HEADER LIGASE 17-JAN-12 3VNR TITLE CO-CRYSTAL STRUCTURE OF NRPS ADENYLATION PROTEIN CYTC1 WITH TITLE 2 AMINOBUTYRIC ACID AND AMP FROM STREPTOMYCES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NRPS ADENYLATION PROTEIN CYTC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 STRAIN: RK95-74; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACETYL-COA SYNTHETASE-LIKE, ADENYLATION, ATP BINDING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.OKUMURA,M.UEKI,Y.SHIRO,H.OSADA REVDAT 4 06-DEC-23 3VNR 1 REMARK REVDAT 3 08-NOV-23 3VNR 1 REMARK REVDAT 2 22-NOV-17 3VNR 1 REMARK REVDAT 1 23-JAN-13 3VNR 0 JRNL AUTH M.UEKI,H.OKUMURA,H.OSADA JRNL TITL SUBSTRATE RECOGNITION MECHANISM OF NRPS ADENYLATION PROTEIN JRNL TITL 2 FROM STREPTOMYCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1169 - 4.9723 0.98 2742 155 0.1890 0.2090 REMARK 3 2 4.9723 - 3.9484 1.00 2723 131 0.1544 0.1430 REMARK 3 3 3.9484 - 3.4498 1.00 2702 154 0.1756 0.1898 REMARK 3 4 3.4498 - 3.1346 1.00 2650 150 0.1986 0.2264 REMARK 3 5 3.1346 - 2.9101 1.00 2697 140 0.1973 0.2122 REMARK 3 6 2.9101 - 2.7385 1.00 2676 132 0.1949 0.2275 REMARK 3 7 2.7385 - 2.6014 1.00 2666 149 0.2000 0.2140 REMARK 3 8 2.6014 - 2.4882 1.00 2653 155 0.1987 0.2380 REMARK 3 9 2.4882 - 2.3925 1.00 2650 144 0.1922 0.2238 REMARK 3 10 2.3925 - 2.3099 1.00 2660 130 0.1927 0.2280 REMARK 3 11 2.3099 - 2.2377 1.00 2688 129 0.1905 0.2027 REMARK 3 12 2.2377 - 2.1738 1.00 2674 126 0.1871 0.2693 REMARK 3 13 2.1738 - 2.1165 1.00 2642 143 0.1942 0.2279 REMARK 3 14 2.1165 - 2.0649 1.00 2647 162 0.1831 0.1884 REMARK 3 15 2.0649 - 2.0180 1.00 2656 136 0.1898 0.1959 REMARK 3 16 2.0180 - 1.9750 1.00 2639 153 0.1922 0.2247 REMARK 3 17 1.9750 - 1.9355 1.00 2660 139 0.2092 0.2403 REMARK 3 18 1.9355 - 1.8990 1.00 2659 125 0.1985 0.2447 REMARK 3 19 1.8990 - 1.8651 1.00 2635 146 0.2143 0.2710 REMARK 3 20 1.8651 - 1.8335 1.00 2623 133 0.2185 0.2728 REMARK 3 21 1.8335 - 1.8039 1.00 2713 126 0.2169 0.2556 REMARK 3 22 1.8039 - 1.7762 1.00 2651 147 0.2197 0.2521 REMARK 3 23 1.7762 - 1.7500 1.00 2635 151 0.2202 0.2683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3902 REMARK 3 ANGLE : 1.517 5315 REMARK 3 CHIRALITY : 0.107 604 REMARK 3 PLANARITY : 0.008 689 REMARK 3 DIHEDRAL : 12.669 1415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000095275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 74.1260 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : 0.47400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.643 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1AMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULFATE, 24-32% PEG5000 REMARK 280 MONOMETHYL ETHER, 1MM ATP, 100MM HEPES BUFFER, PH 7.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 78.50800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 78.50800 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 78.50800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 78.50800 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 78.50800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 78.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 778 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 826 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 MET A 6 REMARK 465 GLY A 144 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 THR A 147 REMARK 465 GLY A 148 REMARK 465 ALA A 149 REMARK 465 GLY A 165 REMARK 465 THR A 166 REMARK 465 THR A 167 REMARK 465 GLY A 168 REMARK 465 ASN A 169 REMARK 465 THR A 386 REMARK 465 ASP A 387 REMARK 465 GLU A 388 REMARK 465 LYS A 389 REMARK 465 THR A 390 REMARK 465 GLY A 391 REMARK 465 GLU A 392 REMARK 465 GLU A 518 REMARK 465 GLU A 519 REMARK 465 GLU A 520 REMARK 465 VAL A 521 REMARK 465 ALA A 522 REMARK 465 ARG A 523 REMARK 465 SER A 524 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 34 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 -126.87 52.88 REMARK 500 THR A 313 64.69 62.32 REMARK 500 VAL A 314 -64.75 77.69 REMARK 500 ALA A 330 -167.12 -107.77 REMARK 500 ASP A 348 -3.74 -56.73 REMARK 500 PHE A 382 66.90 -119.23 REMARK 500 GLU A 414 -62.68 -95.96 REMARK 500 PRO A 455 -76.99 -23.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABA A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AMU RELATED DB: PDB REMARK 900 RELATED ID: 3E7W RELATED DB: PDB REMARK 900 RELATED ID: 3E7X RELATED DB: PDB REMARK 900 RELATED ID: 3DHV RELATED DB: PDB REMARK 900 RELATED ID: 3FCC RELATED DB: PDB REMARK 900 RELATED ID: 3FCE RELATED DB: PDB REMARK 900 RELATED ID: 3VNQ RELATED DB: PDB REMARK 900 RELATED ID: 3VNS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3VNR A -19 524 PDB 3VNR 3VNR -19 524 SEQRES 1 A 544 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 544 LEU VAL PRO ARG GLY SER HIS MET LEU LEU GLN SER MET SEQRES 3 A 544 THR SER ASP PRO ILE ALA ARG ASN SER ASP LEU VAL SER SEQRES 4 A 544 LEU PHE ARG GLU VAL ALA ALA THR ALA PRO GLU ARG THR SEQRES 5 A 544 ALA LEU SER ALA GLU ASP ASP ARG ILE SER TYR GLY ARG SEQRES 6 A 544 LEU ASP ALA TRP SER ASP ALA VAL ALA ARG THR LEU LEU SEQRES 7 A 544 ALA GLU GLY VAL ARG PRO GLY ASP ARG VAL ALA LEU ARG SEQRES 8 A 544 MET SER PRO GLY ALA GLU ALA ILE VAL ALA ILE LEU ALA SEQRES 9 A 544 ILE LEU LYS CYS GLY ALA ALA TYR VAL PRO VAL ASP LEU SEQRES 10 A 544 ARG ASN PRO VAL SER ARG SER ASP PHE ILE LEU ALA ASP SEQRES 11 A 544 SER GLY ALA SER ALA LEU ILE GLY GLU PRO HIS GLU GLY SEQRES 12 A 544 CYS ALA VAL THR ARG VAL VAL ARG THR ALA ALA VAL ALA SEQRES 13 A 544 GLU CYS LYS ASP ALA GLU PRO GLY PRO VAL THR GLY ALA SEQRES 14 A 544 PRO GLY PRO GLY ALA GLU ASP MET ALA TYR VAL ILE TYR SEQRES 15 A 544 THR SER GLY THR THR GLY ASN PRO LYS GLY VAL PRO VAL SEQRES 16 A 544 ARG HIS ALA ASN VAL LEU ALA LEU LEU ALA GLY ALA PRO SEQRES 17 A 544 SER VAL PHE ASP PHE SER GLY ASP ASP ARG TRP LEU LEU SEQRES 18 A 544 PHE HIS SER LEU SER PHE ASP PHE SER VAL TRP GLU ILE SEQRES 19 A 544 TRP GLY ALA PHE SER THR GLY ALA GLU LEU VAL VAL LEU SEQRES 20 A 544 PRO HIS TRP ALA ALA ARG THR PRO GLU GLN TYR LEU ALA SEQRES 21 A 544 VAL ILE ILE ASP ARG GLY VAL THR VAL ILE ASN GLN THR SEQRES 22 A 544 PRO THR ALA PHE LEU ALA LEU THR GLU ALA ALA VAL ARG SEQRES 23 A 544 GLY GLY ARG ASP VAL SER GLY LEU ARG TYR VAL ILE PHE SEQRES 24 A 544 GLY GLY GLU LYS LEU THR ALA PRO MET LEU ARG PRO TRP SEQRES 25 A 544 ALA LYS ALA PHE GLY LEU ASP ARG PRO ARG LEU VAL ASN SEQRES 26 A 544 GLY TYR GLY ILE THR GLU THR THR VAL PHE THR THR PHE SEQRES 27 A 544 GLU GLU ILE THR GLU ALA TYR LEU ALA GLN ASP ALA SER SEQRES 28 A 544 ILE ILE GLY ARG ALA LEU PRO SER PHE GLY THR ARG VAL SEQRES 29 A 544 VAL GLY ASP ASP GLY ARG ASP VAL ALA PRO GLY GLU THR SEQRES 30 A 544 GLY GLU LEU TRP LEU SER GLY ALA GLN LEU ALA GLU GLY SEQRES 31 A 544 TYR LEU ARG ARG PRO GLU LEU THR ALA GLU LYS PHE PRO SEQRES 32 A 544 GLU VAL THR ASP GLU LYS THR GLY GLU SER VAL ARG TYR SEQRES 33 A 544 TYR ARG THR GLY ASP LEU VAL SER GLU LEU PRO ASP GLY SEQRES 34 A 544 ARG PHE ALA TYR GLU GLY ARG ALA ASP LEU GLN ILE LYS SEQRES 35 A 544 LEU ARG GLY TYR ARG ILE GLU LEU SER ASP ILE GLU THR SEQRES 36 A 544 ALA VAL ARG ARG HIS ASP ASP VAL VAL ASP ALA VAL VAL SEQRES 37 A 544 THR VAL ARG GLU PHE LYS PRO GLY ASP LEU ARG LEU VAL SEQRES 38 A 544 CYS ALA TYR VAL ALA ARG GLU GLY SER ALA THR THR ALA SEQRES 39 A 544 ARG GLU LEU ARG ASN HIS ILE LYS THR LEU LEU PRO ALA SEQRES 40 A 544 TYR MET HIS PRO ALA ARG TYR LEU PRO LEU PRO GLY LEU SEQRES 41 A 544 PRO ARG THR VAL ASN GLY LYS VAL ASP ARG ALA ALA VAL SEQRES 42 A 544 ALA ARG SER TRP GLU GLU GLU VAL ALA ARG SER HET AMP A 601 23 HET ABA A 602 14 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ABA ALPHA-AMINOBUTYRIC ACID FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 ABA C4 H9 N O2 FORMUL 4 HOH *315(H2 O) HELIX 1 1 ASP A 9 ASN A 14 1 6 HELIX 2 2 ASP A 16 ALA A 28 1 13 HELIX 3 3 TYR A 43 GLU A 60 1 18 HELIX 4 4 GLY A 75 CYS A 88 1 14 HELIX 5 5 PRO A 100 GLY A 112 1 13 HELIX 6 6 ARG A 131 CYS A 138 1 8 HELIX 7 7 HIS A 177 ALA A 187 1 11 HELIX 8 8 PRO A 188 VAL A 190 5 3 HELIX 9 9 ASP A 208 THR A 220 1 13 HELIX 10 10 PRO A 228 ALA A 232 5 5 HELIX 11 11 THR A 234 ARG A 245 1 12 HELIX 12 12 THR A 253 GLY A 268 1 16 HELIX 13 13 THR A 285 MET A 288 5 4 HELIX 14 14 LEU A 289 GLY A 297 1 9 HELIX 15 15 ILE A 309 THR A 313 5 5 HELIX 16 16 THR A 322 ALA A 327 1 6 HELIX 17 17 ARG A 374 PHE A 382 1 9 HELIX 18 18 LEU A 430 ARG A 439 1 10 HELIX 19 19 THR A 473 THR A 483 1 11 HELIX 20 20 PRO A 486 HIS A 490 5 5 HELIX 21 21 ASP A 509 TRP A 517 1 9 SHEET 1 A 4 ASP A 39 SER A 42 0 SHEET 2 A 4 THR A 32 ALA A 36 -1 N LEU A 34 O ILE A 41 SHEET 3 A 4 GLU A 223 VAL A 226 1 O VAL A 226 N SER A 35 SHEET 4 A 4 ARG A 198 LEU A 201 1 N TRP A 199 O VAL A 225 SHEET 1 B 4 ALA A 91 PRO A 94 0 SHEET 2 B 4 ARG A 67 ARG A 71 1 N VAL A 68 O ALA A 91 SHEET 3 B 4 ALA A 115 GLY A 118 1 O ALA A 115 N ALA A 69 SHEET 4 B 4 VAL A 129 VAL A 130 1 O VAL A 130 N GLY A 118 SHEET 1 C 2 MET A 157 THR A 163 0 SHEET 2 C 2 LYS A 171 ARG A 176 -1 O VAL A 175 N ALA A 158 SHEET 1 D 9 VAL A 249 GLN A 252 0 SHEET 2 D 9 TYR A 276 PHE A 279 1 O ILE A 278 N GLN A 252 SHEET 3 D 9 ARG A 302 TYR A 307 1 O VAL A 304 N PHE A 279 SHEET 4 D 9 THR A 317 GLU A 320 -1 O GLU A 319 N ASN A 305 SHEET 5 D 9 ILE A 332 ALA A 336 -1 O ARG A 335 N PHE A 318 SHEET 6 D 9 PHE A 411 ARG A 416 -1 O PHE A 411 N GLY A 334 SHEET 7 D 9 TYR A 396 GLU A 405 -1 N LEU A 402 O GLY A 415 SHEET 8 D 9 THR A 357 SER A 363 -1 N LEU A 360 O ASP A 401 SHEET 9 D 9 GLY A 341 VAL A 345 -1 N VAL A 345 O GLU A 359 SHEET 1 E 2 GLN A 420 LEU A 423 0 SHEET 2 E 2 TYR A 426 GLU A 429 -1 O ILE A 428 N ILE A 421 SHEET 1 F 3 VAL A 443 LYS A 454 0 SHEET 2 F 3 ASP A 457 ALA A 466 -1 O ASP A 457 N PHE A 453 SHEET 3 F 3 ARG A 493 PRO A 496 1 O ARG A 493 N CYS A 462 CISPEP 1 ARG A 300 PRO A 301 0 8.35 SITE 1 AC1 18 GLY A 281 GLU A 282 LYS A 283 ASN A 305 SITE 2 AC1 18 GLY A 306 TYR A 307 GLY A 308 THR A 310 SITE 3 AC1 18 ASP A 401 TYR A 413 ARG A 416 LYS A 507 SITE 4 AC1 18 ABA A 602 HOH A 719 HOH A 732 HOH A 738 SITE 5 AC1 18 HOH A 965 HOH A 970 SITE 1 AC2 10 ASP A 208 PHE A 209 GLY A 280 GLY A 281 SITE 2 AC2 10 GLY A 306 GLY A 308 ILE A 309 VAL A 314 SITE 3 AC2 10 PHE A 315 AMP A 601 CRYST1 157.016 157.016 157.016 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006369 0.00000