HEADER TRANSLATION 12-DEC-11 3VMF TITLE ARCHAEAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-1-ALPHA, ELONGATION FACTOR TU, EF-TU; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TRANSLATION TERMINATION FACTOR ARF1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 272557; SOURCE 4 STRAIN: K1; SOURCE 5 GENE: TUF, APE_1844; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 13 ORGANISM_TAXID: 272557; SOURCE 14 STRAIN: K1; SOURCE 15 GENE: PRF1, APE_1988.1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS TRANSLATION TERMINATION, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR K.KOBAYASHI,K.SAITO,R.ISHITANI,K.ITO,O.NUREKI REVDAT 3 08-NOV-23 3VMF 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 3VMF 1 JRNL REVDAT 1 25-JUL-12 3VMF 0 JRNL AUTH K.KOBAYASHI,K.SAITO,R.ISHITANI,K.ITO,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR TRANSLATION TERMINATION BY ARCHAEAL RF1 JRNL TITL 2 AND GTP-BOUND EF1ALPHA COMPLEX JRNL REF NUCLEIC ACIDS RES. V. 40 9319 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22772989 JRNL DOI 10.1093/NAR/GKS660 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 37988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5079 - 5.5404 0.99 2674 155 0.1912 0.2362 REMARK 3 2 5.5404 - 4.3987 1.00 2629 151 0.1622 0.2110 REMARK 3 3 4.3987 - 3.8430 1.00 2616 139 0.1685 0.2187 REMARK 3 4 3.8430 - 3.4917 1.00 2599 145 0.1873 0.2643 REMARK 3 5 3.4917 - 3.2415 1.00 2594 123 0.2095 0.2582 REMARK 3 6 3.2415 - 3.0505 0.99 2600 117 0.2182 0.2750 REMARK 3 7 3.0505 - 2.8977 0.99 2580 125 0.2361 0.3483 REMARK 3 8 2.8977 - 2.7716 0.99 2544 145 0.2378 0.2753 REMARK 3 9 2.7716 - 2.6649 0.99 2567 138 0.2420 0.2986 REMARK 3 10 2.6649 - 2.5729 0.98 2550 126 0.2412 0.3602 REMARK 3 11 2.5729 - 2.4925 0.99 2552 141 0.2517 0.3557 REMARK 3 12 2.4925 - 2.4213 0.98 2522 138 0.2543 0.3183 REMARK 3 13 2.4213 - 2.3575 0.98 2540 128 0.2513 0.3506 REMARK 3 14 2.3575 - 2.3000 0.97 2515 135 0.2663 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.770 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77100 REMARK 3 B22 (A**2) : 6.52190 REMARK 3 B33 (A**2) : -10.29300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04660 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6116 REMARK 3 ANGLE : 1.202 8294 REMARK 3 CHIRALITY : 0.083 955 REMARK 3 PLANARITY : 0.005 1056 REMARK 3 DIHEDRAL : 18.364 2270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 FOR SHELL : 3.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AGJ, 3AGK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 200MM AMMONIUM SULFATE, REMARK 280 10MM L-PROLINE, 100MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.28350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.28350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 431 REMARK 465 VAL A 432 REMARK 465 ASP A 433 REMARK 465 ILE A 434 REMARK 465 LYS A 435 REMARK 465 ALA A 436 REMARK 465 LYS A 437 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 176 REMARK 465 HIS B 177 REMARK 465 LYS B 178 REMARK 465 MET B 179 REMARK 465 GLY B 180 REMARK 465 GLY B 181 REMARK 465 GLN B 182 REMARK 465 SER B 183 REMARK 465 GLN B 184 REMARK 465 ARG B 185 REMARK 465 ARG B 186 REMARK 465 TYR B 187 REMARK 465 THR B 372 REMARK 465 VAL B 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ARG A 48 CZ NH1 NH2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 GLU A 280 CD OE1 OE2 REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 GLU A 290 OE2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLN A 371 CG CD OE1 NE2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 PHE B 132 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 GLU B 288 OE1 OE2 REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 470 LYS B 336 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 232 O HOH B 457 1.83 REMARK 500 NZ LYS B 105 O HOH B 442 1.91 REMARK 500 O HOH A 679 O HOH B 437 1.98 REMARK 500 O MET B 101 O HOH B 432 1.98 REMARK 500 NH2 ARG B 369 O HOH B 426 2.00 REMARK 500 O HOH B 416 O HOH B 433 2.01 REMARK 500 O HOH A 641 O HOH A 642 2.05 REMARK 500 NZ LYS A 318 O HOH A 658 2.09 REMARK 500 O1A GTP A 501 O HOH A 656 2.10 REMARK 500 OG SER A 20 OD2 ASP A 90 2.12 REMARK 500 N GLU A 145 O HOH A 680 2.13 REMARK 500 OG1 THR A 132 O HOH A 638 2.13 REMARK 500 O HOH A 641 O HOH A 646 2.14 REMARK 500 O ALA B 270 NH2 ARG B 280 2.14 REMARK 500 O HOH A 654 O HOH A 668 2.14 REMARK 500 O HOH A 650 O HOH A 678 2.17 REMARK 500 O LEU B 366 O HOH B 409 2.18 REMARK 500 O ALA A 218 O HOH A 628 2.19 REMARK 500 O HOH B 448 O HOH B 454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 159 -56.48 -122.99 REMARK 500 TYR A 283 -0.56 74.20 REMARK 500 SER A 337 -98.43 -140.58 REMARK 500 HIS A 350 -119.40 35.58 REMARK 500 GLU A 374 123.91 -171.27 REMARK 500 ASN A 376 67.15 29.46 REMARK 500 ASN B 238 68.82 -104.25 REMARK 500 ILE B 370 -65.06 -107.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 OG REMARK 620 2 THR A 71 OG1 76.0 REMARK 620 3 GTP A 501 O2B 96.5 171.0 REMARK 620 4 GTP A 501 O2G 149.8 93.9 90.2 REMARK 620 5 GTP A 501 O3B 147.2 134.4 54.1 55.6 REMARK 620 6 HOH A 656 O 103.1 104.9 81.3 107.1 62.1 REMARK 620 7 HOH A 657 O 70.8 84.7 88.3 80.0 116.9 167.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 DBREF 3VMF A 1 437 UNP Q9YAV0 EF1A_AERPE 1 437 DBREF 3VMF B 1 373 UNP Q9YAF1 RF1_AERPE 1 373 SEQADV 3VMF GLY A -2 UNP Q9YAV0 EXPRESSION TAG SEQADV 3VMF SER A -1 UNP Q9YAV0 EXPRESSION TAG SEQADV 3VMF HIS A 0 UNP Q9YAV0 EXPRESSION TAG SEQRES 1 A 440 GLY SER HIS MET ALA GLU LYS PRO HIS MET ASN LEU VAL SEQRES 2 A 440 VAL ILE GLY HIS VAL ASP HIS GLY LYS SER THR LEU VAL SEQRES 3 A 440 GLY HIS LEU LEU TYR ARG LEU GLY TYR ILE GLU GLU LYS SEQRES 4 A 440 LYS LEU LYS GLU LEU GLU GLU GLN ALA LYS SER ARG GLY SEQRES 5 A 440 LYS GLU SER PHE LYS PHE ALA TRP ILE LEU ASP LYS MET SEQRES 6 A 440 LYS GLU GLU ARG GLU ARG GLY ILE THR ILE ASP LEU THR SEQRES 7 A 440 PHE MET LYS PHE GLU THR LYS LYS TYR VAL PHE THR ILE SEQRES 8 A 440 ILE ASP ALA PRO GLY HIS ARG ASP PHE VAL LYS ASN MET SEQRES 9 A 440 ILE THR GLY ALA SER GLN ALA ASP ALA ALA ILE LEU VAL SEQRES 10 A 440 VAL SER ALA ARG LYS GLY GLU PHE GLU ALA GLY MET SER SEQRES 11 A 440 THR GLU GLY GLN THR ARG GLU HIS LEU LEU LEU ALA ARG SEQRES 12 A 440 THR MET GLY ILE GLU GLN ILE ILE VAL ALA VAL ASN LYS SEQRES 13 A 440 MET ASP ALA PRO ASP VAL ASN TYR ASP GLN LYS ARG TYR SEQRES 14 A 440 GLU PHE VAL VAL SER VAL LEU LYS LYS PHE MET LYS GLY SEQRES 15 A 440 LEU GLY TYR GLN VAL ASP LYS ILE PRO PHE ILE PRO VAL SEQRES 16 A 440 SER ALA TRP LYS GLY ASP ASN LEU ILE GLU ARG SER PRO SEQRES 17 A 440 ASN MET PRO TRP TYR ASN GLY PRO THR LEU VAL GLU ALA SEQRES 18 A 440 LEU ASP GLN LEU GLN PRO PRO ALA LYS PRO VAL ASP LYS SEQRES 19 A 440 PRO LEU ARG ILE PRO VAL GLN ASN VAL TYR SER ILE PRO SEQRES 20 A 440 GLY ALA GLY THR VAL PRO VAL GLY ARG VAL GLU THR GLY SEQRES 21 A 440 VAL LEU ARG VAL GLY ASP LYS VAL VAL PHE MET PRO PRO SEQRES 22 A 440 GLY VAL VAL GLY GLU VAL ARG SER ILE GLU MET HIS TYR SEQRES 23 A 440 GLN GLN LEU GLN GLN ALA GLU PRO GLY ASP ASN ILE GLY SEQRES 24 A 440 PHE ALA VAL ARG GLY VAL SER LYS SER ASP ILE LYS ARG SEQRES 25 A 440 GLY ASP VAL ALA GLY HIS LEU ASP LYS PRO PRO THR VAL SEQRES 26 A 440 ALA GLU GLU PHE GLU ALA ARG ILE PHE VAL ILE TRP HIS SEQRES 27 A 440 PRO SER ALA ILE THR VAL GLY TYR THR PRO VAL ILE HIS SEQRES 28 A 440 VAL HIS THR ALA SER VAL SER SER ARG ILE ILE GLU ILE SEQRES 29 A 440 LYS ALA LYS LEU ASP PRO LYS THR GLY GLN VAL VAL GLU SEQRES 30 A 440 GLN ASN PRO GLN PHE LEU LYS ALA GLY ASP ALA ALA ILE SEQRES 31 A 440 VAL ARG PHE LYS PRO VAL LYS PRO LEU VAL VAL GLU LYS SEQRES 32 A 440 PHE SER GLU ILE PRO GLN LEU GLY ARG PHE ALA MET ARG SEQRES 33 A 440 ASP MET ASN ARG THR VAL GLY ILE GLY ILE VAL THR ASP SEQRES 34 A 440 VAL LYS PRO ALA LYS VAL ASP ILE LYS ALA LYS SEQRES 1 B 373 MET SER GLN GLY ARG LEU GLU GLU ARG LEU THR ILE SER SEQRES 2 B 373 LYS ARG GLU LEU ALA ARG LEU LEU LYS GLU LEU LYS LYS SEQRES 3 B 373 TRP SER ALA PRO ALA THR VAL LEU LEU SER LEU TYR ILE SEQRES 4 B 373 PRO PRO GLY ARG PRO LEU SER ASP VAL MET THR LEU LEU SEQRES 5 B 373 ARG GLN GLU TYR SER ILE THR ASP ASN ILE LYS LEU LYS SEQRES 6 B 373 ARG THR ARG GLN ALA VAL LYS ARG ALA LEU SER ALA ALA SEQRES 7 B 373 MET ASP ARG LEU GLN MET LEU THR SER THR PRO PRO ASN SEQRES 8 B 373 GLY LEU VAL LEU PHE CYS GLY GLU ASP MET SER THR GLY SEQRES 9 B 373 LYS PHE GLU CYS PHE MET PHE SER PRO PRO GLU PRO ILE SEQRES 10 B 373 ARG VAL PHE TYR TYR ARG THR ASP LYS ARG PHE ILE THR SEQRES 11 B 373 ASP PHE LEU GLU ASP MET VAL GLU ASP ASN ASN ALA ILE SEQRES 12 B 373 GLY ILE ILE ILE VAL GLU ARG ASP GLN ALA THR ILE GLY SEQRES 13 B 373 LEU LEU LYS GLY ALA ARG LEU GLU VAL LEU LYS GLU LEU SEQRES 14 B 373 GLU GLY PHE VAL PRO GLY LYS HIS LYS MET GLY GLY GLN SEQRES 15 B 373 SER GLN ARG ARG TYR GLU ARG ILE ILE GLU GLN MET VAL SEQRES 16 B 373 ASP GLU PHE PHE LYS LYS VAL GLY GLU GLU ALA SER ASN SEQRES 17 B 373 LEU LEU VAL PRO LEU ALA GLU LYS GLY VAL LEU LYS GLY SEQRES 18 B 373 VAL ILE VAL ALA GLY PRO GLY LEU ALA LYS GLN GLU PHE SEQRES 19 B 373 VAL GLU GLY ASN TYR LEU ASP TYR ARG LEU LYS LYS ILE SEQRES 20 B 373 LEU ALA PRO GLU LEU VAL ASP VAL ALA TYR GLN GLY LEU SEQRES 21 B 373 GLN GLY LEU LYS GLU ALA VAL MET LYS ALA GLU LYS VAL SEQRES 22 B 373 VAL GLU ALA GLN MET TYR ARG ASP ALA VAL ASN ALA MET SEQRES 23 B 373 GLU GLU PHE LYS LEU HIS LEU ALA LYS GLY THR GLY MET SEQRES 24 B 373 ILE VAL TYR GLY GLU LYS ASP VAL GLU ALA ALA LEU GLU SEQRES 25 B 373 MET GLY ALA VAL LYS THR LEU LEU ILE HIS GLU SER ARG SEQRES 26 B 373 GLU ASP LEU GLU GLU TRP VAL GLU LYS ALA LYS SER SER SEQRES 27 B 373 GLY ALA GLN VAL ILE VAL VAL PRO GLU SER LEU ALA GLU SEQRES 28 B 373 ALA GLU TRP PHE LEU LYS THR PHE GLY GLY LEU ALA GLY SEQRES 29 B 373 ILE LEU ARG PHE ARG ILE SER THR VAL HET GTP A 501 32 HET MG A 502 1 HET SO4 A 503 5 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 MG MG 2+ FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *162(H2 O) HELIX 1 1 GLY A 18 LEU A 30 1 13 HELIX 2 2 GLU A 34 ARG A 48 1 15 HELIX 3 3 GLY A 49 LYS A 54 5 6 HELIX 4 4 PHE A 55 ASP A 60 1 6 HELIX 5 5 MET A 62 GLY A 69 1 8 HELIX 6 6 HIS A 94 ASP A 96 5 3 HELIX 7 7 PHE A 97 GLN A 107 1 11 HELIX 8 8 GLY A 120 MET A 126 1 7 HELIX 9 9 GLY A 130 MET A 142 1 13 HELIX 10 10 ASP A 162 LEU A 180 1 19 HELIX 11 11 GLN A 183 ILE A 187 5 5 HELIX 12 12 THR A 214 GLN A 221 1 8 HELIX 13 13 SER A 303 ILE A 307 5 5 HELIX 14 14 ILE A 404 LEU A 407 5 4 HELIX 15 15 SER B 13 LYS B 25 1 13 HELIX 16 16 PRO B 44 THR B 59 1 16 HELIX 17 17 ASP B 60 ILE B 62 5 3 HELIX 18 18 LEU B 64 MET B 84 1 21 HELIX 19 19 THR B 130 GLU B 138 1 9 HELIX 20 20 MET B 194 LYS B 216 1 23 HELIX 21 21 LEU B 229 GLY B 237 1 9 HELIX 22 22 ASP B 241 LYS B 246 1 6 HELIX 23 23 GLN B 258 ALA B 270 1 13 HELIX 24 24 VAL B 273 GLU B 275 5 3 HELIX 25 25 ALA B 276 LYS B 295 1 20 HELIX 26 26 GLY B 303 MET B 313 1 11 HELIX 27 27 ASP B 327 GLY B 339 1 13 HELIX 28 28 GLU B 351 GLY B 360 1 10 SHEET 1 A 6 THR A 75 GLU A 80 0 SHEET 2 A 6 VAL A 85 ASP A 90 -1 O ILE A 88 N MET A 77 SHEET 3 A 6 HIS A 6 ILE A 12 1 N LEU A 9 O ILE A 89 SHEET 4 A 6 ALA A 110 SER A 116 1 O VAL A 114 N ILE A 12 SHEET 5 A 6 GLN A 146 ASN A 152 1 O ALA A 150 N VAL A 115 SHEET 6 A 6 PHE A 189 PRO A 191 1 O ILE A 190 N VAL A 149 SHEET 1 B 7 ILE A 235 PRO A 236 0 SHEET 2 B 7 VAL A 312 HIS A 315 -1 O ALA A 313 N ILE A 235 SHEET 3 B 7 LYS A 264 MET A 268 -1 N MET A 268 O VAL A 312 SHEET 4 B 7 VAL A 272 MET A 281 -1 O VAL A 272 N PHE A 267 SHEET 5 B 7 ASN A 294 ARG A 300 -1 O ARG A 300 N GLU A 275 SHEET 6 B 7 GLY A 247 ARG A 253 -1 N PRO A 250 O PHE A 297 SHEET 7 B 7 ASN A 239 ILE A 243 -1 N ILE A 243 O GLY A 247 SHEET 1 C 5 ILE A 235 PRO A 236 0 SHEET 2 C 5 VAL A 312 HIS A 315 -1 O ALA A 313 N ILE A 235 SHEET 3 C 5 LYS A 264 MET A 268 -1 N MET A 268 O VAL A 312 SHEET 4 C 5 VAL A 272 MET A 281 -1 O VAL A 272 N PHE A 267 SHEET 5 C 5 GLN A 284 LEU A 286 -1 O LEU A 286 N ILE A 279 SHEET 1 D 2 LEU A 259 ARG A 260 0 SHEET 2 D 2 GLN A 288 ALA A 289 -1 O ALA A 289 N LEU A 259 SHEET 1 E 7 VAL A 372 GLN A 375 0 SHEET 2 E 7 ALA A 352 LEU A 365 -1 N LYS A 364 O VAL A 373 SHEET 3 E 7 VAL A 346 VAL A 349 -1 N VAL A 349 O ALA A 352 SHEET 4 E 7 ARG A 409 ASP A 414 -1 O ARG A 413 N VAL A 346 SHEET 5 E 7 ARG A 417 PRO A 429 -1 O VAL A 419 N MET A 412 SHEET 6 E 7 VAL A 322 VAL A 332 -1 N GLU A 327 O ASP A 426 SHEET 7 E 7 LEU A 396 VAL A 397 -1 O LEU A 396 N ALA A 323 SHEET 1 F 5 VAL A 372 GLN A 375 0 SHEET 2 F 5 ALA A 352 LEU A 365 -1 N LYS A 364 O VAL A 373 SHEET 3 F 5 ALA A 385 PRO A 392 -1 O LYS A 391 N ARG A 357 SHEET 4 F 5 VAL A 322 VAL A 332 -1 N PHE A 326 O PHE A 390 SHEET 5 F 5 LEU A 396 VAL A 397 -1 O LEU A 396 N ALA A 323 SHEET 1 G 4 PHE B 106 PHE B 111 0 SHEET 2 G 4 LEU B 93 GLU B 99 -1 N VAL B 94 O PHE B 111 SHEET 3 G 4 LEU B 34 ILE B 39 -1 N ILE B 39 O LEU B 93 SHEET 4 G 4 TYR B 121 ASP B 125 -1 O ARG B 123 N SER B 36 SHEET 1 H 5 ARG B 162 GLU B 170 0 SHEET 2 H 5 GLN B 152 LYS B 159 -1 N ILE B 155 O LEU B 166 SHEET 3 H 5 ALA B 142 VAL B 148 -1 N ILE B 147 O THR B 154 SHEET 4 H 5 LEU B 219 GLY B 226 1 O ILE B 223 N GLY B 144 SHEET 5 H 5 VAL B 253 ASP B 254 1 O VAL B 253 N GLY B 226 SHEET 1 I 4 ILE B 300 TYR B 302 0 SHEET 2 I 4 LEU B 362 LEU B 366 -1 O GLY B 364 N VAL B 301 SHEET 3 I 4 VAL B 316 HIS B 322 -1 N LEU B 320 O ALA B 363 SHEET 4 I 4 GLN B 341 VAL B 345 1 O GLN B 341 N LEU B 319 LINK OG SER A 20 MG MG A 502 1555 1555 2.50 LINK OG1 THR A 71 MG MG A 502 1555 1555 2.45 LINK O2B GTP A 501 MG MG A 502 1555 1555 2.46 LINK O2G GTP A 501 MG MG A 502 1555 1555 2.51 LINK O3B GTP A 501 MG MG A 502 1555 1555 2.99 LINK MG MG A 502 O HOH A 656 1555 1555 2.27 LINK MG MG A 502 O HOH A 657 1555 1555 2.23 CISPEP 1 MET A 268 PRO A 269 0 1.46 SITE 1 AC1 24 VAL A 15 ASP A 16 HIS A 17 GLY A 18 SITE 2 AC1 24 LYS A 19 SER A 20 THR A 21 SER A 52 SITE 3 AC1 24 PHE A 53 ILE A 70 THR A 71 PRO A 92 SITE 4 AC1 24 GLY A 93 ASN A 152 LYS A 153 ASP A 155 SITE 5 AC1 24 SER A 193 ALA A 194 TRP A 195 MG A 502 SITE 6 AC1 24 HOH A 602 HOH A 619 HOH A 656 HOH A 657 SITE 1 AC2 5 SER A 20 THR A 71 GTP A 501 HOH A 656 SITE 2 AC2 5 HOH A 657 SITE 1 AC3 6 ARG A 277 ARG A 300 GLY A 301 HOH A 655 SITE 2 AC3 6 GLU B 188 ARG B 189 CRYST1 176.567 55.169 90.689 90.00 101.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005664 0.000000 0.001164 0.00000 SCALE2 0.000000 0.018126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011257 0.00000