HEADER LYASE 05-JAN-12 3VDG TITLE CRYSTAL STRUCTURE OF ENOLASE MSMEG_6132 (TARGET EFI-502282) FROM TITLE 2 MYCOBACTERIUM SMEGMATIS STR. MC2 155 COMPLEXED WITH FORMATE AND TITLE 3 ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GLUCARATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_6132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS ENOLASE, MAGNESIUM BINDING SITE, LYASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 13-SEP-23 3VDG 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 3VDG 1 AUTHOR REVDAT 2 07-MAR-12 3VDG 1 AUTHOR JRNL REVDAT 1 25-JAN-12 3VDG 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ENOLASE MSMEG_6132 FROM MYCOBACTERIUM JRNL TITL 2 SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 53507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3510 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3311 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4539 ; 1.226 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 5.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.140 ;23.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;12.390 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2610 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62963 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M MALONIC ACID, 0.15 M AMMONIUM REMARK 280 CITRATE TRIBASIC, 0.072 M SUCCINIC ACID, 0.18 M DL-MALIC ACID, REMARK 280 0.24 M SODIUM ACETATE, 0.3 M SODIUM FORMATE, 0.096 M AMMONIUM REMARK 280 TARTRATE DIBASIC, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.58400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 173.16800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.87600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 216.46000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.29200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.58400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 173.16800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 216.46000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 129.87600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.29200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.29200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 762 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 58.75 -94.92 REMARK 500 ARG A 93 155.84 171.04 REMARK 500 ASP A 248 59.62 37.94 REMARK 500 MET A 271 -42.42 -130.09 REMARK 500 ASP A 294 107.29 -160.99 REMARK 500 LEU A 326 -161.26 -116.01 REMARK 500 HIS A 355 17.97 -144.40 REMARK 500 ASP A 404 75.77 -154.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD2 REMARK 620 2 GLU A 247 OE2 90.9 REMARK 620 3 ASN A 270 OD1 162.0 106.6 REMARK 620 4 HOH A 603 O 77.5 120.2 90.2 REMARK 620 5 HOH A 767 O 79.9 123.8 92.9 111.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502282 RELATED DB: TARGETTRACK DBREF 3VDG A 1 423 UNP A0R5B5 A0R5B5_MYCS2 1 423 SEQADV 3VDG MET A -21 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -20 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -19 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -18 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -17 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -16 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG HIS A -15 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG SER A -14 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG SER A -13 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG GLY A -12 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG VAL A -11 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG ASP A -10 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG LEU A -9 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG GLY A -8 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG THR A -7 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG GLU A -6 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG ASN A -5 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG LEU A -4 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG TYR A -3 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG PHE A -2 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG GLN A -1 UNP A0R5B5 EXPRESSION TAG SEQADV 3VDG SER A 0 UNP A0R5B5 EXPRESSION TAG SEQRES 1 A 445 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 445 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA HIS ASN SEQRES 3 A 445 ARG ILE ARG ILE THR GLY ALA ARG VAL THR PRO VAL ALA SEQRES 4 A 445 PHE ALA ASP PRO PRO LEU LEU ASN THR VAL GLY VAL HIS SEQRES 5 A 445 GLN PRO TYR ALA LEU ARG ALA VAL ILE GLN LEU ASP THR SEQRES 6 A 445 ASP ALA GLY LEU THR GLY LEU GLY GLU THR TYR ALA ASP SEQRES 7 A 445 THR VAL HIS LEU GLU ARG LEU GLN ALA ALA ALA HIS ALA SEQRES 8 A 445 ILE VAL GLY ARG SER VAL PHE SER THR ASN VAL ILE ARG SEQRES 9 A 445 ALA LEU ILE SER ASP ALA LEU GLY GLY ASP ARG THR GLY SEQRES 10 A 445 ASP GLY SER GLY LEU ALA GLY MET ILE THR SER ALA SER SEQRES 11 A 445 VAL VAL ASP ARG VAL PHE SER PRO PHE GLU VAL ALA CYS SEQRES 12 A 445 LEU ASP VAL GLN GLY GLN VAL THR GLY ARG PRO VAL SER SEQRES 13 A 445 ASP LEU LEU GLY GLY ALA VAL ARG ASP ALA VAL PRO PHE SEQRES 14 A 445 SER ALA TYR LEU PHE TYR LYS TRP ALA ALA HIS PRO GLY SEQRES 15 A 445 ALA GLU PRO ASP GLY TRP GLY ALA ALA LEU ASP PRO ASP SEQRES 16 A 445 GLY ILE VAL ALA GLN ALA ARG ARG MET ILE ASP GLU TYR SEQRES 17 A 445 GLY PHE SER ALA ILE LYS LEU LYS GLY GLY VAL PHE ALA SEQRES 18 A 445 PRO GLU GLU GLU MET ALA ALA VAL GLU ALA LEU ARG ALA SEQRES 19 A 445 ALA PHE PRO ASP HIS PRO LEU ARG LEU ASP PRO ASN ALA SEQRES 20 A 445 ALA TRP THR PRO GLN THR SER VAL LYS VAL ALA ALA GLY SEQRES 21 A 445 LEU GLU GLY VAL LEU GLU TYR LEU GLU ASP PRO THR PRO SEQRES 22 A 445 GLY LEU ASP GLY MET ALA GLU VAL ALA ALA GLN ALA PRO SEQRES 23 A 445 MET PRO LEU ALA THR ASN MET CYS VAL VAL ALA PHE ASP SEQRES 24 A 445 GLN LEU PRO ALA ALA VAL ALA LYS ASN SER VAL GLN VAL SEQRES 25 A 445 VAL LEU SER ASP HIS HIS TYR TRP GLY GLY LEU GLN ARG SEQRES 26 A 445 SER ARG LEU LEU ALA GLY ILE CYS ASP THR PHE GLY LEU SEQRES 27 A 445 GLY LEU SER MET HIS SER ASN SER HIS LEU GLY ILE SER SEQRES 28 A 445 LEU ALA ALA MET VAL HIS LEU ALA ALA ALA THR PRO ASN SEQRES 29 A 445 LEU THR TYR ALA CYS ASP THR HIS TRP PRO TRP ARG HIS SEQRES 30 A 445 GLU ASP VAL VAL ALA PRO GLY ALA LEU ASN PHE CYS ASP SEQRES 31 A 445 GLY GLU VAL GLN VAL PRO ALA THR PRO GLY LEU GLY VAL SEQRES 32 A 445 GLU ILE ASP GLU ASP ALA LEU ALA ALA LEU HIS GLU GLN SEQRES 33 A 445 TYR LEU ARG CYS GLY ILE ARG ASP ARG ASP ASP THR GLY SEQRES 34 A 445 TYR MET ARG SER ILE ASP PRO GLY PHE ASN ALA SER GLY SEQRES 35 A 445 PRO ARG TRP HET FMT A 501 3 HET NA A 502 1 HET CL A 503 1 HET ACT A 504 4 HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 2 FMT C H2 O2 FORMUL 3 NA NA 1+ FORMUL 4 CL CL 1- FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *403(H2 O) HELIX 1 1 MET A 1 ARG A 5 5 5 HELIX 2 2 ASP A 56 VAL A 71 1 16 HELIX 3 3 SER A 77 GLY A 90 1 14 HELIX 4 4 SER A 108 GLY A 130 1 23 HELIX 5 5 PRO A 132 LEU A 137 5 6 HELIX 6 6 ASP A 171 GLY A 187 1 17 HELIX 7 7 ALA A 199 PHE A 214 1 16 HELIX 8 8 THR A 228 LEU A 239 1 12 HELIX 9 9 GLY A 252 ALA A 263 1 12 HELIX 10 10 ALA A 275 ASP A 277 5 3 HELIX 11 11 GLN A 278 ASN A 286 1 9 HELIX 12 12 ASP A 294 GLY A 299 1 6 HELIX 13 13 GLY A 300 GLY A 315 1 16 HELIX 14 14 LEU A 326 ALA A 339 1 14 HELIX 15 15 HIS A 350 ARG A 354 5 5 HELIX 16 16 ASP A 384 GLY A 399 1 16 HELIX 17 17 ASP A 404 ASP A 413 1 10 SHEET 1 A 3 ILE A 8 ALA A 19 0 SHEET 2 A 3 TYR A 33 THR A 43 -1 O ARG A 36 N VAL A 16 SHEET 3 A 3 THR A 48 THR A 53 -1 O GLY A 49 N LEU A 41 SHEET 1 B 2 LEU A 24 ASN A 25 0 SHEET 2 B 2 GLY A 28 VAL A 29 -1 O GLY A 28 N ASN A 25 SHEET 1 C 3 ALA A 144 PRO A 146 0 SHEET 2 C 3 GLU A 370 GLN A 372 -1 O VAL A 371 N VAL A 145 SHEET 3 C 3 PHE A 366 CYS A 367 -1 N CYS A 367 O GLU A 370 SHEET 1 D 7 ALA A 149 PHE A 152 0 SHEET 2 D 7 ILE A 191 LYS A 194 1 O LYS A 192 N ALA A 149 SHEET 3 D 7 LEU A 219 ASP A 222 1 O ARG A 220 N LEU A 193 SHEET 4 D 7 TYR A 245 GLU A 247 1 O GLU A 247 N LEU A 221 SHEET 5 D 7 LEU A 267 THR A 269 1 O ALA A 268 N LEU A 246 SHEET 6 D 7 VAL A 290 SER A 293 1 O LEU A 292 N THR A 269 SHEET 7 D 7 GLY A 317 MET A 320 1 O SER A 319 N SER A 293 LINK OD2 ASP A 222 NA NA A 502 1555 1555 2.44 LINK OE2 GLU A 247 NA NA A 502 1555 1555 2.21 LINK OD1 ASN A 270 NA NA A 502 1555 1555 2.20 LINK NA NA A 502 O HOH A 603 1555 1555 2.37 LINK NA NA A 502 O HOH A 767 1555 1555 2.29 CISPEP 1 GLY A 420 PRO A 421 0 -2.87 SITE 1 AC1 11 LYS A 194 ASN A 224 ASN A 270 HIS A 321 SITE 2 AC1 11 ASN A 323 NA A 502 ACT A 504 HOH A 726 SITE 3 AC1 11 HOH A 767 HOH A 770 HOH A 779 SITE 1 AC2 7 LYS A 192 ASP A 222 GLU A 247 ASN A 270 SITE 2 AC2 7 FMT A 501 HOH A 603 HOH A 767 SITE 1 AC3 5 ARG A 5 ARG A 73 SER A 74 GLY A 415 SITE 2 AC3 5 HOH A 950 SITE 1 AC4 9 ASN A 25 HIS A 30 LYS A 194 HIS A 350 SITE 2 AC4 9 ARG A 403 FMT A 501 HOH A 726 HOH A 769 SITE 3 AC4 9 HOH A 779 CRYST1 94.949 94.949 259.752 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010532 0.006081 0.000000 0.00000 SCALE2 0.000000 0.012161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003850 0.00000