HEADER TRANSFERASE 09-JAN-12 3VEN TITLE CRYSTAL STRUCTURE OF THE O-CARBAMOYLTRANSFERASE TOBZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-CARBAMOYLTRANSFERASE TOBZ; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOALLOTEICHUS TENEBRARIUS; SOURCE 3 ORGANISM_COMMON: STREPTOMYCES TENEBRARIUS; SOURCE 4 ORGANISM_TAXID: 1933; SOURCE 5 STRAIN: DSM40770T; SOURCE 6 GENE: TACA, TOBZ; SOURCE 7 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 457428; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TK24; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUWL201PW KEYWDS ANTIBIOTIC BIOSYNTHESIS, SUBSTRATE ASSISTED CATALYSIS, SUBSTRATE KEYWDS 2 CHANNELING, ADENYLATION, STRUCTURAL ENZYMOLOGY, ENZYME EVOLUTION, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,M.T.STUBBS,S.GOERLICH,F.JAENECKE REVDAT 5 28-FEB-24 3VEN 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3VEN 1 REMARK REVDAT 3 02-MAY-12 3VEN 1 JRNL REVDAT 2 14-MAR-12 3VEN 1 JRNL REVDAT 1 25-JAN-12 3VEN 0 JRNL AUTH C.PARTHIER,S.GORLICH,F.JAENECKE,C.BREITHAUPT,U.BRAUER, JRNL AUTH 2 U.FANDRICH,D.CLAUSNITZER,U.F.WEHMEIER,C.BOTTCHER,D.SCHEEL, JRNL AUTH 3 M.T.STUBBS JRNL TITL THE O-CARBAMOYLTRANSFERASE TOBZ CATALYZES AN ANCIENT JRNL TITL 2 ENZYMATIC REACTION. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 4046 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22383337 JRNL DOI 10.1002/ANIE.201108896 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 214288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 10692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0928 - 4.8738 1.00 6825 355 0.1775 0.1875 REMARK 3 2 4.8738 - 3.8703 1.00 6823 361 0.1321 0.1430 REMARK 3 3 3.8703 - 3.3815 1.00 6824 351 0.1448 0.1687 REMARK 3 4 3.3815 - 3.0726 1.00 6801 356 0.1554 0.1836 REMARK 3 5 3.0726 - 2.8525 1.00 6822 356 0.1500 0.1890 REMARK 3 6 2.8525 - 2.6844 1.00 6787 351 0.1492 0.1744 REMARK 3 7 2.6844 - 2.5500 1.00 6839 359 0.1421 0.1799 REMARK 3 8 2.5500 - 2.4390 1.00 6816 361 0.1324 0.1624 REMARK 3 9 2.4390 - 2.3451 1.00 6809 356 0.1368 0.1803 REMARK 3 10 2.3451 - 2.2642 1.00 6829 363 0.1298 0.1755 REMARK 3 11 2.2642 - 2.1934 1.00 6783 357 0.1197 0.1614 REMARK 3 12 2.1934 - 2.1308 1.00 6829 365 0.1186 0.1641 REMARK 3 13 2.1308 - 2.0747 1.00 6809 355 0.1239 0.1648 REMARK 3 14 2.0747 - 2.0241 1.00 6814 360 0.1148 0.1613 REMARK 3 15 2.0241 - 1.9780 1.00 6813 355 0.1197 0.1658 REMARK 3 16 1.9780 - 1.9360 1.00 6816 347 0.1116 0.1610 REMARK 3 17 1.9360 - 1.8972 1.00 6804 359 0.1224 0.1676 REMARK 3 18 1.8972 - 1.8614 1.00 6803 357 0.1344 0.1905 REMARK 3 19 1.8614 - 1.8282 1.00 6794 349 0.1343 0.1736 REMARK 3 20 1.8282 - 1.7972 1.00 6779 364 0.1393 0.1875 REMARK 3 21 1.7972 - 1.7682 0.99 6724 356 0.1404 0.1588 REMARK 3 22 1.7682 - 1.7410 0.99 6807 367 0.1477 0.1926 REMARK 3 23 1.7410 - 1.7154 0.99 6757 361 0.1593 0.1976 REMARK 3 24 1.7154 - 1.6912 0.99 6790 356 0.1641 0.2096 REMARK 3 25 1.6912 - 1.6684 0.99 6704 352 0.1657 0.2085 REMARK 3 26 1.6684 - 1.6467 0.99 6710 354 0.1725 0.2073 REMARK 3 27 1.6467 - 1.6261 0.99 6754 349 0.1872 0.2445 REMARK 3 28 1.6261 - 1.6065 0.99 6741 353 0.2009 0.2246 REMARK 3 29 1.6065 - 1.5879 0.98 6685 357 0.2154 0.2557 REMARK 3 30 1.5879 - 1.5700 0.98 6705 350 0.2256 0.2749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 46.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44190 REMARK 3 B22 (A**2) : 1.44190 REMARK 3 B33 (A**2) : -2.88380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 4639 REMARK 3 ANGLE : 1.617 6329 REMARK 3 CHIRALITY : 0.125 684 REMARK 3 PLANARITY : 0.009 848 REMARK 3 DIHEDRAL : 12.353 1695 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE FACTOR FILE CONTAINS FRIEDEL REMARK 3 PAIRS. REMARK 4 REMARK 4 3VEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 214415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 34.085 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SOLOMON, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM POTASSIUM TARTRATE, 0.1 M REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.63200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.26400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.44800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 234.08000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.81600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.63200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.26400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 234.08000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.44800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.81600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1338 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 273 O HOH A 1264 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 550 CB SER A 550 OG 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 445 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 -3.19 78.91 REMARK 500 ALA A 122 -60.28 -91.65 REMARK 500 GLU A 142 -49.90 -140.44 REMARK 500 VAL A 198 -64.34 -96.31 REMARK 500 ALA A 204 -46.17 -135.74 REMARK 500 VAL A 335 43.24 -105.69 REMARK 500 ARG A 445 -163.08 -120.21 REMARK 500 ASN A 507 78.07 -170.69 REMARK 500 ASN A 532 -171.11 -177.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 604 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 118 NE2 91.5 REMARK 620 3 ASP A 137 OD2 97.2 100.7 REMARK 620 4 ASP A 137 OD1 153.6 97.9 56.9 REMARK 620 5 ASP A 338 OD2 97.5 88.4 162.5 107.3 REMARK 620 6 HOH A1214 O 85.5 175.1 83.5 86.4 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 242 O REMARK 620 2 ARG A 243 O 71.8 REMARK 620 3 ARG A 243 O 71.9 0.4 REMARK 620 4 TYR A 245 O 79.1 103.9 104.2 REMARK 620 5 HOH A 732 O 49.8 118.4 118.6 52.9 REMARK 620 6 HOH A1019 O 121.1 163.2 162.9 89.9 77.6 REMARK 620 7 HOH A1207 O 141.6 81.4 81.4 81.4 132.4 91.4 REMARK 620 8 HOH A1383 O 64.7 77.6 77.3 141.6 92.0 97.7 135.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 322 O REMARK 620 2 ARG A 324 O 95.1 REMARK 620 3 VAL A 327 O 95.8 75.5 REMARK 620 4 HOH A1001 O 60.9 142.4 78.6 REMARK 620 5 HOH A1351 O 79.5 129.2 154.9 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 601 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 565 O REMARK 620 2 THR A 565 OG1 65.0 REMARK 620 3 HOH A 728 O 76.0 68.1 REMARK 620 4 HOH A1268 O 84.5 132.1 69.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VEO RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH CARBAMOYL PHOSPHATE REMARK 900 RELATED ID: 3VER RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH CARBAMOYL ADENYLATE INTERMEDIATE REMARK 900 RELATED ID: 3VES RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH AMPCPP AND CARBAMOYL PHOSPHATE REMARK 900 RELATED ID: 3VET RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH TOBRAMYCIN, CARBAMOYL PHOSPHATE AND ADP REMARK 900 RELATED ID: 3VEW RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH ADP REMARK 900 RELATED ID: 3VEX RELATED DB: PDB REMARK 900 TOBZ H14N VARIANT IN COMPLEX WITH CARBAMOYL ADENYLATE INTERMEDIATE REMARK 900 RELATED ID: 3VEZ RELATED DB: PDB REMARK 900 TOBZ K443A VARIANT IN COMPLEX WITH ATP, ADP AND CARBAMOYL PHOSPHATE REMARK 900 RELATED ID: 3VF2 RELATED DB: PDB REMARK 900 TOBZ M473I VARIANT IN COMPLEX WITH CARBAMOYL PHOSPHATE AND ADP REMARK 900 RELATED ID: 3VF4 RELATED DB: PDB REMARK 900 TOBZ S530A VARIANT IN COMPLEX WITH CARBAMOYL PHOSPHATE AND ADP DBREF 3VEN A 1 570 UNP Q70IY1 Q70IY1_STRSD 1 570 SEQADV 3VEN HIS A -5 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN HIS A -4 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN HIS A -3 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN HIS A -2 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN HIS A -1 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN HIS A 0 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEN LEU A 35 UNP Q70IY1 PHE 35 ENGINEERED MUTATION SEQRES 1 A 576 HIS HIS HIS HIS HIS HIS MET ARG VAL LEU GLY LEU ASN SEQRES 2 A 576 GLY TRP PRO ARG ASP PHE HIS ASP ALA SER ALA ALA LEU SEQRES 3 A 576 LEU VAL ASP GLY ARG ILE ALA ALA PHE ALA GLU GLU GLU SEQRES 4 A 576 ARG LEU THR ARG LYS LYS HIS GLY TYR ASN THR ALA PRO SEQRES 5 A 576 VAL GLN ALA ALA ALA PHE CYS LEU ALA GLN ALA GLY LEU SEQRES 6 A 576 THR VAL ASP ASP LEU ASP ALA VAL ALA PHE GLY TRP ASP SEQRES 7 A 576 LEU PRO ALA MET TYR ARG GLU ARG LEU GLY GLY TRP PRO SEQRES 8 A 576 HIS SER ASP SER GLU ALA LEU ASP ILE LEU LEU PRO ARG SEQRES 9 A 576 ASP VAL PHE PRO ARG ARG THR ASP PRO PRO LEU HIS PHE SEQRES 10 A 576 VAL GLN HIS HIS LEU ALA HIS ALA ALA SER ALA TYR TYR SEQRES 11 A 576 PHE SER GLY GLU ASP ARG GLY ALA VAL LEU ILE VAL ASP SEQRES 12 A 576 GLY GLN GLY GLU GLU GLU CYS VAL THR LEU ALA HIS ALA SEQRES 13 A 576 GLU GLY GLY LYS ILE THR VAL LEU ASP THR VAL PRO GLY SEQRES 14 A 576 ALA TRP SER LEU GLY PHE PHE TYR GLU HIS VAL SER GLU SEQRES 15 A 576 TYR THR GLY LEU GLY GLY ASP ASN PRO GLY LYS LEU MET SEQRES 16 A 576 GLY LEU ALA ALA HIS GLY THR THR VAL ASP GLU THR LEU SEQRES 17 A 576 SER ALA PHE ALA PHE ASP SER ASP GLY TYR ARG LEU ASN SEQRES 18 A 576 LEU ILE ASP PRO GLN ALA ARG ASP PRO GLU ASP TRP ASP SEQRES 19 A 576 GLU TYR SER VAL THR GLU ARG ALA TRP PHE ALA HIS LEU SEQRES 20 A 576 GLU ARG ILE TYR ARG LEU PRO PRO ASN GLU PHE VAL ARG SEQRES 21 A 576 ARG TYR ASP PRO ALA LYS GLY ARG VAL VAL ARG ASP THR SEQRES 22 A 576 ARG ARG ASP PRO TYR GLU TYR ARG ASP LEU ALA ALA THR SEQRES 23 A 576 ALA GLN ALA ALA LEU GLU ARG ALA VAL PHE GLY LEU ALA SEQRES 24 A 576 ASP SER VAL LEU ALA ARG THR GLY GLU ARG THR LEU PHE SEQRES 25 A 576 VAL ALA GLY GLY VAL GLY LEU ASN ALA THR MET ASN GLY SEQRES 26 A 576 LYS LEU LEU THR ARG SER THR VAL ASP LYS MET PHE VAL SEQRES 27 A 576 PRO PRO VAL ALA SER ASP ILE GLY VAL SER LEU GLY ALA SEQRES 28 A 576 ALA ALA ALA VAL ALA VAL GLU LEU GLY ASP ARG ILE ALA SEQRES 29 A 576 PRO MET GLY ASP THR ALA ALA TRP GLY PRO GLU PHE SER SEQRES 30 A 576 PRO ASP GLN VAL ARG ALA ALA LEU ASP ARG THR GLY LEU SEQRES 31 A 576 ALA TYR ARG GLU PRO ALA ASN LEU GLU ARG GLU VAL ALA SEQRES 32 A 576 ALA LEU ILE ALA SER GLY LYS VAL VAL GLY TRP ALA GLN SEQRES 33 A 576 GLY ARG GLY GLU VAL GLY PRO ARG ALA LEU GLY GLN ARG SEQRES 34 A 576 SER LEU LEU GLY SER ALA HIS SER PRO THR MET ARG ASP SEQRES 35 A 576 HIS ILE ASN LEU ARG VAL LYS ASP ARG GLU TRP TRP ARG SEQRES 36 A 576 PRO PHE ALA PRO SER MET LEU ARG SER VAL SER ASP GLN SEQRES 37 A 576 VAL LEU GLU VAL ASP ALA ASP PHE PRO TYR MET ILE MET SEQRES 38 A 576 THR THR LYS VAL ARG ALA ALA TYR ALA GLU ARG LEU PRO SEQRES 39 A 576 SER VAL VAL HIS GLU ASP TRP SER THR ARG PRO GLN THR SEQRES 40 A 576 VAL THR GLU ALA SER ASN PRO ARG TYR HIS ARG MET LEU SEQRES 41 A 576 THR GLU LEU GLY ASP LEU VAL GLY ASP PRO VAL CYS LEU SEQRES 42 A 576 ASN THR SER PHE ASN ASP ARG GLY GLU PRO ILE VAL SER SEQRES 43 A 576 SER PRO ALA ASP ALA LEU LEU THR PHE SER ARG LEU PRO SEQRES 44 A 576 ILE ASP ALA LEU ALA VAL GLY PRO TYR LEU VAL THR LYS SEQRES 45 A 576 ASP LEU ARG HIS HET K A 601 1 HET K A 602 1 HET K A 603 1 HET FE2 A 604 1 HET GOL A 605 6 HET TLA A 606 10 HETNAM K POTASSIUM ION HETNAM FE2 FE (II) ION HETNAM GOL GLYCEROL HETNAM TLA L(+)-TARTARIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 K 3(K 1+) FORMUL 5 FE2 FE 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 TLA C4 H6 O6 FORMUL 8 HOH *683(H2 O) HELIX 1 1 GLU A 32 ARG A 37 1 6 HELIX 2 2 PRO A 46 GLY A 58 1 13 HELIX 3 3 THR A 60 LEU A 64 5 5 HELIX 4 4 ASP A 72 LEU A 81 1 10 HELIX 5 5 SER A 87 LEU A 96 1 10 HELIX 6 6 GLN A 113 TYR A 124 1 12 HELIX 7 7 SER A 166 THR A 178 1 13 HELIX 8 8 ASN A 184 ALA A 193 1 10 HELIX 9 9 GLU A 229 TYR A 245 1 17 HELIX 10 10 ASP A 270 GLU A 273 5 4 HELIX 11 11 TYR A 274 GLY A 301 1 28 HELIX 12 12 GLY A 309 LEU A 313 5 5 HELIX 13 13 ASN A 314 THR A 323 1 10 HELIX 14 14 SER A 337 ILE A 339 5 3 HELIX 15 15 GLY A 340 LEU A 353 1 14 HELIX 16 16 SER A 371 GLY A 383 1 13 HELIX 17 17 ASN A 391 SER A 402 1 12 HELIX 18 18 THR A 433 ARG A 441 1 9 HELIX 19 19 ARG A 457 LEU A 464 1 8 HELIX 20 20 ARG A 480 ALA A 484 5 5 HELIX 21 21 ASN A 507 GLY A 522 1 16 HELIX 22 22 SER A 541 LEU A 552 1 12 SHEET 1 A 5 ARG A 25 GLU A 31 0 SHEET 2 A 5 SER A 17 VAL A 22 -1 N LEU A 20 O ALA A 28 SHEET 3 A 5 ARG A 2 ASN A 7 -1 N GLY A 5 O ALA A 19 SHEET 4 A 5 ALA A 66 PHE A 69 1 O ALA A 68 N LEU A 4 SHEET 5 A 5 LEU A 109 PHE A 111 1 O HIS A 110 N PHE A 69 SHEET 1 B 5 LYS A 154 PRO A 162 0 SHEET 2 B 5 GLU A 143 GLU A 151 -1 N LEU A 147 O LEU A 158 SHEET 3 B 5 ARG A 130 VAL A 136 -1 N VAL A 133 O ALA A 148 SHEET 4 B 5 THR A 304 ALA A 308 1 O PHE A 306 N LEU A 134 SHEET 5 B 5 LYS A 329 PHE A 331 1 O LYS A 329 N LEU A 305 SHEET 1 C 2 PHE A 205 ASP A 208 0 SHEET 2 C 2 GLY A 211 LEU A 214 -1 O ARG A 213 N ALA A 206 SHEET 1 D 2 PHE A 252 TYR A 256 0 SHEET 2 D 2 VAL A 263 THR A 267 -1 O ASP A 266 N VAL A 253 SHEET 1 E 7 GLN A 500 VAL A 502 0 SHEET 2 E 7 PRO A 453 LEU A 456 1 N MET A 455 O GLN A 500 SHEET 3 E 7 VAL A 525 SER A 530 -1 O CYS A 526 N SER A 454 SHEET 4 E 7 ARG A 423 SER A 428 -1 N GLY A 427 O LEU A 527 SHEET 5 E 7 VAL A 406 ALA A 409 -1 N VAL A 406 O LEU A 426 SHEET 6 E 7 ALA A 556 VAL A 559 1 O ALA A 558 N GLY A 407 SHEET 7 E 7 TYR A 562 THR A 565 -1 O VAL A 564 N LEU A 557 SHEET 1 F 2 THR A 477 LYS A 478 0 SHEET 2 F 2 SER A 496 THR A 497 -1 O THR A 497 N THR A 477 LINK NE2 HIS A 114 FE FE2 A 604 1555 1555 2.13 LINK NE2 HIS A 118 FE FE2 A 604 1555 1555 2.25 LINK OD2 ASP A 137 FE FE2 A 604 1555 1555 2.30 LINK OD1 ASP A 137 FE FE2 A 604 1555 1555 2.42 LINK O GLU A 242 K K A 603 1555 1555 3.00 LINK O BARG A 243 K K A 603 1555 1555 3.06 LINK O AARG A 243 K K A 603 1555 1555 3.12 LINK O TYR A 245 K K A 603 1555 1555 2.88 LINK O LEU A 322 K K A 602 1555 1555 2.76 LINK O ARG A 324 K K A 602 1555 1555 2.75 LINK O VAL A 327 K K A 602 1555 1555 2.69 LINK OD2 ASP A 338 FE FE2 A 604 1555 1555 2.08 LINK O THR A 565 K K A 601 1555 1555 2.71 LINK OG1 THR A 565 K K A 601 1555 1555 3.17 LINK K K A 601 O HOH A 728 1555 1555 2.97 LINK K K A 601 O HOH A1268 1555 1555 3.23 LINK K K A 602 O HOH A1001 1555 1555 3.14 LINK K K A 602 O HOH A1351 1555 1555 3.47 LINK K K A 603 O HOH A 732 1555 1555 3.45 LINK K K A 603 O HOH A1019 1555 1555 3.46 LINK K K A 603 O HOH A1207 1555 1555 3.22 LINK K K A 603 O HOH A1383 1555 1555 2.74 LINK FE FE2 A 604 O HOH A1214 1555 1555 2.27 SITE 1 AC1 5 THR A 565 LYS A 566 ASP A 567 ARG A 569 SITE 2 AC1 5 HOH A 728 SITE 1 AC2 4 LEU A 322 THR A 323 ARG A 324 VAL A 327 SITE 1 AC3 4 GLU A 242 ARG A 243 TYR A 245 HOH A1383 SITE 1 AC4 5 HIS A 114 HIS A 118 ASP A 137 ASP A 338 SITE 2 AC4 5 HOH A1214 SITE 1 AC5 9 ARG A 435 PRO A 450 PHE A 451 PRO A 488 SITE 2 AC5 9 SER A 489 VAL A 490 VAL A 491 HIS A 492 SITE 3 AC5 9 HOH A1273 SITE 1 AC6 14 ARG A 418 ARG A 445 ARG A 449 PRO A 450 SITE 2 AC6 14 PHE A 451 ARG A 498 THR A 529 HOH A 713 SITE 3 AC6 14 HOH A 925 HOH A 944 HOH A1052 HOH A1090 SITE 4 AC6 14 HOH A1269 HOH A1292 CRYST1 99.023 99.023 280.896 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010099 0.005830 0.000000 0.00000 SCALE2 0.000000 0.011661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003560 0.00000