C 2 4 DC 4 4 4 DC CD C . n C 2 5 DC 5 5 5 DC CD C . n C 2 6 DT 6 6 6 DT TD C . n C 2 7 DC 7 7 ? ? ? C . n C 2 8 DT 8 8 ? ? ? C . n C 2 9 DT 9 9 ? ? ? C . n C 2 10 DT 10 10 ? ? ? C . n C 2 11 DA 11 11 ? ? ? C . n C 2 12 DG 12 12 ? ? ? C . n C 2 13 DG 13 13 13 DG GD C . n C 2 14 DG 14 14 14 DG GD C . n C 2 15 DC 15 15 15 DC CD C . n C 2 16 DC 16 16 16 DC CD C . n C 2 17 DT 17 17 17 DT TD C . n C 2 18 DT 18 18 18 DT TD C . n D 2 1 DG 1 1 ? ? ? D . n D 2 2 DG 2 2 ? ? ? D . n D 2 3 DC 3 3 ? ? ? D . n D 2 4 DC 4 4 ? ? ? D . n D 2 5 DC 5 5 ? ? ? D . n D 2 6 DT 6 6 ? ? ? D . n D 2 7 DC 7 7 ? ? ? D . n D 2 8 DT 8 8 ? ? ? D . n D 2 9 DT 9 9 ? ? ? D . n D 2 10 DT 10 10 ? ? ? D . n D 2 11 DA 11 11 ? ? ? D . n D 2 12 DG 12 12 ? ? ? D . n D 2 13 DG 13 13 ? ? ? D . n D 2 14 DG 14 14 ? ? ? D . n D 2 15 DC 15 15 15 DC CD D . n D 2 16 DC 16 16 16 DC CD D . n D 2 17 DT 17 17 17 DT TD D . n D 2 18 DT 18 18 18 DT TD D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CO 1 301 1 CO CO A . F 3 CO 1 301 1 CO CO B . G 4 HOH 1 401 5 HOH HOH A . G 4 HOH 2 402 7 HOH HOH A . G 4 HOH 3 403 8 HOH HOH A . G 4 HOH 4 404 10 HOH HOH A . G 4 HOH 5 405 17 HOH HOH A . G 4 HOH 6 406 21 HOH HOH A . G 4 HOH 7 407 23 HOH HOH A . G 4 HOH 8 408 29 HOH HOH A . G 4 HOH 9 409 30 HOH HOH A . G 4 HOH 10 410 34 HOH HOH A . G 4 HOH 11 411 35 HOH HOH A . G 4 HOH 12 412 36 HOH HOH A . G 4 HOH 13 413 22 HOH HOH A . H 4 HOH 1 401 1 HOH HOH B . H 4 HOH 2 402 2 HOH HOH B . H 4 HOH 3 403 3 HOH HOH B . H 4 HOH 4 404 4 HOH HOH B . H 4 HOH 5 405 6 HOH HOH B . H 4 HOH 6 406 9 HOH HOH B . H 4 HOH 7 407 12 HOH HOH B . H 4 HOH 8 408 13 HOH HOH B . H 4 HOH 9 409 14 HOH HOH B . H 4 HOH 10 410 15 HOH HOH B . H 4 HOH 11 411 16 HOH HOH B . H 4 HOH 12 412 18 HOH HOH B . H 4 HOH 13 413 19 HOH HOH B . H 4 HOH 14 414 20 HOH HOH B . H 4 HOH 15 415 24 HOH HOH B . H 4 HOH 16 416 25 HOH HOH B . H 4 HOH 17 417 26 HOH HOH B . H 4 HOH 18 418 27 HOH HOH B . H 4 HOH 19 419 28 HOH HOH B . H 4 HOH 20 420 31 HOH HOH B . H 4 HOH 21 421 32 HOH HOH B . H 4 HOH 22 422 33 HOH HOH B . H 4 HOH 23 423 37 HOH HOH B . I 4 HOH 1 101 11 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6200 ? 1 MORE -67 ? 1 'SSA (A^2)' 18210 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2013-06-26 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 416 ? ? O B HOH 421 ? ? 2.08 2 1 OG1 B THR 43 ? ? OG1 B THR 56 ? ? 2.10 3 1 O B ASP 23 ? ? O B HOH 415 ? ? 2.11 4 1 O B HOH 401 ? ? O B HOH 422 ? ? 2.13 5 1 OD2 B ASP 174 ? ? O B HOH 405 ? ? 2.13 6 1 O B PRO 82 ? ? O B HOH 413 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.46 108.30 3.16 0.30 N 2 1 "C4'" C DG 13 ? ? "C3'" C DG 13 ? ? "C2'" C DG 13 ? ? 97.73 102.20 -4.47 0.70 N 3 1 "C3'" C DG 13 ? ? "C2'" C DG 13 ? ? "C1'" C DG 13 ? ? 97.54 102.40 -4.86 0.80 N 4 1 "O4'" D DC 15 ? ? "C1'" D DC 15 ? ? N1 D DC 15 ? ? 111.33 108.30 3.03 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 15 ? ? 49.59 23.45 2 1 ASP A 55 ? ? -111.84 -90.65 3 1 ASN A 141 ? ? -32.10 118.48 4 1 PHE A 146 ? ? -146.68 -2.25 5 1 HIS A 181 ? ? -39.77 -36.91 6 1 ARG B 15 ? ? 37.44 38.76 7 1 ASP B 55 ? ? -97.53 -63.20 8 1 ASP B 86 ? ? -91.40 34.01 9 1 PHE B 146 ? ? -155.06 -4.18 10 1 SER B 177 ? ? -58.72 -9.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A SER 2 ? A SER 22 23 1 Y 1 A ASP 3 ? A ASP 23 24 1 Y 1 A ASN 4 ? A ASN 24 25 1 Y 1 A ALA 5 ? A ALA 25 26 1 Y 1 A ALA 211 ? A ALA 231 27 1 Y 1 A ALA 212 ? A ALA 232 28 1 Y 1 A GLU 213 ? A GLU 233 29 1 Y 1 A GLU 214 ? A GLU 234 30 1 Y 1 A VAL 215 ? A VAL 235 31 1 Y 1 B MET -19 ? B MET 1 32 1 Y 1 B GLY -18 ? B GLY 2 33 1 Y 1 B SER -17 ? B SER 3 34 1 Y 1 B SER -16 ? B SER 4 35 1 Y 1 B HIS -15 ? B HIS 5 36 1 Y 1 B HIS -14 ? B HIS 6 37 1 Y 1 B HIS -13 ? B HIS 7 38 1 Y 1 B HIS -12 ? B HIS 8 39 1 Y 1 B HIS -11 ? B HIS 9 40 1 Y 1 B HIS -10 ? B HIS 10 41 1 Y 1 B SER -9 ? B SER 11 42 1 Y 1 B SER -8 ? B SER 12 43 1 Y 1 B GLY -7 ? B GLY 13 44 1 Y 1 B LEU -6 ? B LEU 14 45 1 Y 1 B VAL -5 ? B VAL 15 46 1 Y 1 B PRO -4 ? B PRO 16 47 1 Y 1 B ARG -3 ? B ARG 17 48 1 Y 1 B GLY -2 ? B GLY 18 49 1 Y 1 B SER -1 ? B SER 19 50 1 Y 1 B HIS 0 ? B HIS 20 51 1 Y 1 B MET 1 ? B MET 21 52 1 Y 1 B SER 2 ? B SER 22 53 1 Y 1 B ASP 3 ? B ASP 23 54 1 Y 1 B ASN 4 ? B ASN 24 55 1 Y 1 B ALA 5 ? B ALA 25 56 1 Y 1 B GLN 6 ? B GLN 26 57 1 Y 1 B LEU 7 ? B LEU 27 58 1 Y 1 B GLU 213 ? B GLU 233 59 1 Y 1 B GLU 214 ? B GLU 234 60 1 Y 1 B VAL 215 ? B VAL 235 61 1 Y 1 C DC 7 ? C DC 7 62 1 Y 1 C DT 8 ? C DT 8 63 1 Y 1 C DT 9 ? C DT 9 64 1 Y 1 C DT 10 ? C DT 10 65 1 Y 1 C DA 11 ? C DA 11 66 1 Y 1 C DG 12 ? C DG 12 67 1 Y 1 D DG 1 ? D DG 1 68 1 Y 1 D DG 2 ? D DG 2 69 1 Y 1 D DC 3 ? D DC 3 70 1 Y 1 D DC 4 ? D DC 4 71 1 Y 1 D DC 5 ? D DC 5 72 1 Y 1 D DT 6 ? D DT 6 73 1 Y 1 D DC 7 ? D DC 7 74 1 Y 1 D DT 8 ? D DT 8 75 1 Y 1 D DT 9 ? D DT 9 76 1 Y 1 D DT 10 ? D DT 10 77 1 Y 1 D DA 11 ? D DA 11 78 1 Y 1 D DG 12 ? D DG 12 79 1 Y 1 D DG 13 ? D DG 13 80 1 Y 1 D DG 14 ? D DG 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CO CO CO N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DT OP3 O N N 196 DT P P N N 197 DT OP1 O N N 198 DT OP2 O N N 199 DT "O5'" O N N 200 DT "C5'" C N N 201 DT "C4'" C N R 202 DT "O4'" O N N 203 DT "C3'" C N S 204 DT "O3'" O N N 205 DT "C2'" C N N 206 DT "C1'" C N R 207 DT N1 N N N 208 DT C2 C N N 209 DT O2 O N N 210 DT N3 N N N 211 DT C4 C N N 212 DT O4 O N N 213 DT C5 C N N 214 DT C7 C N N 215 DT C6 C N N 216 DT HOP3 H N N 217 DT HOP2 H N N 218 DT "H5'" H N N 219 DT "H5''" H N N 220 DT "H4'" H N N 221 DT "H3'" H N N 222 DT "HO3'" H N N 223 DT "H2'" H N N 224 DT "H2''" H N N 225 DT "H1'" H N N 226 DT H3 H N N 227 DT H71 H N N 228 DT H72 H N N 229 DT H73 H N N 230 DT H6 H N N 231 GLN N N N N 232 GLN CA C N S 233 GLN C C N N 234 GLN O O N N 235 GLN CB C N N 236 GLN CG C N N 237 GLN CD C N N 238 GLN OE1 O N N 239 GLN NE2 N N N 240 GLN OXT O N N 241 GLN H H N N 242 GLN H2 H N N 243 GLN HA H N N 244 GLN HB2 H N N 245 GLN HB3 H N N 246 GLN HG2 H N N 247 GLN HG3 H N N 248 GLN HE21 H N N 249 GLN HE22 H N N 250 GLN HXT H N N 251 GLU N N N N 252 GLU CA C N S 253 GLU C C N N 254 GLU O O N N 255 GLU CB C N N 256 GLU CG C N N 257 GLU CD C N N 258 GLU OE1 O N N 259 GLU OE2 O N N 260 GLU OXT O N N 261 GLU H H N N 262 GLU H2 H N N 263 GLU HA H N N 264 GLU HB2 H N N 265 GLU HB3 H N N 266 GLU HG2 H N N 267 GLU HG3 H N N 268 GLU HE2 H N N 269 GLU HXT H N N 270 GLY N N N N 271 GLY CA C N N 272 GLY C C N N 273 GLY O O N N 274 GLY OXT O N N 275 GLY H H N N 276 GLY H2 H N N 277 GLY HA2 H N N 278 GLY HA3 H N N 279 GLY HXT H N N 280 HIS N N N N 281 HIS CA C N S 282 HIS C C N N 283 HIS O O N N 284 HIS CB C N N 285 HIS CG C Y N 286 HIS ND1 N Y N 287 HIS CD2 C Y N 288 HIS CE1 C Y N 289 HIS NE2 N Y N 290 HIS OXT O N N 291 HIS H H N N 292 HIS H2 H N N 293 HIS HA H N N 294 HIS HB2 H N N 295 HIS HB3 H N N 296 HIS HD1 H N N 297 HIS HD2 H N N 298 HIS HE1 H N N 299 HIS HE2 H N N 300 HIS HXT H N N 301 HOH O O N N 302 HOH H1 H N N 303 HOH H2 H N N 304 ILE N N N N 305 ILE CA C N S 306 ILE C C N N 307 ILE O O N N 308 ILE CB C N S 309 ILE CG1 C N N 310 ILE CG2 C N N 311 ILE CD1 C N N 312 ILE OXT O N N 313 ILE H H N N 314 ILE H2 H N N 315 ILE HA H N N 316 ILE HB H N N 317 ILE HG12 H N N 318 ILE HG13 H N N 319 ILE HG21 H N N 320 ILE HG22 H N N 321 ILE HG23 H N N 322 ILE HD11 H N N 323 ILE HD12 H N N 324 ILE HD13 H N N 325 ILE HXT H N N 326 LEU N N N N 327 LEU CA C N S 328 LEU C C N N 329 LEU O O N N 330 LEU CB C N N 331 LEU CG C N N 332 LEU CD1 C N N 333 LEU CD2 C N N 334 LEU OXT O N N 335 LEU H H N N 336 LEU H2 H N N 337 LEU HA H N N 338 LEU HB2 H N N 339 LEU HB3 H N N 340 LEU HG H N N 341 LEU HD11 H N N 342 LEU HD12 H N N 343 LEU HD13 H N N 344 LEU HD21 H N N 345 LEU HD22 H N N 346 LEU HD23 H N N 347 LEU HXT H N N 348 LYS N N N N 349 LYS CA C N S 350 LYS C C N N 351 LYS O O N N 352 LYS CB C N N 353 LYS CG C N N 354 LYS CD C N N 355 LYS CE C N N 356 LYS NZ N N N 357 LYS OXT O N N 358 LYS H H N N 359 LYS H2 H N N 360 LYS HA H N N 361 LYS HB2 H N N 362 LYS HB3 H N N 363 LYS HG2 H N N 364 LYS HG3 H N N 365 LYS HD2 H N N 366 LYS HD3 H N N 367 LYS HE2 H N N 368 LYS HE3 H N N 369 LYS HZ1 H N N 370 LYS HZ2 H N N 371 LYS HZ3 H N N 372 LYS HXT H N N 373 MET N N N N 374 MET CA C N S 375 MET C C N N 376 MET O O N N 377 MET CB C N N 378 MET CG C N N 379 MET SD S N N 380 MET CE C N N 381 MET OXT O N N 382 MET H H N N 383 MET H2 H N N 384 MET HA H N N 385 MET HB2 H N N 386 MET HB3 H N N 387 MET HG2 H N N 388 MET HG3 H N N 389 MET HE1 H N N 390 MET HE2 H N N 391 MET HE3 H N N 392 MET HXT H N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PRO N N N N 417 PRO CA C N S 418 PRO C C N N 419 PRO O O N N 420 PRO CB C N N 421 PRO CG C N N 422 PRO CD C N N 423 PRO OXT O N N 424 PRO H H N N 425 PRO HA H N N 426 PRO HB2 H N N 427 PRO HB3 H N N 428 PRO HG2 H N N 429 PRO HG3 H N N 430 PRO HD2 H N N 431 PRO HD3 H N N 432 PRO HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TRP N N N N 465 TRP CA C N S 466 TRP C C N N 467 TRP O O N N 468 TRP CB C N N 469 TRP CG C Y N 470 TRP CD1 C Y N 471 TRP CD2 C Y N 472 TRP NE1 N Y N 473 TRP CE2 C Y N 474 TRP CE3 C Y N 475 TRP CZ2 C Y N 476 TRP CZ3 C Y N 477 TRP CH2 C Y N 478 TRP OXT O N N 479 TRP H H N N 480 TRP H2 H N N 481 TRP HA H N N 482 TRP HB2 H N N 483 TRP HB3 H N N 484 TRP HD1 H N N 485 TRP HE1 H N N 486 TRP HE3 H N N 487 TRP HZ2 H N N 488 TRP HZ3 H N N 489 TRP HH2 H N N 490 TRP HXT H N N 491 TYR N N N N 492 TYR CA C N S 493 TYR C C N N 494 TYR O O N N 495 TYR CB C N N 496 TYR CG C Y N 497 TYR CD1 C Y N 498 TYR CD2 C Y N 499 TYR CE1 C Y N 500 TYR CE2 C Y N 501 TYR CZ C Y N 502 TYR OH O N N 503 TYR OXT O N N 504 TYR H H N N 505 TYR H2 H N N 506 TYR HA H N N 507 TYR HB2 H N N 508 TYR HB3 H N N 509 TYR HD1 H N N 510 TYR HD2 H N N 511 TYR HE1 H N N 512 TYR HE2 H N N 513 TYR HH H N N 514 TYR HXT H N N 515 VAL N N N N 516 VAL CA C N S 517 VAL C C N N 518 VAL O O N N 519 VAL CB C N N 520 VAL CG1 C N N 521 VAL CG2 C N N 522 VAL OXT O N N 523 VAL H H N N 524 VAL H2 H N N 525 VAL HA H N N 526 VAL HB H N N 527 VAL HG11 H N N 528 VAL HG12 H N N 529 VAL HG13 H N N 530 VAL HG21 H N N 531 VAL HG22 H N N 532 VAL HG23 H N N 533 VAL HXT H N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VA3 'double helix' 3VA3 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 C DT 17 1_555 4.397 -0.532 -0.438 -18.905 51.469 -99.187 1 C_DG1:DT17_C C 1 ? C 17 ? ? ? 1 C DG 2 1_555 C DC 15 1_555 0.431 0.476 0.690 23.409 -16.941 -2.183 2 C_DG2:DC15_C C 2 ? C 15 ? 19 1 1 C DC 3 1_555 C DG 14 1_555 -0.939 -0.025 0.848 -0.092 -4.524 -4.998 3 C_DC3:DG14_C C 3 ? C 14 ? 19 1 1 C DC 4 1_555 C DG 13 1_555 -0.744 -0.660 -0.190 -15.995 -26.217 -6.048 4 C_DC4:DG13_C C 4 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 C DT 17 1_555 C DG 2 1_555 C DC 15 1_555 1.621 0.835 2.996 -14.870 29.447 -31.870 -3.509 0.866 2.114 -42.099 -21.259 -45.558 1 CC_DG1DG2:DC15DT17_CC C 1 ? C 17 ? C 2 ? C 15 ? 1 C DG 2 1_555 C DC 15 1_555 C DC 3 1_555 C DG 14 1_555 0.777 -0.017 3.989 1.248 -2.375 25.992 0.755 -1.301 4.007 -5.262 -2.765 26.128 2 CC_DG2DC3:DG14DC15_CC C 2 ? C 15 ? C 3 ? C 14 ? 1 C DC 3 1_555 C DG 14 1_555 C DC 4 1_555 C DG 13 1_555 0.457 -1.033 3.641 19.113 4.863 44.003 -1.705 1.149 3.426 6.138 -24.122 48.019 3 CC_DC3DC4:DG13DG14_CC C 3 ? C 14 ? C 4 ? C 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (II) ION' CO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NGY _pdbx_initial_refinement_model.details ? #