HEADER FLUORESCENT PROTEIN 07-NOV-11 3VK1 TITLE GREEN-FLUORESCENT VARIANT OF THE NON-FLUORESCENT CHROMOPROTEIN RTMS5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE NON-FLUORESCENT CHROMOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-FLUORESCENT POCILLOPORIN, RTMS 5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MONTIPORA EFFLORESCENS; SOURCE 3 ORGANISM_COMMON: CORAL; SOURCE 4 ORGANISM_TAXID: 105610; SOURCE 5 GENE: RTMS5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NOVA BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE10BN KEYWDS GFP, ANTHOZOA, BETA CAN, BETA BARREL, FLUORESCENT PROTEIN, PIGMENT KEYWDS 2 PROTEIN, PIGMENT, POCILLOPORIN, CHROMOPROTEIN, LUMINESCENT PROTEIN, KEYWDS 3 FLUOROPHORE, CHROMOPHORE, ACYLIMINE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BATTAD,D.A.K.TRAORE,M.WILCE,M.BYRES,J.ROSSJOHN,R.J.DEVENISH, AUTHOR 2 M.PRESCOTT REVDAT 5 15-NOV-23 3VK1 1 REMARK LINK ATOM REVDAT 4 08-NOV-23 3VK1 1 REMARK SEQADV LINK REVDAT 3 02-NOV-16 3VK1 1 AUTHOR REVDAT 2 31-OCT-12 3VK1 1 JRNL REVDAT 1 06-JUN-12 3VK1 0 JRNL AUTH J.M.BATTAD,D.A.TRAORE,E.BYRES,J.ROSSJOHN,R.J.DEVENISH, JRNL AUTH 2 S.OLSEN,M.C.WILCE,M.PRESCOTT JRNL TITL A GREEN FLUORESCENT PROTEIN CONTAINING A QFG TRI-PEPTIDE JRNL TITL 2 CHROMOPHORE: OPTICAL PROPERTIES AND X-RAY CRYSTAL STRUCTURE. JRNL REF PLOS ONE V. 7 47331 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23071789 JRNL DOI 10.1371/JOURNAL.PONE.0047331 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : -2.31000 REMARK 3 B33 (A**2) : 4.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1767 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2394 ; 1.981 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 7.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.634 ;24.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;15.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 9.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1375 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 1.142 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1742 ; 1.958 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 689 ; 3.078 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 652 ; 4.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -18.530 36.429 19.994 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1640 REMARK 3 T33: 0.1074 T12: -0.0268 REMARK 3 T13: 0.0706 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.5330 L22: 2.7763 REMARK 3 L33: 10.2325 L12: -1.7213 REMARK 3 L13: 0.5789 L23: 2.2490 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: -0.3098 S13: -0.1860 REMARK 3 S21: 0.2114 S22: 0.5543 S23: 0.1336 REMARK 3 S31: -0.1207 S32: 0.6215 S33: -0.3735 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -8.611 62.779 9.721 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.1924 REMARK 3 T33: 0.5563 T12: -0.1820 REMARK 3 T13: 0.3010 T23: -0.3212 REMARK 3 L TENSOR REMARK 3 L11: 7.9864 L22: 14.5613 REMARK 3 L33: 21.5869 L12: 10.7838 REMARK 3 L13: 13.1302 L23: 17.7292 REMARK 3 S TENSOR REMARK 3 S11: 0.2859 S12: -0.1705 S13: -0.1097 REMARK 3 S21: 0.3024 S22: -0.1648 S23: -0.1595 REMARK 3 S31: 0.3734 S32: -0.2806 S33: -0.1211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -26.348 51.929 26.215 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.4440 REMARK 3 T33: 0.3489 T12: 0.1004 REMARK 3 T13: 0.1315 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.3041 L22: 6.2288 REMARK 3 L33: 6.2675 L12: -2.5182 REMARK 3 L13: -1.7633 L23: 1.6567 REMARK 3 S TENSOR REMARK 3 S11: -0.1364 S12: -0.1729 S13: -0.0668 REMARK 3 S21: 0.3869 S22: 0.1021 S23: 0.1970 REMARK 3 S31: -0.5349 S32: -0.1692 S33: 0.0342 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -23.549 40.164 13.048 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.1412 REMARK 3 T33: 0.2149 T12: -0.0142 REMARK 3 T13: 0.0608 T23: 0.0646 REMARK 3 L TENSOR REMARK 3 L11: 2.5416 L22: 1.9323 REMARK 3 L33: 3.5628 L12: -0.3667 REMARK 3 L13: 0.0805 L23: 0.9715 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.1145 S13: 0.0426 REMARK 3 S21: 0.2020 S22: -0.1165 S23: 0.3003 REMARK 3 S31: 0.0665 S32: -0.5508 S33: 0.0924 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -15.230 54.716 22.723 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: 0.4653 REMARK 3 T33: 0.2785 T12: -0.0775 REMARK 3 T13: 0.1388 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.6557 L22: 2.3563 REMARK 3 L33: 0.9700 L12: 0.5355 REMARK 3 L13: -0.6284 L23: -0.1643 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: -0.1797 S13: 0.0319 REMARK 3 S21: 0.4851 S22: -0.1062 S23: 0.0021 REMARK 3 S31: 0.0435 S32: -0.1749 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -13.162 44.684 12.729 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0709 REMARK 3 T33: 0.1025 T12: -0.0002 REMARK 3 T13: 0.0467 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.7504 L22: 1.8307 REMARK 3 L33: 1.5350 L12: 0.5828 REMARK 3 L13: 0.0660 L23: 0.0929 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: -0.2534 S13: 0.0796 REMARK 3 S21: 0.2034 S22: 0.0095 S23: 0.1559 REMARK 3 S31: 0.0267 S32: -0.2016 S33: -0.1089 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -8.722 46.566 25.669 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2160 REMARK 3 T33: 0.2441 T12: 0.0088 REMARK 3 T13: 0.0918 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 8.5457 L22: 2.1205 REMARK 3 L33: 2.5458 L12: 4.1154 REMARK 3 L13: 1.5658 L23: 0.2339 REMARK 3 S TENSOR REMARK 3 S11: 0.4276 S12: -0.6198 S13: -0.4856 REMARK 3 S21: 0.3140 S22: -0.2549 S23: -0.1938 REMARK 3 S31: -0.1517 S32: -0.1552 S33: -0.1727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3VK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000095141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956600 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 36.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: 1MOU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.36M KI, 0.2M TRIS, PH 8.5, 21% PEG REMARK 280 3350, 25% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.45500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.45500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.45500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.12000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 93.12000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 67 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 236 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 THR A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 ARG A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ARG A 36 CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 GLN A 114 CG CD OE1 NE2 REMARK 470 LYS A 188 CD CE NZ REMARK 470 LYS A 198 CD CE NZ REMARK 470 ILE A 216 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 309 O HOH A 356 1.53 REMARK 500 O3 QFG A 66 N SER A 69 1.54 REMARK 500 O HOH A 319 O HOH A 359 2.11 REMARK 500 NE2 HIS A 121 O HOH A 305 2.18 REMARK 500 O HOH A 289 O HOH A 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 121 CA - CB - CG ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 72 57.48 -95.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VIC RELATED DB: PDB REMARK 900 GREEN-FLUORESCENT VARIANT OF RTMS5 REMARK 900 RELATED ID: 1MOU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE RTMS5 REMARK 900 RELATED ID: 1MOV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RTMS5 H146S REMARK 900 RELATED ID: 2ARL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RTMS5 H146S AT PH 3.5 REMARK 900 RELATED ID: 2P4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RTMS5 H146S AT HIGH PH REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE TYR 67 HAS BEEN MUTATED TO PHE 67. RESIDUES GLN 66, PHE 67 REMARK 999 AND GLY 68 CONSTITUTE THE CHROMOPHORE QFG 66. DBREF 3VK1 A 5 225 UNP P83690 NFCP_MONEF 1 221 SEQADV 3VK1 MET A -14 UNP P83690 EXPRESSION TAG SEQADV 3VK1 ARG A -13 UNP P83690 EXPRESSION TAG SEQADV 3VK1 GLY A -12 UNP P83690 EXPRESSION TAG SEQADV 3VK1 SER A -11 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -10 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -9 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -8 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -7 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -6 UNP P83690 EXPRESSION TAG SEQADV 3VK1 HIS A -5 UNP P83690 EXPRESSION TAG SEQADV 3VK1 THR A -4 UNP P83690 EXPRESSION TAG SEQADV 3VK1 ASP A -3 UNP P83690 EXPRESSION TAG SEQADV 3VK1 PRO A -2 UNP P83690 EXPRESSION TAG SEQADV 3VK1 SER A -1 UNP P83690 EXPRESSION TAG SEQADV 3VK1 SER A 0 UNP P83690 EXPRESSION TAG SEQADV 3VK1 ARG A 1 UNP P83690 EXPRESSION TAG SEQADV 3VK1 SER A 2 UNP P83690 EXPRESSION TAG SEQADV 3VK1 LYS A 3 UNP P83690 EXPRESSION TAG SEQADV 3VK1 THR A 4 UNP P83690 EXPRESSION TAG SEQADV 3VK1 QFG A 66 UNP P83690 GLN 62 CHROMOPHORE SEQADV 3VK1 QFG A 66 UNP P83690 TYR 63 CHROMOPHORE SEQADV 3VK1 QFG A 66 UNP P83690 GLY 64 CHROMOPHORE SEQADV 3VK1 SER A 146 UNP P83690 HIS 142 ENGINEERED MUTATION SEQRES 1 A 238 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 238 SER SER ARG SER LYS THR MET SER VAL ILE ALA THR GLN SEQRES 3 A 238 MET THR TYR LYS VAL TYR MET SER GLY THR VAL ASN GLY SEQRES 4 A 238 HIS TYR PHE GLU VAL GLU GLY ASP GLY LYS GLY ARG PRO SEQRES 5 A 238 TYR GLU GLY GLU GLN THR VAL LYS LEU THR VAL THR LYS SEQRES 6 A 238 GLY GLY PRO LEU PRO PHE ALA TRP ASP ILE LEU SER PRO SEQRES 7 A 238 GLN CYS QFG SER ILE PRO PHE THR LYS TYR PRO GLU ASP SEQRES 8 A 238 ILE PRO ASP TYR VAL LYS GLN SER PHE PRO GLU GLY PHE SEQRES 9 A 238 THR TRP GLU ARG ILE MET ASN PHE GLU ASP GLY ALA VAL SEQRES 10 A 238 CYS THR VAL SER ASN ASP SER SER ILE GLN GLY ASN CYS SEQRES 11 A 238 PHE THR TYR HIS VAL LYS PHE SER GLY LEU ASN PHE PRO SEQRES 12 A 238 PRO ASN GLY PRO VAL MET GLN LYS LYS THR GLN GLY TRP SEQRES 13 A 238 GLU PRO SER SER GLU ARG LEU PHE ALA ARG GLY GLY MET SEQRES 14 A 238 LEU ILE GLY ASN ASN PHE MET ALA LEU LYS LEU GLU GLY SEQRES 15 A 238 GLY GLY HIS TYR LEU CYS GLU PHE LYS THR THR TYR LYS SEQRES 16 A 238 ALA LYS LYS PRO VAL LYS MET PRO GLY TYR HIS TYR VAL SEQRES 17 A 238 ASP ARG LYS LEU ASP VAL THR ASN HIS ASN LYS ASP TYR SEQRES 18 A 238 THR SER VAL GLU GLN CYS GLU ILE SER ILE ALA ARG LYS SEQRES 19 A 238 PRO VAL VAL ALA MODRES 3VK1 QFG A 66 GLN MODRES 3VK1 QFG A 66 PHE MODRES 3VK1 QFG A 66 GLY HET QFG A 66 23 HET IOD A 226 1 HET CL A 227 1 HET CL A 228 1 HET CL A 229 1 HETNAM QFG {(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE- HETNAM 2 QFG 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETSYN QFG CHROMOPHORE (GLN-PHE-GLY) FORMUL 1 QFG C16 H16 N4 O4 FORMUL 2 IOD I 1- FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *135(H2 O) HELIX 1 1 ALA A 57 CYS A 65 5 9 HELIX 2 2 ASP A 81 SER A 86 1 6 SHEET 1 A13 THR A 140 TRP A 143 0 SHEET 2 A13 MET A 156 LEU A 167 -1 O LYS A 166 N GLY A 142 SHEET 3 A13 HIS A 172 ALA A 183 -1 O TYR A 181 N LEU A 157 SHEET 4 A13 PHE A 91 PHE A 99 -1 N THR A 92 O LYS A 182 SHEET 5 A13 VAL A 104 GLN A 114 -1 O VAL A 107 N ARG A 95 SHEET 6 A13 CYS A 117 LEU A 127 -1 O SER A 125 N THR A 106 SHEET 7 A13 MET A 12 VAL A 22 1 N TYR A 17 O VAL A 122 SHEET 8 A13 HIS A 25 GLY A 35 -1 O GLY A 33 N TYR A 14 SHEET 9 A13 GLU A 41 LYS A 50 -1 O THR A 47 N GLU A 30 SHEET 10 A13 SER A 210 ARG A 220 -1 O VAL A 211 N LEU A 46 SHEET 11 A13 HIS A 193 HIS A 204 -1 N ASN A 203 O GLU A 212 SHEET 12 A13 SER A 146 ARG A 153 -1 N LEU A 150 O HIS A 193 SHEET 13 A13 MET A 156 LEU A 167 -1 O ILE A 158 N PHE A 151 LINK C CYS A 65 N1 QFG A 66 1555 1555 1.27 LINK C3 QFG A 66 N SER A 69 1555 1555 1.26 CISPEP 1 GLY A 52 PRO A 53 0 -4.82 CISPEP 2 PHE A 87 PRO A 88 0 8.94 SITE 1 AC1 1 ASN A 205 SITE 1 AC2 1 SER A 146 SITE 1 AC3 1 LYS A 182 SITE 1 AC4 1 GLY A 155 CRYST1 93.120 93.120 76.910 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013002 0.00000