data_3VEB # _entry.id 3VEB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VEB pdb_00003veb 10.2210/pdb3veb/pdb NDB NA1545 ? ? RCSB RCSB069937 ? ? WWPDB D_1000069937 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VEB _pdbx_database_status.recvd_initial_deposition_date 2012-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3VEA . unspecified PDB 4D8J . unspecified # _audit_author.name 'Schumacher, M.A.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 48 _citation.page_first 560 _citation.page_last 571 _citation.year 2012 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23084832 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.09.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dupaigne, P.' 1 ? primary 'Tonthat, N.K.' 2 ? primary 'Espeli, O.' 3 ? primary 'Whitfill, T.' 4 ? primary 'Boccard, F.' 5 ? primary 'Schumacher, M.A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Macrodomain Ter protein' 17967.588 2 ? ? ? ? 2 polymer syn "5'-D(*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*G)-3'" 4889.177 1 ? ? ? 'matS strand 2' 3 polymer syn "5'-D(*AP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*G)-3'" 4907.205 1 ? ? ? 'matS strand 1' 4 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Matp # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKYQQLENLESGWKWAYLVKKHREGEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKR HFNAEHQHTRKKSIDLEFLVWQRLAVLARRRGNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDILDKEV ; ;MKYQQLENLESGWKWAYLVKKHREGEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKR HFNAEHQHTRKKSIDLEFLVWQRLAVLARRRGNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDILDKEV ; B,A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DT)(DG)(DA)(DC)(DA)(DT)(DT)(DG)(DT)(DC)(DA)(DC)(DG)' TCGTGACATTGTCACG N ? 3 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DG)(DA)(DC)(DA)(DA)(DT)(DG)(DT)(DC)(DA)(DC)(DG)' ACGTGACAATGTCACG M ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 TYR n 1 4 GLN n 1 5 GLN n 1 6 LEU n 1 7 GLU n 1 8 ASN n 1 9 LEU n 1 10 GLU n 1 11 SER n 1 12 GLY n 1 13 TRP n 1 14 LYS n 1 15 TRP n 1 16 ALA n 1 17 TYR n 1 18 LEU n 1 19 VAL n 1 20 LYS n 1 21 LYS n 1 22 HIS n 1 23 ARG n 1 24 GLU n 1 25 GLY n 1 26 GLU n 1 27 ALA n 1 28 ILE n 1 29 THR n 1 30 ARG n 1 31 HIS n 1 32 ILE n 1 33 GLU n 1 34 ASN n 1 35 SER n 1 36 ALA n 1 37 ALA n 1 38 GLN n 1 39 ASP n 1 40 ALA n 1 41 VAL n 1 42 GLU n 1 43 GLN n 1 44 LEU n 1 45 MET n 1 46 LYS n 1 47 LEU n 1 48 GLU n 1 49 ASN n 1 50 GLU n 1 51 PRO n 1 52 VAL n 1 53 LYS n 1 54 VAL n 1 55 GLN n 1 56 GLU n 1 57 TRP n 1 58 ILE n 1 59 ASP n 1 60 ALA n 1 61 HIS n 1 62 MET n 1 63 ASN n 1 64 VAL n 1 65 ASN n 1 66 LEU n 1 67 ALA n 1 68 THR n 1 69 ARG n 1 70 MET n 1 71 LYS n 1 72 GLN n 1 73 THR n 1 74 ILE n 1 75 ARG n 1 76 ALA n 1 77 ARG n 1 78 ARG n 1 79 LYS n 1 80 ARG n 1 81 HIS n 1 82 PHE n 1 83 ASN n 1 84 ALA n 1 85 GLU n 1 86 HIS n 1 87 GLN n 1 88 HIS n 1 89 THR n 1 90 ARG n 1 91 LYS n 1 92 LYS n 1 93 SER n 1 94 ILE n 1 95 ASP n 1 96 LEU n 1 97 GLU n 1 98 PHE n 1 99 LEU n 1 100 VAL n 1 101 TRP n 1 102 GLN n 1 103 ARG n 1 104 LEU n 1 105 ALA n 1 106 VAL n 1 107 LEU n 1 108 ALA n 1 109 ARG n 1 110 ARG n 1 111 ARG n 1 112 GLY n 1 113 ASN n 1 114 THR n 1 115 LEU n 1 116 SER n 1 117 ASP n 1 118 THR n 1 119 VAL n 1 120 VAL n 1 121 GLN n 1 122 LEU n 1 123 ILE n 1 124 GLU n 1 125 ASP n 1 126 ALA n 1 127 GLU n 1 128 ARG n 1 129 LYS n 1 130 GLU n 1 131 LYS n 1 132 TYR n 1 133 ALA n 1 134 SER n 1 135 GLN n 1 136 MET n 1 137 SER n 1 138 SER n 1 139 LEU n 1 140 LYS n 1 141 GLN n 1 142 ASP n 1 143 LEU n 1 144 LYS n 1 145 ASP n 1 146 ILE n 1 147 LEU n 1 148 ASP n 1 149 LYS n 1 150 GLU n 1 151 VAL n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DC n 2 16 DG n 3 1 DA n 3 2 DC n 3 3 DG n 3 4 DT n 3 5 DG n 3 6 DA n 3 7 DC n 3 8 DA n 3 9 DA n 3 10 DT n 3 11 DG n 3 12 DT n 3 13 DC n 3 14 DA n 3 15 DC n 3 16 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'matP, YPO1433, y2737, YP_0877' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pestis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 632 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 14 14 MET MET B . n A 1 2 LYS 2 15 15 LYS LYS B . n A 1 3 TYR 3 16 16 TYR TYR B . n A 1 4 GLN 4 17 17 GLN GLN B . n A 1 5 GLN 5 18 18 GLN GLN B . n A 1 6 LEU 6 19 19 LEU LEU B . n A 1 7 GLU 7 20 20 GLU GLU B . n A 1 8 ASN 8 21 21 ASN ASN B . n A 1 9 LEU 9 22 22 LEU LEU B . n A 1 10 GLU 10 23 23 GLU GLU B . n A 1 11 SER 11 24 24 SER SER B . n A 1 12 GLY 12 25 25 GLY GLY B . n A 1 13 TRP 13 26 26 TRP TRP B . n A 1 14 LYS 14 27 27 LYS LYS B . n A 1 15 TRP 15 28 28 TRP TRP B . n A 1 16 ALA 16 29 29 ALA ALA B . n A 1 17 TYR 17 30 30 TYR TYR B . n A 1 18 LEU 18 31 31 LEU LEU B . n A 1 19 VAL 19 32 32 VAL VAL B . n A 1 20 LYS 20 33 33 LYS LYS B . n A 1 21 LYS 21 34 34 LYS LYS B . n A 1 22 HIS 22 35 35 HIS HIS B . n A 1 23 ARG 23 36 36 ARG ARG B . n A 1 24 GLU 24 37 37 GLU GLU B . n A 1 25 GLY 25 38 38 GLY GLY B . n A 1 26 GLU 26 39 39 GLU GLU B . n A 1 27 ALA 27 40 40 ALA ALA B . n A 1 28 ILE 28 41 41 ILE ILE B . n A 1 29 THR 29 42 42 THR THR B . n A 1 30 ARG 30 43 43 ARG ARG B . n A 1 31 HIS 31 44 44 HIS HIS B . n A 1 32 ILE 32 45 45 ILE ILE B . n A 1 33 GLU 33 46 46 GLU GLU B . n A 1 34 ASN 34 47 47 ASN ASN B . n A 1 35 SER 35 48 48 SER SER B . n A 1 36 ALA 36 49 49 ALA ALA B . n A 1 37 ALA 37 50 50 ALA ALA B . n A 1 38 GLN 38 51 51 GLN GLN B . n A 1 39 ASP 39 52 52 ASP ASP B . n A 1 40 ALA 40 53 53 ALA ALA B . n A 1 41 VAL 41 54 54 VAL VAL B . n A 1 42 GLU 42 55 55 GLU GLU B . n A 1 43 GLN 43 56 56 GLN GLN B . n A 1 44 LEU 44 57 57 LEU LEU B . n A 1 45 MET 45 58 58 MET MET B . n A 1 46 LYS 46 59 59 LYS LYS B . n A 1 47 LEU 47 60 60 LEU LEU B . n A 1 48 GLU 48 61 61 GLU GLU B . n A 1 49 ASN 49 62 62 ASN ASN B . n A 1 50 GLU 50 63 63 GLU GLU B . n A 1 51 PRO 51 64 64 PRO PRO B . n A 1 52 VAL 52 65 65 VAL VAL B . n A 1 53 LYS 53 66 66 LYS LYS B . n A 1 54 VAL 54 67 67 VAL VAL B . n A 1 55 GLN 55 68 68 GLN GLN B . n A 1 56 GLU 56 69 69 GLU GLU B . n A 1 57 TRP 57 70 70 TRP TRP B . n A 1 58 ILE 58 71 71 ILE ILE B . n A 1 59 ASP 59 72 72 ASP ASP B . n A 1 60 ALA 60 73 73 ALA ALA B . n A 1 61 HIS 61 74 74 HIS HIS B . n A 1 62 MET 62 75 75 MET MET B . n A 1 63 ASN 63 76 76 ASN ASN B . n A 1 64 VAL 64 77 77 VAL VAL B . n A 1 65 ASN 65 78 78 ASN ASN B . n A 1 66 LEU 66 79 79 LEU LEU B . n A 1 67 ALA 67 80 80 ALA ALA B . n A 1 68 THR 68 81 81 THR THR B . n A 1 69 ARG 69 82 82 ARG ARG B . n A 1 70 MET 70 83 83 MET MET B . n A 1 71 LYS 71 84 84 LYS LYS B . n A 1 72 GLN 72 85 85 GLN GLN B . n A 1 73 THR 73 86 86 THR THR B . n A 1 74 ILE 74 87 87 ILE ILE B . n A 1 75 ARG 75 88 88 ARG ARG B . n A 1 76 ALA 76 89 89 ALA ALA B . n A 1 77 ARG 77 90 90 ARG ARG B . n A 1 78 ARG 78 91 91 ARG ARG B . n A 1 79 LYS 79 92 92 LYS LYS B . n A 1 80 ARG 80 93 93 ARG ARG B . n A 1 81 HIS 81 94 94 HIS HIS B . n A 1 82 PHE 82 95 95 PHE PHE B . n A 1 83 ASN 83 96 96 ASN ASN B . n A 1 84 ALA 84 97 97 ALA ALA B . n A 1 85 GLU 85 98 98 GLU GLU B . n A 1 86 HIS 86 99 99 HIS HIS B . n A 1 87 GLN 87 100 100 GLN GLN B . n A 1 88 HIS 88 101 101 HIS HIS B . n A 1 89 THR 89 102 102 THR THR B . n A 1 90 ARG 90 103 103 ARG ARG B . n A 1 91 LYS 91 104 104 LYS LYS B . n A 1 92 LYS 92 105 105 LYS LYS B . n A 1 93 SER 93 106 106 SER SER B . n A 1 94 ILE 94 107 107 ILE ILE B . n A 1 95 ASP 95 108 108 ASP ASP B . n A 1 96 LEU 96 109 109 LEU LEU B . n A 1 97 GLU 97 110 110 GLU GLU B . n A 1 98 PHE 98 111 111 PHE PHE B . n A 1 99 LEU 99 112 112 LEU LEU B . n A 1 100 VAL 100 113 113 VAL VAL B . n A 1 101 TRP 101 114 114 TRP TRP B . n A 1 102 GLN 102 115 115 GLN GLN B . n A 1 103 ARG 103 116 116 ARG ARG B . n A 1 104 LEU 104 117 117 LEU LEU B . n A 1 105 ALA 105 118 118 ALA ALA B . n A 1 106 VAL 106 119 119 VAL VAL B . n A 1 107 LEU 107 120 120 LEU LEU B . n A 1 108 ALA 108 121 121 ALA ALA B . n A 1 109 ARG 109 122 122 ARG ARG B . n A 1 110 ARG 110 123 123 ARG ARG B . n A 1 111 ARG 111 124 124 ARG ARG B . n A 1 112 GLY 112 125 125 GLY GLY B . n A 1 113 ASN 113 126 126 ASN ASN B . n A 1 114 THR 114 127 127 THR THR B . n A 1 115 LEU 115 128 128 LEU LEU B . n A 1 116 SER 116 129 129 SER SER B . n A 1 117 ASP 117 130 130 ASP ASP B . n A 1 118 THR 118 131 131 THR THR B . n A 1 119 VAL 119 132 132 VAL VAL B . n A 1 120 VAL 120 133 133 VAL VAL B . n A 1 121 GLN 121 134 134 GLN GLN B . n A 1 122 LEU 122 135 135 LEU LEU B . n A 1 123 ILE 123 136 136 ILE ILE B . n A 1 124 GLU 124 137 137 GLU GLU B . n A 1 125 ASP 125 138 138 ASP ASP B . n A 1 126 ALA 126 139 139 ALA ALA B . n A 1 127 GLU 127 140 140 GLU GLU B . n A 1 128 ARG 128 141 141 ARG ARG B . n A 1 129 LYS 129 142 142 LYS LYS B . n A 1 130 GLU 130 143 143 GLU GLU B . n A 1 131 LYS 131 144 144 LYS LYS B . n A 1 132 TYR 132 145 145 TYR TYR B . n A 1 133 ALA 133 146 146 ALA ALA B . n A 1 134 SER 134 147 147 SER SER B . n A 1 135 GLN 135 148 148 GLN GLN B . n A 1 136 MET 136 149 149 MET MET B . n A 1 137 SER 137 150 150 SER SER B . n A 1 138 SER 138 151 151 SER SER B . n A 1 139 LEU 139 152 152 LEU LEU B . n A 1 140 LYS 140 153 153 LYS LYS B . n A 1 141 GLN 141 154 154 GLN GLN B . n A 1 142 ASP 142 155 155 ASP ASP B . n A 1 143 LEU 143 156 156 LEU LEU B . n A 1 144 LYS 144 157 157 LYS LYS B . n A 1 145 ASP 145 158 158 ASP ASP B . n A 1 146 ILE 146 159 159 ILE ILE B . n A 1 147 LEU 147 160 160 LEU LEU B . n A 1 148 ASP 148 161 161 ASP ASP B . n A 1 149 LYS 149 162 162 LYS LYS B . n A 1 150 GLU 150 163 163 GLU GLU B . n A 1 151 VAL 151 164 ? ? ? B . n B 2 1 DT 1 1 1 DT THY N . n B 2 2 DC 2 2 2 DC CYT N . n B 2 3 DG 3 3 3 DG GUA N . n B 2 4 DT 4 4 4 DT THY N . n B 2 5 DG 5 5 5 DG GUA N . n B 2 6 DA 6 6 6 DA ADE N . n B 2 7 DC 7 7 7 DC CYT N . n B 2 8 DA 8 8 8 DA ADE N . n B 2 9 DT 9 9 9 DT THY N . n B 2 10 DT 10 10 10 DT THY N . n B 2 11 DG 11 11 11 DG GUA N . n B 2 12 DT 12 12 12 DT THY N . n B 2 13 DC 13 13 13 DC CYT N . n B 2 14 DA 14 14 14 DA ADE N . n B 2 15 DC 15 15 15 DC CYT N . n B 2 16 DG 16 16 16 DG GUA N . n C 3 1 DA 1 1 1 DA ADE M . n C 3 2 DC 2 2 2 DC CYT M . n C 3 3 DG 3 3 3 DG GUA M . n C 3 4 DT 4 4 4 DT THY M . n C 3 5 DG 5 5 5 DG GUA M . n C 3 6 DA 6 6 6 DA ADE M . n C 3 7 DC 7 7 7 DC CYT M . n C 3 8 DA 8 8 8 DA ADE M . n C 3 9 DA 9 9 9 DA ADE M . n C 3 10 DT 10 10 10 DT THY M . n C 3 11 DG 11 11 11 DG GUA M . n C 3 12 DT 12 12 12 DT THY M . n C 3 13 DC 13 13 13 DC CYT M . n C 3 14 DA 14 14 14 DA ADE M . n C 3 15 DC 15 15 15 DC CYT M . n C 3 16 DG 16 16 16 DG GUA M . n D 1 1 MET 1 14 ? ? ? A . n D 1 2 LYS 2 15 15 LYS LYS A . n D 1 3 TYR 3 16 16 TYR TYR A . n D 1 4 GLN 4 17 17 GLN GLN A . n D 1 5 GLN 5 18 18 GLN GLN A . n D 1 6 LEU 6 19 19 LEU LEU A . n D 1 7 GLU 7 20 20 GLU GLU A . n D 1 8 ASN 8 21 21 ASN ASN A . n D 1 9 LEU 9 22 22 LEU LEU A . n D 1 10 GLU 10 23 23 GLU GLU A . n D 1 11 SER 11 24 24 SER SER A . n D 1 12 GLY 12 25 25 GLY GLY A . n D 1 13 TRP 13 26 26 TRP TRP A . n D 1 14 LYS 14 27 27 LYS LYS A . n D 1 15 TRP 15 28 28 TRP TRP A . n D 1 16 ALA 16 29 29 ALA ALA A . n D 1 17 TYR 17 30 30 TYR TYR A . n D 1 18 LEU 18 31 31 LEU LEU A . n D 1 19 VAL 19 32 32 VAL VAL A . n D 1 20 LYS 20 33 33 LYS LYS A . n D 1 21 LYS 21 34 34 LYS LYS A . n D 1 22 HIS 22 35 35 HIS HIS A . n D 1 23 ARG 23 36 36 ARG ARG A . n D 1 24 GLU 24 37 37 GLU GLU A . n D 1 25 GLY 25 38 38 GLY GLY A . n D 1 26 GLU 26 39 39 GLU GLU A . n D 1 27 ALA 27 40 40 ALA ALA A . n D 1 28 ILE 28 41 41 ILE ILE A . n D 1 29 THR 29 42 42 THR THR A . n D 1 30 ARG 30 43 43 ARG ARG A . n D 1 31 HIS 31 44 44 HIS HIS A . n D 1 32 ILE 32 45 45 ILE ILE A . n D 1 33 GLU 33 46 46 GLU GLU A . n D 1 34 ASN 34 47 47 ASN ASN A . n D 1 35 SER 35 48 48 SER SER A . n D 1 36 ALA 36 49 49 ALA ALA A . n D 1 37 ALA 37 50 50 ALA ALA A . n D 1 38 GLN 38 51 51 GLN GLN A . n D 1 39 ASP 39 52 52 ASP ASP A . n D 1 40 ALA 40 53 53 ALA ALA A . n D 1 41 VAL 41 54 54 VAL VAL A . n D 1 42 GLU 42 55 55 GLU GLU A . n D 1 43 GLN 43 56 56 GLN GLN A . n D 1 44 LEU 44 57 57 LEU LEU A . n D 1 45 MET 45 58 58 MET MET A . n D 1 46 LYS 46 59 59 LYS LYS A . n D 1 47 LEU 47 60 60 LEU LEU A . n D 1 48 GLU 48 61 61 GLU GLU A . n D 1 49 ASN 49 62 62 ASN ASN A . n D 1 50 GLU 50 63 63 GLU GLU A . n D 1 51 PRO 51 64 64 PRO PRO A . n D 1 52 VAL 52 65 65 VAL VAL A . n D 1 53 LYS 53 66 66 LYS LYS A . n D 1 54 VAL 54 67 67 VAL VAL A . n D 1 55 GLN 55 68 68 GLN GLN A . n D 1 56 GLU 56 69 69 GLU GLU A . n D 1 57 TRP 57 70 70 TRP TRP A . n D 1 58 ILE 58 71 71 ILE ILE A . n D 1 59 ASP 59 72 72 ASP ASP A . n D 1 60 ALA 60 73 73 ALA ALA A . n D 1 61 HIS 61 74 74 HIS HIS A . n D 1 62 MET 62 75 75 MET MET A . n D 1 63 ASN 63 76 76 ASN ASN A . n D 1 64 VAL 64 77 77 VAL VAL A . n D 1 65 ASN 65 78 78 ASN ASN A . n D 1 66 LEU 66 79 79 LEU LEU A . n D 1 67 ALA 67 80 80 ALA ALA A . n D 1 68 THR 68 81 81 THR THR A . n D 1 69 ARG 69 82 82 ARG ARG A . n D 1 70 MET 70 83 83 MET MET A . n D 1 71 LYS 71 84 84 LYS LYS A . n D 1 72 GLN 72 85 85 GLN GLN A . n D 1 73 THR 73 86 86 THR THR A . n D 1 74 ILE 74 87 87 ILE ILE A . n D 1 75 ARG 75 88 88 ARG ARG A . n D 1 76 ALA 76 89 89 ALA ALA A . n D 1 77 ARG 77 90 90 ARG ARG A . n D 1 78 ARG 78 91 91 ARG ARG A . n D 1 79 LYS 79 92 92 LYS LYS A . n D 1 80 ARG 80 93 93 ARG ARG A . n D 1 81 HIS 81 94 94 HIS HIS A . n D 1 82 PHE 82 95 95 PHE PHE A . n D 1 83 ASN 83 96 96 ASN ASN A . n D 1 84 ALA 84 97 97 ALA ALA A . n D 1 85 GLU 85 98 98 GLU GLU A . n D 1 86 HIS 86 99 99 HIS HIS A . n D 1 87 GLN 87 100 100 GLN GLN A . n D 1 88 HIS 88 101 101 HIS HIS A . n D 1 89 THR 89 102 102 THR THR A . n D 1 90 ARG 90 103 103 ARG ARG A . n D 1 91 LYS 91 104 104 LYS LYS A . n D 1 92 LYS 92 105 105 LYS LYS A . n D 1 93 SER 93 106 106 SER SER A . n D 1 94 ILE 94 107 107 ILE ILE A . n D 1 95 ASP 95 108 108 ASP ASP A . n D 1 96 LEU 96 109 109 LEU LEU A . n D 1 97 GLU 97 110 110 GLU GLU A . n D 1 98 PHE 98 111 111 PHE PHE A . n D 1 99 LEU 99 112 112 LEU LEU A . n D 1 100 VAL 100 113 113 VAL VAL A . n D 1 101 TRP 101 114 114 TRP TRP A . n D 1 102 GLN 102 115 115 GLN GLN A . n D 1 103 ARG 103 116 116 ARG ARG A . n D 1 104 LEU 104 117 117 LEU LEU A . n D 1 105 ALA 105 118 118 ALA ALA A . n D 1 106 VAL 106 119 119 VAL VAL A . n D 1 107 LEU 107 120 120 LEU LEU A . n D 1 108 ALA 108 121 121 ALA ALA A . n D 1 109 ARG 109 122 122 ARG ARG A . n D 1 110 ARG 110 123 123 ARG ARG A . n D 1 111 ARG 111 124 124 ARG ARG A . n D 1 112 GLY 112 125 125 GLY GLY A . n D 1 113 ASN 113 126 126 ASN ASN A . n D 1 114 THR 114 127 127 THR THR A . n D 1 115 LEU 115 128 128 LEU LEU A . n D 1 116 SER 116 129 129 SER SER A . n D 1 117 ASP 117 130 130 ASP ASP A . n D 1 118 THR 118 131 131 THR THR A . n D 1 119 VAL 119 132 132 VAL VAL A . n D 1 120 VAL 120 133 133 VAL VAL A . n D 1 121 GLN 121 134 134 GLN GLN A . n D 1 122 LEU 122 135 135 LEU LEU A . n D 1 123 ILE 123 136 136 ILE ILE A . n D 1 124 GLU 124 137 137 GLU GLU A . n D 1 125 ASP 125 138 138 ASP ASP A . n D 1 126 ALA 126 139 139 ALA ALA A . n D 1 127 GLU 127 140 140 GLU GLU A . n D 1 128 ARG 128 141 141 ARG ARG A . n D 1 129 LYS 129 142 142 LYS LYS A . n D 1 130 GLU 130 143 143 GLU GLU A . n D 1 131 LYS 131 144 144 LYS LYS A . n D 1 132 TYR 132 145 145 TYR TYR A . n D 1 133 ALA 133 146 146 ALA ALA A . n D 1 134 SER 134 147 147 SER SER A . n D 1 135 GLN 135 148 148 GLN GLN A . n D 1 136 MET 136 149 149 MET MET A . n D 1 137 SER 137 150 150 SER SER A . n D 1 138 SER 138 151 151 SER SER A . n D 1 139 LEU 139 152 152 LEU LEU A . n D 1 140 LYS 140 153 153 LYS LYS A . n D 1 141 GLN 141 154 154 GLN GLN A . n D 1 142 ASP 142 155 155 ASP ASP A . n D 1 143 LEU 143 156 156 LEU LEU A . n D 1 144 LYS 144 157 157 LYS LYS A . n D 1 145 ASP 145 158 158 ASP ASP A . n D 1 146 ILE 146 159 159 ILE ILE A . n D 1 147 LEU 147 160 160 LEU LEU A . n D 1 148 ASP 148 161 ? ? ? A . n D 1 149 LYS 149 162 ? ? ? A . n D 1 150 GLU 150 163 ? ? ? A . n D 1 151 VAL 151 164 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CA 1 101 3 CA CA N . F 4 CA 1 102 4 CA CA N . G 4 CA 1 101 1 CA CA M . H 5 HOH 1 201 3 HOH TIP B . H 5 HOH 2 202 7 HOH TIP B . I 5 HOH 1 201 6 HOH TIP N . J 5 HOH 1 201 1 HOH TIP M . K 5 HOH 1 201 2 HOH TIP A . K 5 HOH 2 202 4 HOH TIP A . K 5 HOH 3 203 5 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 CNS refinement 1.2 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3VEB _cell.length_a 102.300 _cell.length_b 102.300 _cell.length_c 193.570 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VEB _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VEB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.20 _exptl_crystal.density_percent_sol 61.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '20% PEG3000, 0.2 M calcium chloride, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-12-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'KHOZU double flat crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98037 1.0 2 0.98047 1.0 3 0.91904 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98037,0.98047,0.91904 # _reflns.entry_id 3VEB _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 96.7 _reflns.d_resolution_high 2.80 _reflns.number_obs 14660 _reflns.number_all ? _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 52.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3VEB _refine.ls_number_reflns_obs 14660 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 795870.57 _refine.pdbx_data_cutoff_low_absF 0.0 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.08 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.266 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.266 _refine.ls_R_factor_R_free 0.283 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.0 _refine.ls_number_reflns_R_free 944 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 105.8 _refine.aniso_B[1][1] -1.20 _refine.aniso_B[2][2] -1.20 _refine.aniso_B[3][3] 2.39 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 101.1 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3VEB _refine_analyze.Luzzati_coordinate_error_obs 0.57 _refine_analyze.Luzzati_sigma_a_obs 0.52 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.49 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2472 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 3132 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 40.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.018 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.5 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 20.0 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 1.45 ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 3.65 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 5.76 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 5.48 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 8.18 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1831 _refine_ls_shell.R_factor_R_work 0.528 _refine_ls_shell.percent_reflns_obs 80.0 _refine_ls_shell.R_factor_R_free 0.570 _refine_ls_shell.R_factor_R_free_error 0.044 _refine_ls_shell.percent_reflns_R_free 8.3 _refine_ls_shell.number_reflns_R_free 166 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3VEB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VEB _struct.title 'Crystal Structure of Matp-matS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VEB _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'macrodomains, chromosome, DNA condensation, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MATP_YERPE Q8ZG78 1 ;MKYQQLENLESGWKWAYLVKKHREGEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKR HFNAEHQHTRKKSIDLEFLVWQRLAVLARRRGNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDILDKEV ; 1 ? 2 PDB 3VEB 3VEB 3 ACGTGACAATGTCACG 1 ? 3 PDB 3VEB 3VEB 2 TCGTGACATTGTCACG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VEB B 1 ? 151 ? Q8ZG78 1 ? 151 ? 14 164 2 1 3VEB A 1 ? 151 ? Q8ZG78 1 ? 151 ? 14 164 3 2 3VEB M 1 ? 16 ? 3VEB 1 ? 16 ? 1 16 4 3 3VEB N 1 ? 16 ? 3VEB 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 22740 ? 1 MORE -180 ? 1 'SSA (A^2)' 41050 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_574 x,x-y+2,-z-1/6 0.5000000000 0.8660254038 0.0000000000 -102.3000000000 0.8660254038 -0.5000000000 0.0000000000 177.1887976143 0.0000000000 0.0000000000 -1.0000000000 -32.2616666667 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 6 ? GLU A 24 ? LEU B 19 GLU B 37 1 ? 19 HELX_P HELX_P2 2 GLU A 33 ? LYS A 46 ? GLU B 46 LYS B 59 1 ? 14 HELX_P HELX_P3 3 GLU A 50 ? HIS A 61 ? GLU B 63 HIS B 74 1 ? 12 HELX_P HELX_P4 4 LEU A 66 ? ASN A 83 ? LEU B 79 ASN B 96 1 ? 18 HELX_P HELX_P5 5 GLU A 97 ? ARG A 110 ? GLU B 110 ARG B 123 1 ? 14 HELX_P HELX_P6 6 THR A 114 ? ARG A 128 ? THR B 127 ARG B 141 1 ? 15 HELX_P HELX_P7 7 ALA A 133 ? LEU A 147 ? ALA B 146 LEU B 160 1 ? 15 HELX_P HELX_P8 8 LEU D 6 ? ARG D 23 ? LEU A 19 ARG A 36 1 ? 18 HELX_P HELX_P9 9 GLU D 33 ? LYS D 46 ? GLU A 46 LYS A 59 1 ? 14 HELX_P HELX_P10 10 PRO D 51 ? MET D 62 ? PRO A 64 MET A 75 1 ? 12 HELX_P HELX_P11 11 ASN D 63 ? ALA D 84 ? ASN A 76 ALA A 97 1 ? 22 HELX_P HELX_P12 12 GLU D 85 ? ARG D 90 ? GLU A 98 ARG A 103 5 ? 6 HELX_P HELX_P13 13 PHE D 98 ? GLY D 112 ? PHE A 111 GLY A 125 1 ? 15 HELX_P HELX_P14 14 THR D 114 ? ILE D 146 ? THR A 127 ILE A 159 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 16 N1 ? ? N DC 2 M DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 16 O6 ? ? N DC 2 M DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 16 N2 ? ? N DC 2 M DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? N DG 3 M DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 15 O2 ? ? N DG 3 M DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 15 N4 ? ? N DG 3 M DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 14 N1 ? ? N DT 4 M DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 14 N6 ? ? N DT 4 M DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 13 N3 ? ? N DG 5 M DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 13 O2 ? ? N DG 5 M DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 13 N4 ? ? N DG 5 M DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 12 N3 ? ? N DA 6 M DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 12 O4 ? ? N DA 6 M DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 11 N1 ? ? N DC 7 M DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 11 O6 ? ? N DC 7 M DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 11 N2 ? ? N DC 7 M DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 10 N3 ? ? N DA 8 M DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 10 O4 ? ? N DA 8 M DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 9 N1 ? ? N DT 9 M DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 9 N6 ? ? N DT 9 M DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 8 N1 ? ? N DT 10 M DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 8 N6 ? ? N DT 10 M DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 7 N3 ? ? N DG 11 M DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 7 O2 ? ? N DG 11 M DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 7 N4 ? ? N DG 11 M DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 6 N1 ? ? N DT 12 M DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 6 N6 ? ? N DT 12 M DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 5 N1 ? ? N DC 13 M DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 5 O6 ? ? N DC 13 M DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 5 N2 ? ? N DC 13 M DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 4 N3 ? ? N DA 14 M DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 4 O4 ? ? N DA 14 M DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 15 N3 ? ? ? 1_555 C DG 3 N1 ? ? N DC 15 M DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 15 N4 ? ? ? 1_555 C DG 3 O6 ? ? N DC 15 M DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 15 O2 ? ? ? 1_555 C DG 3 N2 ? ? N DC 15 M DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DC 2 N3 ? ? N DG 16 M DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 16 N2 ? ? ? 1_555 C DC 2 O2 ? ? N DG 16 M DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DC 2 N4 ? ? N DG 16 M DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 91 ? SER A 93 ? LYS B 104 SER B 106 A 2 ASP D 95 ? GLU D 97 ? ASP A 108 GLU A 110 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 92 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id B _pdbx_struct_sheet_hbond.range_1_auth_seq_id 105 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id D _pdbx_struct_sheet_hbond.range_2_label_seq_id 96 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 109 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id N _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 102 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE CA N 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG C 16 ? DG M 16 . ? 1_555 ? 2 AC1 2 DG B 3 ? DG N 3 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 N DT 4 ? ? O4 N DT 4 ? ? 1.296 1.228 0.068 0.009 N 2 1 "O3'" N DT 10 ? ? "C3'" N DT 10 ? ? 1.377 1.419 -0.042 0.006 N 3 1 C4 N DT 10 ? ? C5 N DT 10 ? ? 1.516 1.445 0.071 0.009 N 4 1 N1 M DA 1 ? ? C2 M DA 1 ? ? 1.394 1.339 0.055 0.009 N 5 1 C6 M DA 1 ? ? N1 M DA 1 ? ? 1.395 1.351 0.044 0.007 N 6 1 C2 M DC 2 ? ? O2 M DC 2 ? ? 1.320 1.240 0.080 0.009 N 7 1 C4 M DT 4 ? ? O4 M DT 4 ? ? 1.323 1.228 0.095 0.009 N 8 1 C2 M DA 9 ? ? N3 M DA 9 ? ? 1.393 1.331 0.062 0.009 N 9 1 C2 M DC 13 ? ? N3 M DC 13 ? ? 1.424 1.353 0.071 0.008 N 10 1 C5 M DG 16 ? ? N7 M DG 16 ? ? 1.429 1.388 0.041 0.006 N 11 1 C8 M DG 16 ? ? N9 M DG 16 ? ? 1.425 1.374 0.051 0.007 N 12 1 C A LYS 15 ? ? O A LYS 15 ? ? 1.360 1.229 0.131 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 93 ? ? CZ B ARG 93 ? ? NH2 B ARG 93 ? ? 116.91 120.30 -3.39 0.50 N 2 1 "O4'" M DG 16 ? ? "C1'" M DG 16 ? ? N9 M DG 16 ? ? 110.74 108.30 2.44 0.30 N 3 1 C8 M DG 16 ? ? N9 M DG 16 ? ? C4 M DG 16 ? ? 103.73 106.40 -2.67 0.40 N 4 1 N9 M DG 16 ? ? C4 M DG 16 ? ? C5 M DG 16 ? ? 108.75 105.40 3.35 0.40 N 5 1 N A TYR 16 ? ? CA A TYR 16 ? ? C A TYR 16 ? ? 90.54 111.00 -20.46 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU B 20 ? ? -34.96 -39.59 2 1 GLU B 61 ? ? -29.30 -65.66 3 1 HIS B 74 ? ? -136.76 -34.25 4 1 ALA B 80 ? ? -29.70 -76.52 5 1 ASN B 96 ? ? -55.32 -6.45 6 1 PHE B 111 ? ? -47.91 -76.23 7 1 LEU B 112 ? ? -39.51 -35.94 8 1 ARG B 124 ? ? -147.18 -11.70 9 1 LYS B 142 ? ? -109.94 79.67 10 1 LYS B 144 ? ? -157.11 58.18 11 1 ASP B 161 ? ? -136.93 -74.32 12 1 LEU A 19 ? ? -59.92 88.05 13 1 ARG A 36 ? ? -59.46 -4.56 14 1 HIS A 44 ? ? -107.23 -153.58 15 1 ILE A 45 ? ? -136.76 -59.97 16 1 SER A 48 ? ? -56.02 -87.51 17 1 GLU A 61 ? ? -37.95 -81.81 18 1 HIS A 74 ? ? -143.50 -48.23 19 1 PHE A 111 ? ? -27.79 -52.66 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG N 3 ? ? 0.054 'SIDE CHAIN' 2 1 DC N 7 ? ? 0.081 'SIDE CHAIN' 3 1 DT N 9 ? ? 0.064 'SIDE CHAIN' 4 1 DG M 5 ? ? 0.062 'SIDE CHAIN' 5 1 DC M 15 ? ? 0.065 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B VAL 164 ? A VAL 151 2 1 Y 1 A MET 14 ? D MET 1 3 1 Y 1 A ASP 161 ? D ASP 148 4 1 Y 1 A LYS 162 ? D LYS 149 5 1 Y 1 A GLU 163 ? D GLU 150 6 1 Y 1 A VAL 164 ? D VAL 151 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 DA OP3 O N N 75 DA P P N N 76 DA OP1 O N N 77 DA OP2 O N N 78 DA "O5'" O N N 79 DA "C5'" C N N 80 DA "C4'" C N R 81 DA "O4'" O N N 82 DA "C3'" C N S 83 DA "O3'" O N N 84 DA "C2'" C N N 85 DA "C1'" C N R 86 DA N9 N Y N 87 DA C8 C Y N 88 DA N7 N Y N 89 DA C5 C Y N 90 DA C6 C Y N 91 DA N6 N N N 92 DA N1 N Y N 93 DA C2 C Y N 94 DA N3 N Y N 95 DA C4 C Y N 96 DA HOP3 H N N 97 DA HOP2 H N N 98 DA "H5'" H N N 99 DA "H5''" H N N 100 DA "H4'" H N N 101 DA "H3'" H N N 102 DA "HO3'" H N N 103 DA "H2'" H N N 104 DA "H2''" H N N 105 DA "H1'" H N N 106 DA H8 H N N 107 DA H61 H N N 108 DA H62 H N N 109 DA H2 H N N 110 DC OP3 O N N 111 DC P P N N 112 DC OP1 O N N 113 DC OP2 O N N 114 DC "O5'" O N N 115 DC "C5'" C N N 116 DC "C4'" C N R 117 DC "O4'" O N N 118 DC "C3'" C N S 119 DC "O3'" O N N 120 DC "C2'" C N N 121 DC "C1'" C N R 122 DC N1 N N N 123 DC C2 C N N 124 DC O2 O N N 125 DC N3 N N N 126 DC C4 C N N 127 DC N4 N N N 128 DC C5 C N N 129 DC C6 C N N 130 DC HOP3 H N N 131 DC HOP2 H N N 132 DC "H5'" H N N 133 DC "H5''" H N N 134 DC "H4'" H N N 135 DC "H3'" H N N 136 DC "HO3'" H N N 137 DC "H2'" H N N 138 DC "H2''" H N N 139 DC "H1'" H N N 140 DC H41 H N N 141 DC H42 H N N 142 DC H5 H N N 143 DC H6 H N N 144 DG OP3 O N N 145 DG P P N N 146 DG OP1 O N N 147 DG OP2 O N N 148 DG "O5'" O N N 149 DG "C5'" C N N 150 DG "C4'" C N R 151 DG "O4'" O N N 152 DG "C3'" C N S 153 DG "O3'" O N N 154 DG "C2'" C N N 155 DG "C1'" C N R 156 DG N9 N Y N 157 DG C8 C Y N 158 DG N7 N Y N 159 DG C5 C Y N 160 DG C6 C N N 161 DG O6 O N N 162 DG N1 N N N 163 DG C2 C N N 164 DG N2 N N N 165 DG N3 N N N 166 DG C4 C Y N 167 DG HOP3 H N N 168 DG HOP2 H N N 169 DG "H5'" H N N 170 DG "H5''" H N N 171 DG "H4'" H N N 172 DG "H3'" H N N 173 DG "HO3'" H N N 174 DG "H2'" H N N 175 DG "H2''" H N N 176 DG "H1'" H N N 177 DG H8 H N N 178 DG H1 H N N 179 DG H21 H N N 180 DG H22 H N N 181 DT OP3 O N N 182 DT P P N N 183 DT OP1 O N N 184 DT OP2 O N N 185 DT "O5'" O N N 186 DT "C5'" C N N 187 DT "C4'" C N R 188 DT "O4'" O N N 189 DT "C3'" C N S 190 DT "O3'" O N N 191 DT "C2'" C N N 192 DT "C1'" C N R 193 DT N1 N N N 194 DT C2 C N N 195 DT O2 O N N 196 DT N3 N N N 197 DT C4 C N N 198 DT O4 O N N 199 DT C5 C N N 200 DT C7 C N N 201 DT C6 C N N 202 DT HOP3 H N N 203 DT HOP2 H N N 204 DT "H5'" H N N 205 DT "H5''" H N N 206 DT "H4'" H N N 207 DT "H3'" H N N 208 DT "HO3'" H N N 209 DT "H2'" H N N 210 DT "H2''" H N N 211 DT "H1'" H N N 212 DT H3 H N N 213 DT H71 H N N 214 DT H72 H N N 215 DT H73 H N N 216 DT H6 H N N 217 GLN N N N N 218 GLN CA C N S 219 GLN C C N N 220 GLN O O N N 221 GLN CB C N N 222 GLN CG C N N 223 GLN CD C N N 224 GLN OE1 O N N 225 GLN NE2 N N N 226 GLN OXT O N N 227 GLN H H N N 228 GLN H2 H N N 229 GLN HA H N N 230 GLN HB2 H N N 231 GLN HB3 H N N 232 GLN HG2 H N N 233 GLN HG3 H N N 234 GLN HE21 H N N 235 GLN HE22 H N N 236 GLN HXT H N N 237 GLU N N N N 238 GLU CA C N S 239 GLU C C N N 240 GLU O O N N 241 GLU CB C N N 242 GLU CG C N N 243 GLU CD C N N 244 GLU OE1 O N N 245 GLU OE2 O N N 246 GLU OXT O N N 247 GLU H H N N 248 GLU H2 H N N 249 GLU HA H N N 250 GLU HB2 H N N 251 GLU HB3 H N N 252 GLU HG2 H N N 253 GLU HG3 H N N 254 GLU HE2 H N N 255 GLU HXT H N N 256 GLY N N N N 257 GLY CA C N N 258 GLY C C N N 259 GLY O O N N 260 GLY OXT O N N 261 GLY H H N N 262 GLY H2 H N N 263 GLY HA2 H N N 264 GLY HA3 H N N 265 GLY HXT H N N 266 HIS N N N N 267 HIS CA C N S 268 HIS C C N N 269 HIS O O N N 270 HIS CB C N N 271 HIS CG C Y N 272 HIS ND1 N Y N 273 HIS CD2 C Y N 274 HIS CE1 C Y N 275 HIS NE2 N Y N 276 HIS OXT O N N 277 HIS H H N N 278 HIS H2 H N N 279 HIS HA H N N 280 HIS HB2 H N N 281 HIS HB3 H N N 282 HIS HD1 H N N 283 HIS HD2 H N N 284 HIS HE1 H N N 285 HIS HE2 H N N 286 HIS HXT H N N 287 HOH O O N N 288 HOH H1 H N N 289 HOH H2 H N N 290 ILE N N N N 291 ILE CA C N S 292 ILE C C N N 293 ILE O O N N 294 ILE CB C N S 295 ILE CG1 C N N 296 ILE CG2 C N N 297 ILE CD1 C N N 298 ILE OXT O N N 299 ILE H H N N 300 ILE H2 H N N 301 ILE HA H N N 302 ILE HB H N N 303 ILE HG12 H N N 304 ILE HG13 H N N 305 ILE HG21 H N N 306 ILE HG22 H N N 307 ILE HG23 H N N 308 ILE HD11 H N N 309 ILE HD12 H N N 310 ILE HD13 H N N 311 ILE HXT H N N 312 LEU N N N N 313 LEU CA C N S 314 LEU C C N N 315 LEU O O N N 316 LEU CB C N N 317 LEU CG C N N 318 LEU CD1 C N N 319 LEU CD2 C N N 320 LEU OXT O N N 321 LEU H H N N 322 LEU H2 H N N 323 LEU HA H N N 324 LEU HB2 H N N 325 LEU HB3 H N N 326 LEU HG H N N 327 LEU HD11 H N N 328 LEU HD12 H N N 329 LEU HD13 H N N 330 LEU HD21 H N N 331 LEU HD22 H N N 332 LEU HD23 H N N 333 LEU HXT H N N 334 LYS N N N N 335 LYS CA C N S 336 LYS C C N N 337 LYS O O N N 338 LYS CB C N N 339 LYS CG C N N 340 LYS CD C N N 341 LYS CE C N N 342 LYS NZ N N N 343 LYS OXT O N N 344 LYS H H N N 345 LYS H2 H N N 346 LYS HA H N N 347 LYS HB2 H N N 348 LYS HB3 H N N 349 LYS HG2 H N N 350 LYS HG3 H N N 351 LYS HD2 H N N 352 LYS HD3 H N N 353 LYS HE2 H N N 354 LYS HE3 H N N 355 LYS HZ1 H N N 356 LYS HZ2 H N N 357 LYS HZ3 H N N 358 LYS HXT H N N 359 MET N N N N 360 MET CA C N S 361 MET C C N N 362 MET O O N N 363 MET CB C N N 364 MET CG C N N 365 MET SD S N N 366 MET CE C N N 367 MET OXT O N N 368 MET H H N N 369 MET H2 H N N 370 MET HA H N N 371 MET HB2 H N N 372 MET HB3 H N N 373 MET HG2 H N N 374 MET HG3 H N N 375 MET HE1 H N N 376 MET HE2 H N N 377 MET HE3 H N N 378 MET HXT H N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 THR N N N N 434 THR CA C N S 435 THR C C N N 436 THR O O N N 437 THR CB C N R 438 THR OG1 O N N 439 THR CG2 C N N 440 THR OXT O N N 441 THR H H N N 442 THR H2 H N N 443 THR HA H N N 444 THR HB H N N 445 THR HG1 H N N 446 THR HG21 H N N 447 THR HG22 H N N 448 THR HG23 H N N 449 THR HXT H N N 450 TRP N N N N 451 TRP CA C N S 452 TRP C C N N 453 TRP O O N N 454 TRP CB C N N 455 TRP CG C Y N 456 TRP CD1 C Y N 457 TRP CD2 C Y N 458 TRP NE1 N Y N 459 TRP CE2 C Y N 460 TRP CE3 C Y N 461 TRP CZ2 C Y N 462 TRP CZ3 C Y N 463 TRP CH2 C Y N 464 TRP OXT O N N 465 TRP H H N N 466 TRP H2 H N N 467 TRP HA H N N 468 TRP HB2 H N N 469 TRP HB3 H N N 470 TRP HD1 H N N 471 TRP HE1 H N N 472 TRP HE3 H N N 473 TRP HZ2 H N N 474 TRP HZ3 H N N 475 TRP HH2 H N N 476 TRP HXT H N N 477 TYR N N N N 478 TYR CA C N S 479 TYR C C N N 480 TYR O O N N 481 TYR CB C N N 482 TYR CG C Y N 483 TYR CD1 C Y N 484 TYR CD2 C Y N 485 TYR CE1 C Y N 486 TYR CE2 C Y N 487 TYR CZ C Y N 488 TYR OH O N N 489 TYR OXT O N N 490 TYR H H N N 491 TYR H2 H N N 492 TYR HA H N N 493 TYR HB2 H N N 494 TYR HB3 H N N 495 TYR HD1 H N N 496 TYR HD2 H N N 497 TYR HE1 H N N 498 TYR HE2 H N N 499 TYR HH H N N 500 TYR HXT H N N 501 VAL N N N N 502 VAL CA C N S 503 VAL C C N N 504 VAL O O N N 505 VAL CB C N N 506 VAL CG1 C N N 507 VAL CG2 C N N 508 VAL OXT O N N 509 VAL H H N N 510 VAL H2 H N N 511 VAL HA H N N 512 VAL HB H N N 513 VAL HG11 H N N 514 VAL HG12 H N N 515 VAL HG13 H N N 516 VAL HG21 H N N 517 VAL HG22 H N N 518 VAL HG23 H N N 519 VAL HXT H N N 520 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VEB 'double helix' 3VEB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 16 1_555 0.722 -0.696 -0.007 -2.561 -5.275 -3.597 1 N_DC2:DG16_M N 2 ? M 16 ? 19 1 1 B DG 3 1_555 C DC 15 1_555 -0.087 -0.513 0.304 6.163 -3.417 2.320 2 N_DG3:DC15_M N 3 ? M 15 ? 19 1 1 B DT 4 1_555 C DA 14 1_555 -0.131 -0.434 -0.201 -3.237 -9.157 -0.555 3 N_DT4:DA14_M N 4 ? M 14 ? 20 1 1 B DG 5 1_555 C DC 13 1_555 -0.212 -0.472 0.200 5.267 0.568 -3.378 4 N_DG5:DC13_M N 5 ? M 13 ? 19 1 1 B DA 6 1_555 C DT 12 1_555 0.220 -0.333 0.128 5.365 -6.520 0.208 5 N_DA6:DT12_M N 6 ? M 12 ? 20 1 1 B DC 7 1_555 C DG 11 1_555 -0.096 -0.347 -0.032 7.314 -7.416 -4.525 6 N_DC7:DG11_M N 7 ? M 11 ? 19 1 1 B DA 8 1_555 C DT 10 1_555 -0.091 -0.482 -0.001 3.860 -3.788 3.553 7 N_DA8:DT10_M N 8 ? M 10 ? 20 1 1 B DT 9 1_555 C DA 9 1_555 -0.862 -0.269 -0.049 3.662 -3.953 -0.629 8 N_DT9:DA9_M N 9 ? M 9 ? 20 1 1 B DT 10 1_555 C DA 8 1_555 -0.432 -0.305 0.116 -0.120 -5.328 -1.924 9 N_DT10:DA8_M N 10 ? M 8 ? 20 1 1 B DG 11 1_555 C DC 7 1_555 -1.053 -0.510 0.272 8.750 -6.128 -0.751 10 N_DG11:DC7_M N 11 ? M 7 ? 19 1 1 B DT 12 1_555 C DA 6 1_555 -0.505 -0.288 -0.342 8.496 -6.802 1.571 11 N_DT12:DA6_M N 12 ? M 6 ? 20 1 1 B DC 13 1_555 C DG 5 1_555 -0.607 -0.400 -0.089 7.164 -0.874 -1.257 12 N_DC13:DG5_M N 13 ? M 5 ? 19 1 1 B DA 14 1_555 C DT 4 1_555 -0.538 -0.540 0.100 7.056 -6.675 -1.574 13 N_DA14:DT4_M N 14 ? M 4 ? 20 1 1 B DC 15 1_555 C DG 3 1_555 -0.237 -0.211 0.129 1.503 -6.759 -9.213 14 N_DC15:DG3_M N 15 ? M 3 ? 19 1 1 B DG 16 1_555 C DC 2 1_555 -0.478 -0.468 0.293 13.564 -4.060 -2.087 15 N_DG16:DC2_M N 16 ? M 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 16 1_555 B DG 3 1_555 C DC 15 1_555 0.141 0.319 3.185 0.240 5.457 28.876 -0.524 -0.228 3.190 10.821 -0.475 29.377 1 NN_DC2DG3:DC15DG16_MM N 2 ? M 16 ? N 3 ? M 15 ? 1 B DG 3 1_555 C DC 15 1_555 B DT 4 1_555 C DA 14 1_555 0.438 -0.734 3.365 5.707 7.302 30.556 -2.685 0.258 3.140 13.471 -10.528 31.898 2 NN_DG3DT4:DA14DC15_MM N 3 ? M 15 ? N 4 ? M 14 ? 1 B DT 4 1_555 C DA 14 1_555 B DG 5 1_555 C DC 13 1_555 0.002 0.797 3.209 -3.068 7.211 36.810 0.294 -0.404 3.290 11.263 4.793 37.607 3 NN_DT4DG5:DC13DA14_MM N 4 ? M 14 ? N 5 ? M 13 ? 1 B DG 5 1_555 C DC 13 1_555 B DA 6 1_555 C DT 12 1_555 0.061 -0.265 3.279 0.168 2.399 34.922 -0.802 -0.076 3.254 3.992 -0.280 35.002 4 NN_DG5DA6:DT12DC13_MM N 5 ? M 13 ? N 6 ? M 12 ? 1 B DA 6 1_555 C DT 12 1_555 B DC 7 1_555 C DG 11 1_555 0.543 -1.020 3.191 1.128 2.324 26.450 -2.809 -0.896 3.112 5.063 -2.458 26.574 5 NN_DA6DC7:DG11DT12_MM N 6 ? M 12 ? N 7 ? M 11 ? 1 B DC 7 1_555 C DG 11 1_555 B DA 8 1_555 C DT 10 1_555 0.253 -0.826 3.357 -0.611 10.154 35.026 -2.722 -0.489 3.005 16.447 0.989 36.428 6 NN_DC7DA8:DT10DG11_MM N 7 ? M 11 ? N 8 ? M 10 ? 1 B DA 8 1_555 C DT 10 1_555 B DT 9 1_555 C DA 9 1_555 -0.777 -0.875 3.344 -1.538 5.829 27.521 -3.164 1.236 3.134 12.069 3.184 28.161 7 NN_DA8DT9:DA9DT10_MM N 8 ? M 10 ? N 9 ? M 9 ? 1 B DT 9 1_555 C DA 9 1_555 B DT 10 1_555 C DA 8 1_555 -0.198 -0.317 3.458 -0.427 1.969 31.585 -0.965 0.280 3.435 3.613 0.783 31.647 8 NN_DT9DT10:DA8DA9_MM N 9 ? M 9 ? N 10 ? M 8 ? 1 B DT 10 1_555 C DA 8 1_555 B DG 11 1_555 C DC 7 1_555 0.567 -0.318 3.085 -3.712 7.879 33.026 -1.697 -1.510 2.857 13.568 6.392 34.124 9 NN_DT10DG11:DC7DA8_MM N 10 ? M 8 ? N 11 ? M 7 ? 1 B DG 11 1_555 C DC 7 1_555 B DT 12 1_555 C DA 6 1_555 -0.416 -0.589 3.218 4.916 2.585 31.471 -1.524 1.618 3.062 4.719 -8.975 31.945 10 NN_DG11DT12:DA6DC7_MM N 11 ? M 7 ? N 12 ? M 6 ? 1 B DT 12 1_555 C DA 6 1_555 B DC 13 1_555 C DG 5 1_555 -0.283 -0.505 3.373 -2.344 6.171 31.355 -2.051 0.082 3.229 11.261 4.279 32.026 11 NN_DT12DC13:DG5DA6_MM N 12 ? M 6 ? N 13 ? M 5 ? 1 B DC 13 1_555 C DG 5 1_555 B DA 14 1_555 C DT 4 1_555 0.552 0.692 3.346 -1.011 5.517 37.588 0.335 -0.981 3.395 8.504 1.559 37.989 12 NN_DC13DA14:DT4DG5_MM N 13 ? M 5 ? N 14 ? M 4 ? 1 B DA 14 1_555 C DT 4 1_555 B DC 15 1_555 C DG 3 1_555 -0.695 -0.717 3.421 -0.515 4.516 29.954 -2.314 1.223 3.291 8.675 0.989 30.290 13 NN_DA14DC15:DG3DT4_MM N 14 ? M 4 ? N 15 ? M 3 ? 1 B DC 15 1_555 C DG 3 1_555 B DG 16 1_555 C DC 2 1_555 0.644 0.406 3.012 -0.927 5.185 34.359 -0.055 -1.209 3.021 8.714 1.557 34.749 14 NN_DC15DG16:DC2DG3_MM N 15 ? M 3 ? N 16 ? M 2 ? # _atom_sites.entry_id 3VEB _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0.005644 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011287 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005166 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_