HEADER HYDROLASE 09-DEC-11 3VM7 TITLE STRUCTURE OF AN ALPHA-AMYLASE FROM MALBRANCHEA CINNAMOMEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MALBRANCHEA CINNAMOMEA; SOURCE 3 ORGANISM_TAXID: 5041 KEYWDS MALBRANCHEA CINNAMOMEA C -AMYLASE CMODELS, PROTEIN CONFORMATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHOU,S.Q.HU,Y.ZHOU,P.HAN,S.Q.YANG,Z.Q.JIANG REVDAT 3 29-JUL-20 3VM7 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 05-JUN-13 3VM7 1 JRNL REVDAT 1 29-MAY-13 3VM7 0 JRNL AUTH P.HAN,P.ZHOU,S.HU,S.YANG,Q.YAN,Z.Q.JIANG JRNL TITL A NOVEL MULTIFUNCTIONAL ALPHA-AMYLASE FROM THE THERMOPHILIC JRNL TITL 2 FUNGUS MALBRANCHEA CINNAMOMEA: BIOCHEMICAL CHARACTERIZATION JRNL TITL 3 AND THREE-DIMENSIONAL STRUCTURE. JRNL REF APPL BIOCHEM BIOTECHNOL. V. 170 420 2013 JRNL REFN ISSN 0273-2289 JRNL PMID 23536251 JRNL DOI 10.1007/S12010-013-0198-Y REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 4.710 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3801 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5204 ; 1.419 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 6.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;35.346 ;24.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;15.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3010 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 0.485 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3769 ; 0.957 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 1.557 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1435 ; 2.464 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 55.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.06500 REMARK 200 R SYM FOR SHELL (I) : 0.06500 REMARK 200 FOR SHELL : 0.078 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 30% W V-1 PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 PHE A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 PHE A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 ALA A 21 REMARK 465 ASN A 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 40 -60.21 -94.86 REMARK 500 SER A 461 -164.12 -129.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 141 OD1 REMARK 620 2 GLU A 181 O 154.6 REMARK 620 3 ASP A 194 OD2 121.8 80.5 REMARK 620 4 ASP A 194 OD1 76.7 117.2 49.9 REMARK 620 5 HIS A 229 O 76.6 80.4 160.9 141.5 REMARK 620 6 HOH A 612 O 76.3 126.4 69.8 75.0 124.0 REMARK 620 7 HOH A 648 O 90.4 76.3 90.9 69.8 83.2 144.3 REMARK 620 8 HOH A 680 O 117.3 69.5 91.9 134.6 82.7 68.2 144.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3VM7 A 1 492 PDB 3VM7 3VM7 1 492 SEQRES 1 A 492 MET VAL SER THR ALA LEU PHE LEU LEU ALA ALA ALA ALA SEQRES 2 A 492 GLY SER ALA ARG PHE ALA LYS ALA ALA THR PRO ASP GLU SEQRES 3 A 492 TRP ARG SER ARG SER ILE TYR GLN VAL LEU THR ASP ARG SEQRES 4 A 492 PHE ALA ARG GLY ASP GLY SER PRO ASP ALA PRO CYS ASP SEQRES 5 A 492 THR GLY ALA ARG LYS TYR CYS GLY GLY ASN TYR ARG GLY SEQRES 6 A 492 LEU ILE SER GLN LEU ASP TYR ILE GLN GLY MET GLY PHE SEQRES 7 A 492 ASP SER VAL TRP ILE SER PRO ILE THR LYS GLN PHE GLU SEQRES 8 A 492 ASP ASP TRP ASN GLY ALA PRO TYR HIS GLY TYR TRP GLN SEQRES 9 A 492 THR ASP LEU TYR ALA LEU ASN GLU HIS PHE GLY THR GLU SEQRES 10 A 492 GLU ASP LEU ARG ALA LEU ALA ASP GLU LEU HIS ALA ARG SEQRES 11 A 492 GLY MET PHE LEU MET VAL ASP VAL VAL ILE ASN HIS ASN SEQRES 12 A 492 GLY TRP PRO GLY ASP ALA ALA SER ILE ASP TYR SER GLN SEQRES 13 A 492 PHE ASN PRO PHE ASN SER SER ASP TYR TYR HIS PRO PRO SEQRES 14 A 492 CYS GLU ILE ASN TYR ASP ASP GLN THR SER VAL GLU GLN SEQRES 15 A 492 CYS TRP LEU TYR THR GLY ALA ASN ALA LEU PRO ASP LEU SEQRES 16 A 492 LYS THR GLU ASP PRO HIS VAL SER GLN VAL HIS ASN ASP SEQRES 17 A 492 TRP ILE ALA ASP LEU VAL SER LYS TYR SER ILE ASP GLY SEQRES 18 A 492 LEU ARG ILE ASP THR THR LYS HIS VAL ASP LYS PRO ALA SEQRES 19 A 492 ILE GLY SER PHE ASN ASP ALA ALA GLY VAL TYR ALA VAL SEQRES 20 A 492 GLY GLU VAL TYR HIS GLY ASP PRO ALA TYR THR CYS PRO SEQRES 21 A 492 TYR GLN ASP TRP VAL ASP GLY VAL LEU ASN PHE PRO VAL SEQRES 22 A 492 TYR TYR PRO LEU ILE ASP ALA PHE LYS SER PRO SER GLY SEQRES 23 A 492 THR MET TRP SER LEU VAL ASP ASN ILE ASN LYS VAL PHE SEQRES 24 A 492 GLN THR CYS ASN ASP PRO ARG LEU LEU GLY THR PHE SER SEQRES 25 A 492 GLU ASN HIS ASP ILE PRO ARG PHE ALA SER TYR THR GLN SEQRES 26 A 492 ASP LEU ALA LEU ALA LYS ASN VAL LEU ALA PHE THR ILE SEQRES 27 A 492 LEU PHE ASP GLY ILE PRO ILE VAL TYR ALA GLY GLN GLU SEQRES 28 A 492 GLN GLN TYR SER GLY ASP SER ASP PRO TYR ASN ARG GLU SEQRES 29 A 492 ALA LEU TRP LEU SER GLY PHE ASN THR ASP ALA PRO LEU SEQRES 30 A 492 TYR LYS HIS ILE ALA ALA CYS ASN ARG ILE ARG SER HIS SEQRES 31 A 492 ALA VAL SER ASN ASP ASP ALA TYR ILE THR THR PRO THR SEQRES 32 A 492 ASP ILE LYS TYR SER ASP ASP HIS THR LEU ALA LEU VAL SEQRES 33 A 492 LYS GLY ALA VAL THR THR VAL LEU THR ASN ALA GLY ALA SEQRES 34 A 492 ASN ALA GLY GLU THR THR VAL THR VAL GLU ALA THR GLY SEQRES 35 A 492 TYR ALA SER GLY GLU GLN VAL THR ASP VAL LEU SER CYS SEQRES 36 A 492 GLU SER ILE ALA ALA SER ASP GLY GLY ARG LEU SER VAL SEQRES 37 A 492 THR LEU ASN GLN GLY LEU PRO ARG VAL PHE PHE PRO THR SEQRES 38 A 492 ASP ALA LEU ALA GLY SER GLY LEU CYS GLU ASN MODRES 3VM7 ASN A 161 ASN GLYCOSYLATION SITE HET CA A 501 1 HET NAG A 502 14 HET GLC A 503 12 HET TRS A 504 8 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 CA CA 2+ FORMUL 3 NAG C8 H15 N O6 FORMUL 4 GLC C6 H12 O6 FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *396(H2 O) HELIX 1 1 THR A 23 ARG A 28 1 6 HELIX 2 2 LEU A 36 ALA A 41 1 6 HELIX 3 3 ASP A 52 ARG A 56 5 5 HELIX 4 4 ASN A 62 GLN A 69 1 8 HELIX 5 5 GLN A 69 MET A 76 1 8 HELIX 6 6 THR A 116 ARG A 130 1 15 HELIX 7 7 ASP A 148 ILE A 152 5 5 HELIX 8 8 ASP A 153 PHE A 157 5 5 HELIX 9 9 SER A 162 TYR A 166 5 5 HELIX 10 10 ASP A 176 CYS A 183 1 8 HELIX 11 11 ASP A 199 SER A 218 1 20 HELIX 12 12 THR A 226 VAL A 230 5 5 HELIX 13 13 ASP A 231 GLY A 243 1 13 HELIX 14 14 ASP A 254 CYS A 259 1 6 HELIX 15 15 PRO A 260 TRP A 264 5 5 HELIX 16 16 ASN A 270 LYS A 282 1 13 HELIX 17 17 MET A 288 CYS A 302 1 15 HELIX 18 18 ASP A 304 LEU A 307 5 4 HELIX 19 19 ARG A 319 THR A 324 1 6 HELIX 20 20 ASP A 326 PHE A 340 1 15 HELIX 21 21 GLY A 349 GLN A 353 5 5 HELIX 22 22 ALA A 365 GLY A 370 5 6 HELIX 23 23 ALA A 375 ASP A 395 1 21 HELIX 24 24 SER A 461 ARG A 465 5 5 HELIX 25 25 ASP A 482 ALA A 485 5 4 SHEET 1 A 8 GLY A 267 VAL A 268 0 SHEET 2 A 8 TYR A 245 GLY A 248 1 N GLY A 248 O GLY A 267 SHEET 3 A 8 GLY A 221 ILE A 224 1 N ILE A 224 O VAL A 247 SHEET 4 A 8 PHE A 133 VAL A 138 1 N VAL A 136 O ARG A 223 SHEET 5 A 8 SER A 80 ILE A 83 1 N VAL A 81 O MET A 135 SHEET 6 A 8 ILE A 32 GLN A 34 1 N TYR A 33 O SER A 80 SHEET 7 A 8 ILE A 343 TYR A 347 1 O PRO A 344 N ILE A 32 SHEET 8 A 8 GLY A 309 PHE A 311 1 N THR A 310 O ILE A 345 SHEET 1 B 2 THR A 87 GLN A 89 0 SHEET 2 B 2 GLN A 104 LEU A 110 -1 O THR A 105 N LYS A 88 SHEET 1 C 6 ASP A 404 SER A 408 0 SHEET 2 C 6 THR A 412 LYS A 417 -1 O ALA A 414 N TYR A 407 SHEET 3 C 6 VAL A 420 THR A 425 -1 O THR A 422 N LEU A 415 SHEET 4 C 6 ARG A 476 PRO A 480 -1 O PHE A 478 N THR A 421 SHEET 5 C 6 GLN A 448 ASP A 451 -1 N THR A 450 O PHE A 479 SHEET 6 C 6 GLU A 456 ALA A 459 -1 O GLU A 456 N ASP A 451 SHEET 1 D 2 GLU A 433 VAL A 438 0 SHEET 2 D 2 LEU A 466 ASN A 471 -1 O LEU A 466 N VAL A 438 SSBOND 1 CYS A 51 CYS A 59 1555 1555 2.06 SSBOND 2 CYS A 170 CYS A 183 1555 1555 2.08 SSBOND 3 CYS A 259 CYS A 302 1555 1555 2.08 SSBOND 4 CYS A 455 CYS A 490 1555 1555 2.06 LINK ND2 ASN A 161 C1 NAG A 502 1555 1555 1.45 LINK OD1 ASN A 141 CA CA A 501 1555 1555 2.40 LINK O GLU A 181 CA CA A 501 1555 1555 2.49 LINK OD2 ASP A 194 CA CA A 501 1555 1555 2.54 LINK OD1 ASP A 194 CA CA A 501 1555 1555 2.62 LINK O HIS A 229 CA CA A 501 1555 1555 2.39 LINK CA CA A 501 O HOH A 612 1555 1555 2.46 LINK CA CA A 501 O HOH A 648 1555 1555 2.45 LINK CA CA A 501 O HOH A 680 1555 1555 2.71 CISPEP 1 ASN A 158 PRO A 159 0 3.70 CISPEP 2 ALA A 189 ASN A 190 0 -2.33 CISPEP 3 ASP A 359 PRO A 360 0 11.16 CRYST1 51.900 84.940 56.410 90.00 105.61 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019268 0.000000 0.005383 0.00000 SCALE2 0.000000 0.011773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018406 0.00000