HEADER LYASE 29-DEC-11 3VA8 TITLE CRYSTAL STRUCTURE OF ENOLASE FG03645.1 (TARGET EFI-502278) FROM TITLE 2 GIBBERELLA ZEAE PH-1 COMPLEXED WITH MAGNESIUM, FORMATE AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE; SOURCE 3 ORGANISM_TAXID: 5518; SOURCE 4 STRAIN: PH-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOLASE, MAGNESIUM BINDING SITE, LYASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 13-SEP-23 3VA8 1 REMARK LINK REVDAT 2 07-MAR-12 3VA8 1 AUTHOR JRNL REVDAT 1 01-FEB-12 3VA8 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF DEHYDRATASE FG03645.1 FROM GIBBERELLA JRNL TITL 2 ZEAE PH-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.58000 REMARK 3 B22 (A**2) : 2.58000 REMARK 3 B33 (A**2) : -3.88000 REMARK 3 B12 (A**2) : 1.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3406 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4620 ; 1.247 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;34.862 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;15.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2574 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2128 ; 3.685 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3415 ; 5.184 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 7.424 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1203 ; 9.864 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 100MM SODIUM REMARK 280 CACODYLATE, PH 6.5, 30% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.83450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.16427 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.74867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.83450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.16427 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.74867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.83450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.16427 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.74867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.83450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.16427 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.74867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.83450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.16427 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.74867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.83450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.16427 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.74867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.32853 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 109.49733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 78.32853 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 109.49733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 78.32853 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.49733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 78.32853 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.49733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 78.32853 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 109.49733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 78.32853 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 109.49733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.32853 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 109.49733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 THR A 93 REMARK 465 GLY A 94 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 96 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 89 47.86 -107.01 REMARK 500 GLU A 250 159.01 74.49 REMARK 500 MET A 269 -51.51 -134.08 REMARK 500 ASP A 292 109.05 -161.67 REMARK 500 LEU A 324 -166.57 -113.38 REMARK 500 LYS A 367 117.94 -167.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 425 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD2 REMARK 620 2 GLU A 245 OE2 90.1 REMARK 620 3 ASN A 268 OD1 170.7 85.5 REMARK 620 4 FMT A 426 O1 90.0 94.4 82.1 REMARK 620 5 FMT A 426 O2 87.3 154.2 93.0 60.0 REMARK 620 6 HOH A 428 O 91.7 113.1 97.6 152.5 92.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 426 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502278 RELATED DB: TARGETTRACK DBREF 3VA8 A -21 423 PDB 3VA8 3VA8 -21 423 SEQRES 1 A 445 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 445 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER GLN ARG SEQRES 3 A 445 SER ILE ILE LYS GLU ILE VAL ILE THR PRO VAL ALA PHE SEQRES 4 A 445 HIS ASP MET PRO LEU LEU ASN SER VAL GLY VAL HIS GLU SEQRES 5 A 445 PRO PHE ALA LEU ARG SER ILE ILE GLU ILE ILE THR GLU SEQRES 6 A 445 ASP SER TYR GLY LEU GLY GLU SER TYR GLY ASP SER ALA SEQRES 7 A 445 HIS LEU ASP ARG LEU GLN LYS ALA ALA ASP LYS ILE LYS SEQRES 8 A 445 GLY LEU SER VAL TYR SER THR ASN VAL ILE TYR GLN ARG SEQRES 9 A 445 CYS VAL GLU SER LEU ARG ASN ASP THR ASN THR GLY GLY SEQRES 10 A 445 ASP GLY MET GLY GLY MET VAL VAL THR ALA SER VAL ALA SEQRES 11 A 445 ASP LYS VAL PHE SER PRO PHE GLU VAL ALA CYS LEU ASP SEQRES 12 A 445 LEU GLN GLY LYS LEU ALA GLY ILE SER VAL SER ASP LEU SEQRES 13 A 445 LEU GLY GLY ARG VAL ARG ASP SER VAL GLN TYR SER ALA SEQRES 14 A 445 TYR LEU PHE TYR LYS TRP GLY GLY HIS PRO GLY ASP GLU SEQRES 15 A 445 ASP ASP GLU TYR GLY PRO ALA LEU ASP PRO GLU GLY VAL SEQRES 16 A 445 VAL LYS GLN ALA LYS LYS ILE ILE ASP GLU TYR GLY PHE SEQRES 17 A 445 LYS ALA ILE LYS LEU LYS GLY GLY VAL PHE PRO PRO ALA SEQRES 18 A 445 ASP GLU VAL ALA ALA ILE LYS ALA LEU HIS LYS ALA PHE SEQRES 19 A 445 PRO GLY VAL PRO LEU ARG LEU ASP PRO ASN ALA ALA TRP SEQRES 20 A 445 THR VAL GLU THR SER LYS TRP VAL ALA LYS GLU LEU GLU SEQRES 21 A 445 GLY ILE VAL GLU TYR LEU GLU ASP PRO ALA GLY GLU ILE SEQRES 22 A 445 GLU GLY MET ALA ALA VAL ALA LYS GLU ALA SER MET PRO SEQRES 23 A 445 LEU ALA THR ASN MET ALA VAL VAL ALA PHE ASP HIS LEU SEQRES 24 A 445 PRO PRO SER ILE LEU GLN ASP ALA VAL GLN VAL ILE LEU SEQRES 25 A 445 SER ASP HIS HIS PHE TRP GLY GLY LEU ARG LYS SER GLN SEQRES 26 A 445 THR LEU ALA SER ILE CYS ALA THR TRP GLY LEU ARG LEU SEQRES 27 A 445 SER MET HIS SER ASN SER HIS LEU GLY ILE SER LEU ALA SEQRES 28 A 445 ALA MET THR HIS LEU ALA SER ALA THR PRO ASN LEU ASP SEQRES 29 A 445 TYR ALA CYS ASP THR HIS TRP PRO TRP LYS ARG ARG ASP SEQRES 30 A 445 GLU ASP VAL VAL ILE GLU GLY ALA LEU LYS TRP LYS ASP SEQRES 31 A 445 GLY GLY VAL ILE VAL PRO SER GLY PRO GLY LEU GLY VAL SEQRES 32 A 445 GLU LEU ASP ARG GLU ARG LEU ALA LYS LEU HIS GLN GLN SEQRES 33 A 445 TYR VAL ASP CYS GLY LEU LYS LYS ARG ASP ASP THR THR SEQRES 34 A 445 TYR MET LYS ARG PHE LYS PRO GLU PHE SER GLU LYS ILE SEQRES 35 A 445 PRO ARG TRP HET SO4 A 424 5 HET MG A 425 1 HET FMT A 426 3 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID FORMUL 2 SO4 O4 S 2- FORMUL 3 MG MG 2+ FORMUL 4 FMT C H2 O2 FORMUL 5 HOH *262(H2 O) HELIX 1 1 ASN A -5 SER A 5 1 11 HELIX 2 2 ASP A 54 LYS A 69 1 16 HELIX 3 3 SER A 75 LEU A 87 1 13 HELIX 4 4 SER A 106 GLY A 128 1 23 HELIX 5 5 SER A 130 LEU A 135 1 6 HELIX 6 6 ASP A 169 GLY A 185 1 17 HELIX 7 7 PRO A 197 PHE A 212 1 16 HELIX 8 8 THR A 226 LEU A 237 1 12 HELIX 9 9 GLY A 249 LYS A 259 1 11 HELIX 10 10 ALA A 273 ASP A 275 5 3 HELIX 11 11 HIS A 276 GLN A 283 1 8 HELIX 12 12 ASP A 292 GLY A 297 1 6 HELIX 13 13 GLY A 298 GLY A 313 1 16 HELIX 14 14 LEU A 324 ALA A 337 1 14 HELIX 15 15 HIS A 348 LYS A 352 5 5 HELIX 16 16 ASP A 384 GLY A 399 1 16 HELIX 17 17 ASP A 404 ARG A 411 1 8 SHEET 1 A 3 GLU A 9 HIS A 18 0 SHEET 2 A 3 PHE A 32 ILE A 41 -1 O ILE A 41 N GLU A 9 SHEET 3 A 3 TYR A 46 TYR A 52 -1 O GLY A 47 N ILE A 40 SHEET 1 B 2 LEU A 23 ASN A 24 0 SHEET 2 B 2 GLY A 27 VAL A 28 -1 O GLY A 27 N ASN A 24 SHEET 1 C 3 SER A 142 GLN A 144 0 SHEET 2 C 3 GLY A 370 ILE A 372 -1 O VAL A 371 N VAL A 143 SHEET 3 C 3 TRP A 366 LYS A 367 -1 N LYS A 367 O GLY A 370 SHEET 1 D 7 ALA A 147 PHE A 150 0 SHEET 2 D 7 ILE A 189 LYS A 192 1 O LYS A 190 N LEU A 149 SHEET 3 D 7 LEU A 217 ASP A 220 1 O ARG A 218 N LEU A 191 SHEET 4 D 7 TYR A 243 GLU A 245 1 O GLU A 245 N LEU A 219 SHEET 5 D 7 LEU A 265 THR A 267 1 O ALA A 266 N LEU A 244 SHEET 6 D 7 VAL A 288 SER A 291 1 O LEU A 290 N THR A 267 SHEET 7 D 7 ARG A 315 MET A 318 1 O ARG A 315 N ILE A 289 LINK OD2 ASP A 220 MG MG A 425 1555 1555 2.04 LINK OE2 GLU A 245 MG MG A 425 1555 1555 1.81 LINK OD1 ASN A 268 MG MG A 425 1555 1555 2.05 LINK MG MG A 425 O1 FMT A 426 1555 1555 2.19 LINK MG MG A 425 O2 FMT A 426 1555 1555 2.25 LINK MG MG A 425 O HOH A 428 1555 1555 2.01 CISPEP 1 ILE A 420 PRO A 421 0 -0.79 SITE 1 AC1 11 ASN A 24 HIS A 29 MET A 101 LYS A 192 SITE 2 AC1 11 ASN A 321 HIS A 348 ARG A 403 HOH A 479 SITE 3 AC1 11 HOH A 508 HOH A 529 HOH A 593 SITE 1 AC2 5 ASP A 220 GLU A 245 ASN A 268 FMT A 426 SITE 2 AC2 5 HOH A 428 SITE 1 AC3 12 TYR A 148 LYS A 190 LYS A 192 ASP A 220 SITE 2 AC3 12 ASN A 222 GLU A 245 ASN A 268 HIS A 319 SITE 3 AC3 12 MG A 425 HOH A 428 HOH A 529 HOH A 548 CRYST1 135.669 135.669 164.246 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007371 0.004256 0.000000 0.00000 SCALE2 0.000000 0.008511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006088 0.00000