HEADER TRANSFERASE 09-JAN-12 3VEO TITLE CRYSTAL STRUCTURE OF THE O-CARBAMOYLTRANSFERASE TOBZ IN COMPLEX WITH TITLE 2 CARBAMOYL PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-CARBAMOYLTRANSFERASE TOBZ; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOALLOTEICHUS TENEBRARIUS; SOURCE 3 ORGANISM_COMMON: STREPTOMYCES TENEBRARIUS; SOURCE 4 ORGANISM_TAXID: 1933; SOURCE 5 STRAIN: DSM40770T; SOURCE 6 GENE: TACA, TOBZ; SOURCE 7 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 457428; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TK24; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUWL201PW KEYWDS ANTIBIOTIC BIOSYNTHESIS, SUBSTRATE ASSISTED CATALYSIS, SUBSTRATE KEYWDS 2 CHANNELING, ADENYLATION, STRUCTURAL ENZYMOLOGY, ENZYME EVOLUTION, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,M.T.STUBBS,S.GOERLICH,F.JAENECKE REVDAT 4 13-SEP-23 3VEO 1 REMARK SEQADV LINK REVDAT 3 02-MAY-12 3VEO 1 JRNL REVDAT 2 14-MAR-12 3VEO 1 JRNL REVDAT 1 25-JAN-12 3VEO 0 JRNL AUTH C.PARTHIER,S.GORLICH,F.JAENECKE,C.BREITHAUPT,U.BRAUER, JRNL AUTH 2 U.FANDRICH,D.CLAUSNITZER,U.F.WEHMEIER,C.BOTTCHER,D.SCHEEL, JRNL AUTH 3 M.T.STUBBS JRNL TITL THE O-CARBAMOYLTRANSFERASE TOBZ CATALYZES AN ANCIENT JRNL TITL 2 ENZYMATIC REACTION. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 4046 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22383337 JRNL DOI 10.1002/ANIE.201108896 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1990 - 5.3834 1.00 2953 156 0.1845 0.1808 REMARK 3 2 5.3834 - 4.2773 1.00 2752 145 0.1331 0.1918 REMARK 3 3 4.2773 - 3.7379 1.00 2730 143 0.1374 0.1603 REMARK 3 4 3.7379 - 3.3967 1.00 2669 141 0.1640 0.2258 REMARK 3 5 3.3967 - 3.1535 1.00 2670 140 0.1854 0.2108 REMARK 3 6 3.1535 - 2.9678 1.00 2664 141 0.1814 0.2540 REMARK 3 7 2.9678 - 2.8193 1.00 2635 138 0.1765 0.2268 REMARK 3 8 2.8193 - 2.6967 1.00 2665 141 0.1709 0.2395 REMARK 3 9 2.6967 - 2.5929 1.00 2607 137 0.1700 0.2370 REMARK 3 10 2.5929 - 2.5035 1.00 2628 138 0.1626 0.2085 REMARK 3 11 2.5035 - 2.4252 1.00 2624 138 0.1538 0.2226 REMARK 3 12 2.4252 - 2.3560 1.00 2601 137 0.1666 0.2234 REMARK 3 13 2.3560 - 2.2940 1.00 2623 138 0.1541 0.2352 REMARK 3 14 2.2940 - 2.2380 1.00 2589 136 0.1730 0.2387 REMARK 3 15 2.2380 - 2.1870 0.94 2456 131 0.1840 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 33.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.76550 REMARK 3 B22 (A**2) : 2.76550 REMARK 3 B33 (A**2) : -5.53090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4599 REMARK 3 ANGLE : 1.072 6273 REMARK 3 CHIRALITY : 0.070 679 REMARK 3 PLANARITY : 0.005 837 REMARK 3 DIHEDRAL : 13.697 1685 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:151) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3670 31.6104 26.4567 REMARK 3 T TENSOR REMARK 3 T11: 0.0490 T22: 0.0224 REMARK 3 T33: 0.0257 T12: 0.0402 REMARK 3 T13: 0.0112 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.0066 REMARK 3 L33: 0.0189 L12: -0.0017 REMARK 3 L13: -0.0100 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0198 S13: 0.0047 REMARK 3 S21: -0.0140 S22: -0.0246 S23: 0.0104 REMARK 3 S31: -0.0144 S32: -0.0397 S33: -0.0072 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 152:337) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6718 29.5533 1.8879 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1005 REMARK 3 T33: 0.0871 T12: 0.0466 REMARK 3 T13: -0.0231 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0173 L22: 0.0106 REMARK 3 L33: 0.0208 L12: -0.0188 REMARK 3 L13: -0.0020 L23: 0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0523 S13: 0.0069 REMARK 3 S21: -0.0550 S22: -0.0011 S23: 0.0060 REMARK 3 S31: -0.0572 S32: -0.0463 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 338:483) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4964 42.9556 16.7822 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0511 REMARK 3 T33: 0.0889 T12: -0.0466 REMARK 3 T13: 0.0236 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.0926 L22: 0.0575 REMARK 3 L33: 0.0843 L12: 0.0257 REMARK 3 L13: -0.0198 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0346 S13: 0.0815 REMARK 3 S21: -0.0171 S22: 0.0088 S23: -0.0124 REMARK 3 S31: -0.1228 S32: 0.0178 S33: -0.0115 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 484:570) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0544 42.2015 15.3402 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.0865 REMARK 3 T33: 0.1095 T12: -0.0392 REMARK 3 T13: 0.0296 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.0128 L22: 0.0026 REMARK 3 L33: 0.0108 L12: 0.0023 REMARK 3 L13: -0.0043 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0234 S13: 0.0225 REMARK 3 S21: -0.0069 S22: 0.0144 S23: -0.0096 REMARK 3 S31: -0.0153 S32: 0.0172 S33: -0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.187 REMARK 200 RESOLUTION RANGE LOW (A) : 29.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.49 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM POTASSIUM TARTRATE, 0.1 M REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.13333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.60000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 232.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.53333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 186.13333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 232.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 139.60000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 979 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 -7.20 83.55 REMARK 500 GLU A 142 -28.42 -142.71 REMARK 500 VAL A 198 -70.47 -91.24 REMARK 500 ALA A 204 -44.31 -135.25 REMARK 500 VAL A 335 46.73 -105.49 REMARK 500 ARG A 445 -158.38 -133.18 REMARK 500 ASN A 507 81.16 -167.38 REMARK 500 ASN A 532 -177.22 174.89 REMARK 500 ASP A 533 -158.83 -122.25 REMARK 500 SER A 540 -56.55 -120.39 REMARK 500 ASP A 567 89.38 -69.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 118 NE2 93.7 REMARK 620 3 ASP A 137 OD2 98.4 99.8 REMARK 620 4 ASP A 137 OD1 154.6 93.0 56.2 REMARK 620 5 ASP A 338 OD2 103.0 87.8 156.8 101.8 REMARK 620 6 HOH A 943 O 92.3 173.3 82.2 82.8 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 322 O REMARK 620 2 ARG A 324 O 89.4 REMARK 620 3 VAL A 327 O 90.7 69.2 REMARK 620 4 HOH A 988 O 63.4 133.6 74.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 604 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 565 O REMARK 620 2 THR A 565 OG1 60.6 REMARK 620 3 HOH A 726 O 65.5 69.1 REMARK 620 4 HOH A 993 O 77.7 129.0 67.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VEN RELATED DB: PDB REMARK 900 TOBZ REMARK 900 RELATED ID: 3VER RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH CARBAMOYL ADENYLATE INTERMEDIATE REMARK 900 RELATED ID: 3VES RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH AMPCPP AND CARBAMOYL PHOSPHATE REMARK 900 RELATED ID: 3VET RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH TOBRAMYCIN, CARBAMOYL PHOSPHATE AND ADP REMARK 900 RELATED ID: 3VEW RELATED DB: PDB REMARK 900 TOBZ IN COMPLEX WITH ADP REMARK 900 RELATED ID: 3VEX RELATED DB: PDB REMARK 900 TOBZ H14N VARIANT IN COMPLEX WITH CARBAMOYL ADENYLATE INTERMEDIATE REMARK 900 RELATED ID: 3VEZ RELATED DB: PDB REMARK 900 TOBZ K443A VARIANT IN COMPLEX WITH ATP, ADP AND CARBAMOYL PHOSPHATE REMARK 900 RELATED ID: 3VF2 RELATED DB: PDB REMARK 900 TOBZ M473I VARIANT IN COMPLEX WITH CARBAMOYL PHOSPHATE AND ADP REMARK 900 RELATED ID: 3VF4 RELATED DB: PDB REMARK 900 TOBZ S530A VARIANT IN COMPLEX WITH CARBAMOYL PHOSPHATE AND ADP DBREF 3VEO A 1 570 UNP Q70IY1 Q70IY1_STRSD 1 570 SEQADV 3VEO HIS A -5 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO HIS A -4 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO HIS A -3 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO HIS A -2 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO HIS A -1 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO HIS A 0 UNP Q70IY1 EXPRESSION TAG SEQADV 3VEO LEU A 35 UNP Q70IY1 PHE 35 ENGINEERED MUTATION SEQRES 1 A 576 HIS HIS HIS HIS HIS HIS MET ARG VAL LEU GLY LEU ASN SEQRES 2 A 576 GLY TRP PRO ARG ASP PHE HIS ASP ALA SER ALA ALA LEU SEQRES 3 A 576 LEU VAL ASP GLY ARG ILE ALA ALA PHE ALA GLU GLU GLU SEQRES 4 A 576 ARG LEU THR ARG LYS LYS HIS GLY TYR ASN THR ALA PRO SEQRES 5 A 576 VAL GLN ALA ALA ALA PHE CYS LEU ALA GLN ALA GLY LEU SEQRES 6 A 576 THR VAL ASP ASP LEU ASP ALA VAL ALA PHE GLY TRP ASP SEQRES 7 A 576 LEU PRO ALA MET TYR ARG GLU ARG LEU GLY GLY TRP PRO SEQRES 8 A 576 HIS SER ASP SER GLU ALA LEU ASP ILE LEU LEU PRO ARG SEQRES 9 A 576 ASP VAL PHE PRO ARG ARG THR ASP PRO PRO LEU HIS PHE SEQRES 10 A 576 VAL GLN HIS HIS LEU ALA HIS ALA ALA SER ALA TYR TYR SEQRES 11 A 576 PHE SER GLY GLU ASP ARG GLY ALA VAL LEU ILE VAL ASP SEQRES 12 A 576 GLY GLN GLY GLU GLU GLU CYS VAL THR LEU ALA HIS ALA SEQRES 13 A 576 GLU GLY GLY LYS ILE THR VAL LEU ASP THR VAL PRO GLY SEQRES 14 A 576 ALA TRP SER LEU GLY PHE PHE TYR GLU HIS VAL SER GLU SEQRES 15 A 576 TYR THR GLY LEU GLY GLY ASP ASN PRO GLY LYS LEU MET SEQRES 16 A 576 GLY LEU ALA ALA HIS GLY THR THR VAL ASP GLU THR LEU SEQRES 17 A 576 SER ALA PHE ALA PHE ASP SER ASP GLY TYR ARG LEU ASN SEQRES 18 A 576 LEU ILE ASP PRO GLN ALA ARG ASP PRO GLU ASP TRP ASP SEQRES 19 A 576 GLU TYR SER VAL THR GLU ARG ALA TRP PHE ALA HIS LEU SEQRES 20 A 576 GLU ARG ILE TYR ARG LEU PRO PRO ASN GLU PHE VAL ARG SEQRES 21 A 576 ARG TYR ASP PRO ALA LYS GLY ARG VAL VAL ARG ASP THR SEQRES 22 A 576 ARG ARG ASP PRO TYR GLU TYR ARG ASP LEU ALA ALA THR SEQRES 23 A 576 ALA GLN ALA ALA LEU GLU ARG ALA VAL PHE GLY LEU ALA SEQRES 24 A 576 ASP SER VAL LEU ALA ARG THR GLY GLU ARG THR LEU PHE SEQRES 25 A 576 VAL ALA GLY GLY VAL GLY LEU ASN ALA THR MET ASN GLY SEQRES 26 A 576 LYS LEU LEU THR ARG SER THR VAL ASP LYS MET PHE VAL SEQRES 27 A 576 PRO PRO VAL ALA SER ASP ILE GLY VAL SER LEU GLY ALA SEQRES 28 A 576 ALA ALA ALA VAL ALA VAL GLU LEU GLY ASP ARG ILE ALA SEQRES 29 A 576 PRO MET GLY ASP THR ALA ALA TRP GLY PRO GLU PHE SER SEQRES 30 A 576 PRO ASP GLN VAL ARG ALA ALA LEU ASP ARG THR GLY LEU SEQRES 31 A 576 ALA TYR ARG GLU PRO ALA ASN LEU GLU ARG GLU VAL ALA SEQRES 32 A 576 ALA LEU ILE ALA SER GLY LYS VAL VAL GLY TRP ALA GLN SEQRES 33 A 576 GLY ARG GLY GLU VAL GLY PRO ARG ALA LEU GLY GLN ARG SEQRES 34 A 576 SER LEU LEU GLY SER ALA HIS SER PRO THR MET ARG ASP SEQRES 35 A 576 HIS ILE ASN LEU ARG VAL LYS ASP ARG GLU TRP TRP ARG SEQRES 36 A 576 PRO PHE ALA PRO SER MET LEU ARG SER VAL SER ASP GLN SEQRES 37 A 576 VAL LEU GLU VAL ASP ALA ASP PHE PRO TYR MET ILE MET SEQRES 38 A 576 THR THR LYS VAL ARG ALA ALA TYR ALA GLU ARG LEU PRO SEQRES 39 A 576 SER VAL VAL HIS GLU ASP TRP SER THR ARG PRO GLN THR SEQRES 40 A 576 VAL THR GLU ALA SER ASN PRO ARG TYR HIS ARG MET LEU SEQRES 41 A 576 THR GLU LEU GLY ASP LEU VAL GLY ASP PRO VAL CYS LEU SEQRES 42 A 576 ASN THR SER PHE ASN ASP ARG GLY GLU PRO ILE VAL SER SEQRES 43 A 576 SER PRO ALA ASP ALA LEU LEU THR PHE SER ARG LEU PRO SEQRES 44 A 576 ILE ASP ALA LEU ALA VAL GLY PRO TYR LEU VAL THR LYS SEQRES 45 A 576 ASP LEU ARG HIS HET CP A 601 8 HET FE2 A 602 1 HET K A 603 1 HET K A 604 1 HET EDO A 605 4 HETNAM CP PHOSPHORIC ACID MONO(FORMAMIDE)ESTER HETNAM FE2 FE (II) ION HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CP C H4 N O5 P FORMUL 3 FE2 FE 2+ FORMUL 4 K 2(K 1+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *420(H2 O) HELIX 1 1 GLU A 32 ARG A 37 1 6 HELIX 2 2 PRO A 46 GLY A 58 1 13 HELIX 3 3 THR A 60 LEU A 64 5 5 HELIX 4 4 ASP A 72 LEU A 81 1 10 HELIX 5 5 SER A 87 LEU A 96 1 10 HELIX 6 6 GLN A 113 TYR A 124 1 12 HELIX 7 7 SER A 166 THR A 178 1 13 HELIX 8 8 ASN A 184 ALA A 193 1 10 HELIX 9 9 GLU A 229 TYR A 245 1 17 HELIX 10 10 ASP A 270 GLU A 273 5 4 HELIX 11 11 TYR A 274 GLY A 301 1 28 HELIX 12 12 GLY A 309 LEU A 313 5 5 HELIX 13 13 ASN A 314 ARG A 324 1 11 HELIX 14 14 ILE A 339 LEU A 353 1 15 HELIX 15 15 SER A 371 GLY A 383 1 13 HELIX 16 16 ASN A 391 SER A 402 1 12 HELIX 17 17 THR A 433 ARG A 441 1 9 HELIX 18 18 ARG A 457 LEU A 464 1 8 HELIX 19 19 ARG A 480 ALA A 484 5 5 HELIX 20 20 ASN A 507 GLY A 522 1 16 HELIX 21 21 SER A 541 LEU A 552 1 12 SHEET 1 A 5 ARG A 25 GLU A 31 0 SHEET 2 A 5 SER A 17 VAL A 22 -1 N LEU A 20 O ALA A 28 SHEET 3 A 5 ARG A 2 ASN A 7 -1 N GLY A 5 O ALA A 19 SHEET 4 A 5 ALA A 66 PHE A 69 1 O ALA A 68 N LEU A 6 SHEET 5 A 5 LEU A 109 PHE A 111 1 O HIS A 110 N PHE A 69 SHEET 1 B 5 LYS A 154 PRO A 162 0 SHEET 2 B 5 GLU A 143 GLU A 151 -1 N LEU A 147 O LEU A 158 SHEET 3 B 5 ARG A 130 VAL A 136 -1 N VAL A 133 O ALA A 148 SHEET 4 B 5 THR A 304 ALA A 308 1 O PHE A 306 N ALA A 132 SHEET 5 B 5 LYS A 329 PHE A 331 1 O LYS A 329 N LEU A 305 SHEET 1 C 2 PHE A 205 ASP A 208 0 SHEET 2 C 2 GLY A 211 LEU A 214 -1 O ARG A 213 N ALA A 206 SHEET 1 D 2 PHE A 252 ASP A 257 0 SHEET 2 D 2 ARG A 262 THR A 267 -1 O ARG A 262 N ASP A 257 SHEET 1 E 7 GLN A 500 VAL A 502 0 SHEET 2 E 7 PRO A 453 LEU A 456 1 N MET A 455 O VAL A 502 SHEET 3 E 7 VAL A 525 SER A 530 -1 O CYS A 526 N SER A 454 SHEET 4 E 7 ARG A 423 SER A 428 -1 N LEU A 425 O THR A 529 SHEET 5 E 7 VAL A 406 ALA A 409 -1 N VAL A 406 O LEU A 426 SHEET 6 E 7 ALA A 556 VAL A 559 1 O ALA A 558 N GLY A 407 SHEET 7 E 7 TYR A 562 THR A 565 -1 O VAL A 564 N LEU A 557 SHEET 1 F 2 THR A 477 LYS A 478 0 SHEET 2 F 2 SER A 496 THR A 497 -1 O THR A 497 N THR A 477 LINK NE2 HIS A 114 FE FE2 A 602 1555 1555 2.08 LINK NE2 HIS A 118 FE FE2 A 602 1555 1555 2.14 LINK OD2 ASP A 137 FE FE2 A 602 1555 1555 2.18 LINK OD1 ASP A 137 FE FE2 A 602 1555 1555 2.47 LINK O LEU A 322 K K A 603 1555 1555 3.05 LINK O ARG A 324 K K A 603 1555 1555 3.09 LINK O VAL A 327 K K A 603 1555 1555 2.84 LINK OD2 ASP A 338 FE FE2 A 602 1555 1555 2.11 LINK O THR A 565 K K A 604 1555 1555 3.20 LINK OG1 THR A 565 K K A 604 1555 1555 3.35 LINK FE FE2 A 602 O HOH A 943 1555 1555 2.23 LINK K K A 603 O HOH A 988 1555 1555 3.35 LINK K K A 604 O HOH A 726 1555 1555 3.22 LINK K K A 604 O HOH A 993 1555 1555 3.26 SITE 1 AC1 12 ARG A 418 ALA A 419 MET A 473 ARG A 498 SITE 2 AC1 12 ASN A 528 THR A 529 SER A 530 HOH A 873 SITE 3 AC1 12 HOH A 874 HOH A 875 HOH A 920 HOH A1044 SITE 1 AC2 5 HIS A 114 HIS A 118 ASP A 137 ASP A 338 SITE 2 AC2 5 HOH A 943 SITE 1 AC3 4 LEU A 322 THR A 323 ARG A 324 VAL A 327 SITE 1 AC4 3 THR A 565 ASP A 567 ARG A 569 SITE 1 AC5 6 GLU A 369 PHE A 370 ALA A 409 GLY A 411 SITE 2 AC5 6 GLY A 560 HOH A 966 CRYST1 98.200 98.200 279.200 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010183 0.005879 0.000000 0.00000 SCALE2 0.000000 0.011759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003582 0.00000