data_3VOK # _entry.id 3VOK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VOK pdb_00003vok 10.2210/pdb3vok/pdb NDB NA1569 ? ? RCSB RCSB095304 ? ? WWPDB D_1000095304 ? ? # _pdbx_database_status.entry_id 3VOK _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-01-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawai, H.' 1 'Sugimoto, H.' 2 'Shiro, Y.' 3 'Aono, S.' 4 # _citation.id primary _citation.title 'Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 30755 _citation.page_last 30768 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22798069 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.370916 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawai, H.' 1 ? primary 'Yamanaka, M.' 2 ? primary 'Sugimoto, H.' 3 ? primary 'Shiro, Y.' 4 ? primary 'Aono, S.' 5 ? # _cell.length_a 97.870 _cell.length_b 97.870 _cell.length_c 108.695 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.length_a_esd 0.001 _cell.length_b_esd 0.001 _cell.length_c_esd 0.001 _cell.angle_alpha_esd 0.0 _cell.angle_beta_esd 0.0 _cell.angle_gamma_esd 0.0 _cell.entry_id 3VOK _cell.pdbx_unique_axis ? _cell.Z_PDB 12 # _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 3VOK _symmetry.Int_Tables_number 179 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator' 22776.600 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3'" 4583.997 1 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPKSTYFSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLSQETLEIHDLFFNLLK DNSIEESLDKYKYLLLENLIDSPQYKLYKYRFLDWTYELERDWKPQSSATVPASENDNPISQVLKSVVHNLVYRLFSENW TEKTFIENYDKEIKLVTEGLLNYITDRKN ; ;MPKSTYFSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLSQETLEIHDLFFNLLK DNSIEESLDKYKYLLLENLIDSPQYKLYKYRFLDWTYELERDWKPQSSATVPASENDNPISQVLKSVVHNLVYRLFSENW TEKTFIENYDKEIKLVTEGLLNYITDRKN ; A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DA)(DC)(DA)(DC)(DT)(DG)(DT)(DG)(DT)(DC)(DA)(DT)' ATGACACTGTGTCAT U ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 LYS n 1 4 SER n 1 5 THR n 1 6 TYR n 1 7 PHE n 1 8 SER n 1 9 LEU n 1 10 SER n 1 11 ASP n 1 12 GLU n 1 13 LYS n 1 14 ARG n 1 15 ASN n 1 16 ARG n 1 17 VAL n 1 18 TYR n 1 19 ASP n 1 20 ALA n 1 21 CYS n 1 22 LEU n 1 23 ASN n 1 24 GLU n 1 25 PHE n 1 26 GLN n 1 27 THR n 1 28 HIS n 1 29 SER n 1 30 PHE n 1 31 HIS n 1 32 GLU n 1 33 ALA n 1 34 LYS n 1 35 ILE n 1 36 MET n 1 37 HIS n 1 38 ILE n 1 39 VAL n 1 40 LYS n 1 41 ALA n 1 42 LEU n 1 43 ASP n 1 44 ILE n 1 45 PRO n 1 46 ARG n 1 47 GLY n 1 48 SER n 1 49 PHE n 1 50 TYR n 1 51 GLN n 1 52 TYR n 1 53 PHE n 1 54 GLU n 1 55 ASP n 1 56 LEU n 1 57 LYS n 1 58 ASP n 1 59 ALA n 1 60 TYR n 1 61 PHE n 1 62 TYR n 1 63 VAL n 1 64 LEU n 1 65 SER n 1 66 GLN n 1 67 GLU n 1 68 THR n 1 69 LEU n 1 70 GLU n 1 71 ILE n 1 72 HIS n 1 73 ASP n 1 74 LEU n 1 75 PHE n 1 76 PHE n 1 77 ASN n 1 78 LEU n 1 79 LEU n 1 80 LYS n 1 81 ASP n 1 82 ASN n 1 83 SER n 1 84 ILE n 1 85 GLU n 1 86 GLU n 1 87 SER n 1 88 LEU n 1 89 ASP n 1 90 LYS n 1 91 TYR n 1 92 LYS n 1 93 TYR n 1 94 LEU n 1 95 LEU n 1 96 LEU n 1 97 GLU n 1 98 ASN n 1 99 LEU n 1 100 ILE n 1 101 ASP n 1 102 SER n 1 103 PRO n 1 104 GLN n 1 105 TYR n 1 106 LYS n 1 107 LEU n 1 108 TYR n 1 109 LYS n 1 110 TYR n 1 111 ARG n 1 112 PHE n 1 113 LEU n 1 114 ASP n 1 115 TRP n 1 116 THR n 1 117 TYR n 1 118 GLU n 1 119 LEU n 1 120 GLU n 1 121 ARG n 1 122 ASP n 1 123 TRP n 1 124 LYS n 1 125 PRO n 1 126 GLN n 1 127 SER n 1 128 SER n 1 129 ALA n 1 130 THR n 1 131 VAL n 1 132 PRO n 1 133 ALA n 1 134 SER n 1 135 GLU n 1 136 ASN n 1 137 ASP n 1 138 ASN n 1 139 PRO n 1 140 ILE n 1 141 SER n 1 142 GLN n 1 143 VAL n 1 144 LEU n 1 145 LYS n 1 146 SER n 1 147 VAL n 1 148 VAL n 1 149 HIS n 1 150 ASN n 1 151 LEU n 1 152 VAL n 1 153 TYR n 1 154 ARG n 1 155 LEU n 1 156 PHE n 1 157 SER n 1 158 GLU n 1 159 ASN n 1 160 TRP n 1 161 THR n 1 162 GLU n 1 163 LYS n 1 164 THR n 1 165 PHE n 1 166 ILE n 1 167 GLU n 1 168 ASN n 1 169 TYR n 1 170 ASP n 1 171 LYS n 1 172 GLU n 1 173 ILE n 1 174 LYS n 1 175 LEU n 1 176 VAL n 1 177 THR n 1 178 GLU n 1 179 GLY n 1 180 LEU n 1 181 LEU n 1 182 ASN n 1 183 TYR n 1 184 ILE n 1 185 THR n 1 186 ASP n 1 187 ARG n 1 188 LYS n 1 189 ASN n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DA n 2 7 DC n 2 8 DT y 2 8 DA y 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'L53789, LL0661, ygfC' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain IL1403 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactococcus lactis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272623 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9CHR1_LACLA Q9CHR1 1 ;MPKSTYFSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLSQETLEIHDLFFNLLK DNSIEESLDKYKYLLLENLIDSPQYKLYKYRFLDWTYELERDWKPQSSATVPASENDNPISQVLKSVVHNLVYRLFSENW TEKTFIENYDKEIKLVTEGLLNYITDRKN ; 1 ? 2 PDB 3VOK 3VOK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VOK A 1 ? 189 ? Q9CHR1 1 ? 189 ? 1 189 2 2 3VOK U 1 ? 15 ? 3VOK 1 ? 15 ? 1 15 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3VOK _struct_ref_seq_dif.mon_id DA _struct_ref_seq_dif.pdbx_pdb_strand_id U _struct_ref_seq_dif.seq_num 8 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name PDB _struct_ref_seq_dif.pdbx_seq_db_accession_code 3VOK _struct_ref_seq_dif.db_mon_id DT _struct_ref_seq_dif.pdbx_seq_db_seq_num 8 _struct_ref_seq_dif.details microheterogeneity _struct_ref_seq_dif.pdbx_auth_seq_num 8 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3VOK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 55.21 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '1.2M sodium citrate, 0.1M PIPES, pH 7.3, vapor diffusion, sitting drop, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2012-01-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU # _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 21224 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value 0.079 _reflns.pdbx_netI_over_sigmaI 41.584 _reflns.pdbx_redundancy 21.5 _reflns.entry_id 3VOK _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.513 _reflns_shell.pdbx_Rsym_value 0.513 _reflns_shell.meanI_over_sigI_obs 6.622 _reflns_shell.pdbx_redundancy 21.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VOK _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 23.8700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.1800 _refine.ls_number_reflns_obs 20763 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHTOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2037 _refine.ls_R_factor_R_work 0.2019 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2375 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1500 _refine.ls_number_reflns_R_free 1070 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.2483 _refine.solvent_model_param_bsol 43.9950 _refine.solvent_model_param_ksol 0.3690 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.4737 _refine.aniso_B[2][2] 2.4737 _refine.aniso_B[3][3] -4.9474 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2000 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8300 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1QPI _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8432 _refine.B_iso_max 147.090 _refine.B_iso_min 14.490 _refine.pdbx_overall_phase_error 21.8000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1521 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1927 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 23.8700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1925 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2671 1.106 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 286 0.071 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 280 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 738 20.349 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.9992 2.0901 8 94.0000 2335 . 0.1889 0.2214 . 122 . 2457 . 'X-RAY DIFFRACTION' . 2.0901 2.2002 8 95.0000 2333 . 0.1951 0.2282 . 134 . 2467 . 'X-RAY DIFFRACTION' . 2.2002 2.3380 8 96.0000 2398 . 0.2007 0.2584 . 138 . 2536 . 'X-RAY DIFFRACTION' . 2.3380 2.5183 8 98.0000 2440 . 0.2218 0.2811 . 131 . 2571 . 'X-RAY DIFFRACTION' . 2.5183 2.7714 8 98.0000 2464 . 0.2335 0.2837 . 123 . 2587 . 'X-RAY DIFFRACTION' . 2.7714 3.1716 8 99.0000 2481 . 0.2216 0.2895 . 159 . 2640 . 'X-RAY DIFFRACTION' . 3.1716 3.9929 8 99.0000 2556 . 0.1897 0.2208 . 132 . 2688 . 'X-RAY DIFFRACTION' . 3.9929 23.8719 8 98.0000 2686 . 0.1915 0.2008 . 131 . 2817 . 'X-RAY DIFFRACTION' . # _struct.entry_id 3VOK _struct.title 'X-ray Crystal Structure of Wild Type HrtR in the Apo Form with the Target DNA.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VOK _struct_keywords.text 'heme, sensor protein, TetR superfamily, DNA-binding complex, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? SER A 8 ? LYS A 3 SER A 8 1 ? 6 HELX_P HELX_P2 2 ASP A 11 ? HIS A 28 ? ASP A 11 HIS A 28 1 ? 18 HELX_P HELX_P3 3 LYS A 34 ? LEU A 42 ? LYS A 34 LEU A 42 1 ? 9 HELX_P HELX_P4 4 PRO A 45 ? TYR A 52 ? PRO A 45 TYR A 52 1 ? 8 HELX_P HELX_P5 5 ASP A 55 ? THR A 68 ? ASP A 55 THR A 68 1 ? 14 HELX_P HELX_P6 6 ILE A 71 ? LEU A 79 ? ILE A 71 LEU A 79 1 ? 9 HELX_P HELX_P7 7 SER A 83 ? ILE A 100 ? SER A 83 ILE A 100 1 ? 18 HELX_P HELX_P8 8 GLN A 104 ? ASP A 114 ? GLN A 104 ASP A 114 1 ? 11 HELX_P HELX_P9 9 THR A 116 ? TRP A 123 ? THR A 116 TRP A 123 1 ? 8 HELX_P HELX_P10 10 ASN A 138 ? GLU A 158 ? ASN A 138 GLU A 158 1 ? 21 HELX_P HELX_P11 11 THR A 161 ? GLU A 178 ? THR A 161 GLU A 178 1 ? 18 HELX_P HELX_P12 12 LEU A 181 ? ILE A 184 ? LEU A 181 ILE A 184 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DA 1 N6 ? ? ? 1_555 B DT 15 O4 ? ? U DA 1 U DT 15 7_554 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? B DA 1 N7 ? ? ? 1_555 B DT 15 N3 ? ? U DA 1 U DT 15 7_554 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 B DA 14 N1 ? ? U DT 2 U DA 14 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 O4 ? ? ? 1_555 B DA 14 N6 ? ? U DT 2 U DA 14 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DC 13 N3 ? ? U DG 3 U DC 13 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DC 13 O2 ? ? U DG 3 U DC 13 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DC 13 N4 ? ? U DG 3 U DC 13 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 B DT 12 N3 ? ? U DA 4 U DT 12 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DT 12 O4 ? ? U DA 4 U DT 12 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 N3 ? ? ? 1_555 B DG 11 N1 ? ? U DC 5 U DG 11 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DG 11 O6 ? ? U DC 5 U DG 11 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DG 11 N2 ? ? U DC 5 U DG 11 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B DT 10 N3 ? ? U DA 6 U DT 10 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DT 10 O4 ? ? U DA 6 U DT 10 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 7 N3 ? ? ? 1_555 B DG 9 N1 ? ? U DC 7 U DG 9 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 N4 ? ? ? 1_555 B DG 9 O6 ? ? U DC 7 U DG 9 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 7 O2 ? ? ? 1_555 B DG 9 N2 ? ? U DC 7 U DG 9 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DC 7 N3 ? ? U DG 9 U DC 7 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DC 7 O2 ? ? U DG 9 U DC 7 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 O6 ? ? ? 1_555 B DC 7 N4 ? ? U DG 9 U DC 7 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? U DT 10 U DA 6 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? U DT 10 U DA 6 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 N1 ? ? ? 1_555 B DC 5 N3 ? ? U DG 11 U DC 5 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 N2 ? ? ? 1_555 B DC 5 O2 ? ? U DG 11 U DC 5 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 O6 ? ? ? 1_555 B DC 5 N4 ? ? U DG 11 U DC 5 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 12 N3 ? ? ? 1_555 B DA 4 N1 ? ? U DT 12 U DA 4 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 12 O4 ? ? ? 1_555 B DA 4 N6 ? ? U DT 12 U DA 4 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 N3 ? ? ? 1_555 B DG 3 N1 ? ? U DC 13 U DG 3 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 13 N4 ? ? ? 1_555 B DG 3 O6 ? ? U DC 13 U DG 3 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 O2 ? ? ? 1_555 B DG 3 N2 ? ? U DC 13 U DG 3 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 14 N1 ? ? ? 1_555 B DT 2 N3 ? ? U DA 14 U DT 2 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 14 N6 ? ? ? 1_555 B DT 2 O4 ? ? U DA 14 U DT 2 7_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DT 15 N3 ? ? ? 1_555 B DA 1 N7 ? ? U DT 15 U DA 1 7_554 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? B DT 15 O4 ? ? ? 1_555 B DA 1 N6 ? ? U DT 15 U DA 1 7_554 ? ? ? ? ? ? HOOGSTEEN ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3VOK _atom_sites.fract_transf_matrix[1][1] 0.010218 _atom_sites.fract_transf_matrix[1][2] 0.005899 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011798 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009200 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 PRO 125 125 ? ? ? A . n A 1 126 GLN 126 126 ? ? ? A . n A 1 127 SER 127 127 ? ? ? A . n A 1 128 SER 128 128 ? ? ? A . n A 1 129 ALA 129 129 ? ? ? A . n A 1 130 THR 130 130 ? ? ? A . n A 1 131 VAL 131 131 ? ? ? A . n A 1 132 PRO 132 132 ? ? ? A . n A 1 133 ALA 133 133 ? ? ? A . n A 1 134 SER 134 134 ? ? ? A . n A 1 135 GLU 135 135 ? ? ? A . n A 1 136 ASN 136 136 ? ? ? A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 TYR 153 153 153 TYR TYR A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 TRP 160 160 160 TRP TRP A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ASN 168 168 168 ASN ASN A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 ASN 189 189 189 ASN ASN A . n B 2 1 DA 1 1 1 DA DA U . n B 2 2 DT 2 2 2 DT DT U . n B 2 3 DG 3 3 3 DG DG U . n B 2 4 DA 4 4 4 DA DA U . n B 2 5 DC 5 5 5 DC DC U . n B 2 6 DA 6 6 6 DA DA U . n B 2 7 DC 7 7 7 DC DC U . n B 2 8 DT 8 8 8 DT DT U . y B 2 8 DA 8 8 8 DA DA U . y B 2 9 DG 9 9 9 DG DG U . n B 2 10 DT 10 10 10 DT DT U . n B 2 11 DG 11 11 11 DG DG U . n B 2 12 DT 12 12 12 DT DT U . n B 2 13 DC 13 13 13 DC DC U . n B 2 14 DA 14 14 14 DA DA U . n B 2 15 DT 15 15 15 DT DT U . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 1 HOH HOH A . C 3 HOH 2 202 2 HOH HOH A . C 3 HOH 3 203 3 HOH HOH A . C 3 HOH 4 204 4 HOH HOH A . C 3 HOH 5 205 5 HOH HOH A . C 3 HOH 6 206 6 HOH HOH A . C 3 HOH 7 207 7 HOH HOH A . C 3 HOH 8 208 8 HOH HOH A . C 3 HOH 9 209 9 HOH HOH A . C 3 HOH 10 210 10 HOH HOH A . C 3 HOH 11 211 11 HOH HOH A . C 3 HOH 12 212 12 HOH HOH A . C 3 HOH 13 213 13 HOH HOH A . C 3 HOH 14 214 14 HOH HOH A . C 3 HOH 15 215 15 HOH HOH A . C 3 HOH 16 216 16 HOH HOH A . C 3 HOH 17 217 17 HOH HOH A . C 3 HOH 18 218 18 HOH HOH A . C 3 HOH 19 219 19 HOH HOH A . C 3 HOH 20 220 20 HOH HOH A . C 3 HOH 21 221 21 HOH HOH A . C 3 HOH 22 222 22 HOH HOH A . C 3 HOH 23 223 23 HOH HOH A . C 3 HOH 24 224 24 HOH HOH A . C 3 HOH 25 225 25 HOH HOH A . C 3 HOH 26 226 26 HOH HOH A . C 3 HOH 27 227 27 HOH HOH A . C 3 HOH 28 228 28 HOH HOH A . C 3 HOH 29 229 29 HOH HOH A . C 3 HOH 30 230 30 HOH HOH A . C 3 HOH 31 231 31 HOH HOH A . C 3 HOH 32 232 32 HOH HOH A . C 3 HOH 33 233 33 HOH HOH A . C 3 HOH 34 234 34 HOH HOH A . C 3 HOH 35 235 35 HOH HOH A . C 3 HOH 36 236 36 HOH HOH A . C 3 HOH 37 237 37 HOH HOH A . C 3 HOH 38 238 39 HOH HOH A . C 3 HOH 39 239 40 HOH HOH A . C 3 HOH 40 240 41 HOH HOH A . C 3 HOH 41 241 42 HOH HOH A . C 3 HOH 42 242 43 HOH HOH A . C 3 HOH 43 243 44 HOH HOH A . C 3 HOH 44 244 45 HOH HOH A . C 3 HOH 45 245 46 HOH HOH A . C 3 HOH 46 246 47 HOH HOH A . C 3 HOH 47 247 48 HOH HOH A . C 3 HOH 48 248 49 HOH HOH A . C 3 HOH 49 249 50 HOH HOH A . C 3 HOH 50 250 51 HOH HOH A . C 3 HOH 51 251 52 HOH HOH A . C 3 HOH 52 252 53 HOH HOH A . C 3 HOH 53 253 54 HOH HOH A . C 3 HOH 54 254 55 HOH HOH A . C 3 HOH 55 255 56 HOH HOH A . C 3 HOH 56 256 57 HOH HOH A . C 3 HOH 57 257 58 HOH HOH A . C 3 HOH 58 258 59 HOH HOH A . C 3 HOH 59 259 60 HOH HOH A . C 3 HOH 60 260 61 HOH HOH A . C 3 HOH 61 261 62 HOH HOH A . C 3 HOH 62 262 63 HOH HOH A . C 3 HOH 63 263 65 HOH HOH A . C 3 HOH 64 264 66 HOH HOH A . C 3 HOH 65 265 67 HOH HOH A . C 3 HOH 66 266 68 HOH HOH A . C 3 HOH 67 267 70 HOH HOH A . C 3 HOH 68 268 73 HOH HOH A . C 3 HOH 69 269 74 HOH HOH A . C 3 HOH 70 270 75 HOH HOH A . C 3 HOH 71 271 77 HOH HOH A . C 3 HOH 72 272 79 HOH HOH A . C 3 HOH 73 273 80 HOH HOH A . C 3 HOH 74 274 81 HOH HOH A . D 3 HOH 1 101 38 HOH HOH U . D 3 HOH 2 102 64 HOH HOH U . D 3 HOH 3 103 69 HOH HOH U . D 3 HOH 4 104 71 HOH HOH U . D 3 HOH 5 105 72 HOH HOH U . D 3 HOH 6 106 76 HOH HOH U . D 3 HOH 7 107 78 HOH HOH U . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6460 ? 1 MORE -51 ? 1 'SSA (A^2)' 21670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -36.2316666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-25 2 'Structure model' 1 1 2012-09-12 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.av_R_equivalents 0.079 _diffrn_reflns.number 458505 _diffrn_reflns.diffrn_id 1 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 34.3766 47.9828 4.1551 0.4642 0.3592 0.3223 -0.1201 -0.1024 -0.0290 0.3224 0.7563 0.2315 0.3115 -0.0449 0.2582 0.1106 0.0090 -0.0424 -0.1612 0.0018 0.0668 0.1116 0.0462 0.0992 'X-RAY DIFFRACTION' 2 ? refined 26.6805 49.5298 -11.0317 0.5527 0.3319 0.3692 -0.1488 -0.1564 0.0909 0.0011 0.1181 0.0032 0.0096 0.0009 0.0117 -0.0624 0.0178 0.0185 0.0321 0.0228 0.0316 -0.0536 -0.0371 -0.0131 'X-RAY DIFFRACTION' 3 ? refined 34.5561 48.0849 -3.0229 0.4302 0.2703 0.3491 -0.1477 -0.1234 0.0380 0.1450 0.0658 0.0816 0.0460 0.0318 0.0308 -0.0389 0.0362 0.0113 0.0323 0.0381 -0.0429 -0.0629 0.0044 0.0869 'X-RAY DIFFRACTION' 4 ? refined 15.8376 22.7628 -1.8844 0.2846 0.1955 0.2246 0.0095 -0.0017 -0.0156 0.5827 0.1904 0.3966 0.2273 -0.0022 -0.1939 0.0531 -0.0400 -0.0208 -0.1725 -0.1393 0.0005 0.2587 -0.0909 -0.0357 'X-RAY DIFFRACTION' 5 ? refined 18.1492 40.3027 -4.0382 0.4147 0.2440 0.3289 -0.0937 -0.0657 -0.0202 0.1145 0.1131 0.0901 0.0821 0.0388 0.0927 -0.0317 -0.0566 0.0368 -0.0215 0.0367 0.0115 0.1172 -0.0527 -0.0155 'X-RAY DIFFRACTION' 6 ? refined 29.6581 34.2016 -14.1192 0.4178 0.5333 0.3139 -0.0766 -0.0876 -0.0091 0.0473 0.0818 0.2134 -0.0101 0.0874 0.0341 -0.0592 0.0615 0.0109 0.0942 -0.0392 -0.0104 -0.0676 -0.1934 0.0725 'X-RAY DIFFRACTION' 7 ? refined 15.5494 29.3675 -13.4047 0.1692 0.1817 0.2136 0.0105 -0.0254 0.0137 0.4992 0.0499 0.5440 0.1599 0.0741 0.0377 -0.0176 -0.0112 0.0256 0.0391 -0.0294 -0.0748 -0.0429 -0.1183 0.1451 'X-RAY DIFFRACTION' 8 ? refined 5.4954 28.4442 -9.8270 0.2050 0.2236 0.2633 0.0607 -0.0038 -0.0222 0.3351 0.1143 0.1511 -0.1662 -0.0311 -0.0048 -0.0397 0.0313 0.0255 -0.0319 -0.0168 0.1028 0.0386 -0.0907 -0.1414 'X-RAY DIFFRACTION' 9 ? refined 1.2336 13.9852 -22.5451 0.1669 0.1901 0.2607 0.0163 -0.0505 0.0269 0.0616 0.0139 0.0841 -0.0040 0.0033 -0.0076 -0.0290 -0.0035 0.0224 -0.0390 0.1038 -0.0494 0.0163 -0.0081 -0.0178 'X-RAY DIFFRACTION' 10 ? refined 36.7486 64.6365 -18.1634 0.6523 0.4340 0.1782 -0.1720 -0.6310 0.2025 0.0490 0.1410 0.2277 -0.0791 0.0102 -0.0558 0.1689 0.2342 0.3937 -0.0061 0.0238 -0.0262 -0.0113 -0.0295 0.0808 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 27 'CHAIN A AND (RESSEQ 2:27)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 28 A 34 'CHAIN A AND (RESSEQ 28:34)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 35 A 70 'CHAIN A AND (RESSEQ 35:70)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 71 A 99 'CHAIN A AND (RESSEQ 71:99)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 100 A 113 'CHAIN A AND (RESSEQ 100:113)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 114 A 138 'CHAIN A AND (RESSEQ 114:138)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 139 A 157 'CHAIN A AND (RESSEQ 139:157)' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 158 A 178 'CHAIN A AND (RESSEQ 158:178)' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 179 A 189 'CHAIN A AND (RESSEQ 179:189)' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 U 1 U 15 'CHAIN U' ? ? ? ? ? # _pdbx_phasing_MR.entry_id 3VOK _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 23.870 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 23.870 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.3.0 'Tue Oct 18 19:46:39 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BSS . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # _pdbx_entry_details.entry_id 3VOK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'CHAIN U HAS MICROHETEROGENEITY AT POSITION 8(DT/DA)' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" U DG 3 ? ? "C2'" U DG 3 ? ? "C1'" U DG 3 ? ? 96.50 102.40 -5.90 0.80 N 2 1 "O4'" U DG 3 ? ? "C1'" U DG 3 ? ? N9 U DG 3 ? ? 110.19 108.30 1.89 0.30 N 3 1 "O4'" U DA 6 ? ? "C1'" U DA 6 ? ? N9 U DA 6 ? ? 110.35 108.30 2.05 0.30 N 4 1 "C1'" U DG 9 ? ? "O4'" U DG 9 ? ? "C4'" U DG 9 ? ? 102.74 110.10 -7.36 1.00 N 5 1 "O4'" U DG 9 ? ? "C1'" U DG 9 ? ? N9 U DG 9 ? ? 110.29 108.30 1.99 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PRO 125 ? A PRO 125 3 1 Y 1 A GLN 126 ? A GLN 126 4 1 Y 1 A SER 127 ? A SER 127 5 1 Y 1 A SER 128 ? A SER 128 6 1 Y 1 A ALA 129 ? A ALA 129 7 1 Y 1 A THR 130 ? A THR 130 8 1 Y 1 A VAL 131 ? A VAL 131 9 1 Y 1 A PRO 132 ? A PRO 132 10 1 Y 1 A ALA 133 ? A ALA 133 11 1 Y 1 A SER 134 ? A SER 134 12 1 Y 1 A GLU 135 ? A GLU 135 13 1 Y 1 A ASN 136 ? A ASN 136 # _cell_measurement.reflns_used 458505 _cell_measurement.entry_id 3VOK # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # _diffrn_measurement.details '1.00 degrees, 999.0 sec, detector distance 179.58 mm' _diffrn_measurement.diffrn_id 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VOK 'double helix' 3VOK 'b-form double helix' 3VOK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 B DT 15 7_554 0.472 -3.449 0.788 -17.207 19.256 74.106 1 U_DA1:DT15_U U 1 ? U 15 ? 23 3 1 B DT 2 1_555 B DA 14 7_554 0.137 -0.161 -0.001 -6.279 -0.065 7.224 2 U_DT2:DA14_U U 2 ? U 14 ? 20 1 1 B DG 3 1_555 B DC 13 7_554 -0.534 -0.252 -0.268 2.513 -11.030 0.748 3 U_DG3:DC13_U U 3 ? U 13 ? 19 1 1 B DA 4 1_555 B DT 12 7_554 -0.474 -0.070 -0.058 -0.754 -10.481 0.555 4 U_DA4:DT12_U U 4 ? U 12 ? 20 1 1 B DC 5 1_555 B DG 11 7_554 0.584 -0.093 -0.190 7.064 -8.076 3.489 5 U_DC5:DG11_U U 5 ? U 11 ? 19 1 1 B DA 6 1_555 B DT 10 7_554 -0.239 -0.150 0.152 12.885 -9.959 -3.083 6 U_DA6:DT10_U U 6 ? U 10 ? 20 1 1 B DC 7 1_555 B DG 9 7_554 0.655 -0.308 -0.089 12.359 -12.381 2.337 7 U_DC7:DG9_U U 7 ? U 9 ? 19 1 1 B DG 9 1_555 B DC 7 7_554 -0.655 -0.308 -0.089 -12.359 -12.381 2.337 8 U_DG9:DC7_U U 9 ? U 7 ? 19 1 1 B DT 10 1_555 B DA 6 7_554 0.239 -0.150 0.152 -12.885 -9.959 -3.083 9 U_DT10:DA6_U U 10 ? U 6 ? 20 1 1 B DG 11 1_555 B DC 5 7_554 -0.584 -0.093 -0.190 -7.064 -8.076 3.489 10 U_DG11:DC5_U U 11 ? U 5 ? 19 1 1 B DT 12 1_555 B DA 4 7_554 0.474 -0.070 -0.058 0.754 -10.481 0.555 11 U_DT12:DA4_U U 12 ? U 4 ? 20 1 1 B DC 13 1_555 B DG 3 7_554 0.534 -0.252 -0.268 -2.513 -11.029 0.748 12 U_DC13:DG3_U U 13 ? U 3 ? 19 1 1 B DA 14 1_555 B DT 2 7_554 -0.137 -0.161 -0.001 6.279 -0.065 7.224 13 U_DA14:DT2_U U 14 ? U 2 ? 20 1 1 B DT 15 1_555 B DA 1 7_554 -0.472 3.449 -0.788 17.207 -19.256 -74.106 14 U_DT15:DA1_U U 15 ? U 1 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 B DT 15 7_554 B DT 2 1_555 B DA 14 7_554 -0.072 3.845 -1.466 -144.066 99.133 -168.764 -1.879 0.027 -1.678 -49.574 -72.043 -179.499 1 UU_DA1DT2:DA14DT15_UU U 1 ? U 15 ? U 2 ? U 14 ? 1 B DT 2 1_555 B DA 14 7_554 B DG 3 1_555 B DC 13 7_554 -0.389 1.890 3.108 2.089 0.336 34.212 3.157 0.972 3.098 0.571 -3.547 34.276 2 UU_DT2DG3:DC13DA14_UU U 2 ? U 14 ? U 3 ? U 13 ? 1 B DG 3 1_555 B DC 13 7_554 B DA 4 1_555 B DT 12 7_554 -0.067 0.989 3.322 -4.534 -0.388 40.734 1.456 -0.407 3.301 -0.555 6.489 40.977 3 UU_DG3DA4:DT12DC13_UU U 3 ? U 13 ? U 4 ? U 12 ? 1 B DA 4 1_555 B DT 12 7_554 B DC 5 1_555 B DG 11 7_554 0.163 -0.144 3.091 0.406 0.571 40.436 -0.269 -0.193 3.090 0.826 -0.588 40.442 4 UU_DA4DC5:DG11DT12_UU U 4 ? U 12 ? U 5 ? U 11 ? 1 B DC 5 1_555 B DG 11 7_554 B DA 6 1_555 B DT 10 7_554 -0.275 0.359 3.267 -2.855 5.319 27.293 -0.538 -0.118 3.288 11.101 5.957 27.940 5 UU_DC5DA6:DT10DG11_UU U 5 ? U 11 ? U 6 ? U 10 ? 1 B DA 6 1_555 B DT 10 7_554 B DC 7 1_555 B DG 9 7_554 1.076 -1.059 3.210 0.153 4.004 37.251 -2.155 -1.656 3.088 6.245 -0.239 37.458 6 UU_DA6DC7:DG9DT10_UU U 6 ? U 10 ? U 7 ? U 9 ? 1 B DC 7 1_555 B DG 9 7_554 B DG 9 1_555 B DC 7 7_554 0.000 -2.267 6.836 0.000 18.053 50.870 -4.748 0.000 5.782 20.298 0.000 53.776 7 UU_DC7DG9:DC7DG9_UU U 7 ? U 9 ? U 9 ? U 7 ? 1 B DG 9 1_555 B DC 7 7_554 B DT 10 1_555 B DA 6 7_554 -1.076 -1.059 3.210 -0.153 4.004 37.251 -2.155 1.656 3.088 6.245 0.239 37.458 8 UU_DG9DT10:DA6DC7_UU U 9 ? U 7 ? U 10 ? U 6 ? 1 B DT 10 1_555 B DA 6 7_554 B DG 11 1_555 B DC 5 7_554 0.275 0.359 3.267 2.855 5.319 27.293 -0.538 0.118 3.288 11.101 -5.957 27.940 9 UU_DT10DG11:DC5DA6_UU U 10 ? U 6 ? U 11 ? U 5 ? 1 B DG 11 1_555 B DC 5 7_554 B DT 12 1_555 B DA 4 7_554 -0.163 -0.144 3.091 -0.406 0.571 40.436 -0.269 0.193 3.090 0.826 0.588 40.442 10 UU_DG11DT12:DA4DC5_UU U 11 ? U 5 ? U 12 ? U 4 ? 1 B DT 12 1_555 B DA 4 7_554 B DC 13 1_555 B DG 3 7_554 0.067 0.989 3.322 4.534 -0.388 40.734 1.456 0.407 3.302 -0.555 -6.489 40.977 11 UU_DT12DC13:DG3DA4_UU U 12 ? U 4 ? U 13 ? U 3 ? 1 B DC 13 1_555 B DG 3 7_554 B DA 14 1_555 B DT 2 7_554 0.389 1.890 3.108 -2.089 0.336 34.212 3.157 -0.972 3.098 0.571 3.547 34.276 12 UU_DC13DA14:DT2DG3_UU U 13 ? U 3 ? U 14 ? U 2 ? 1 B DA 14 1_555 B DT 2 7_554 B DT 15 1_555 B DA 1 7_554 1.679 -2.085 3.127 -0.501 5.097 69.065 -2.008 -1.495 2.975 4.490 0.442 69.231 13 UU_DA14DT15:DA1DT2_UU U 14 ? U 2 ? U 15 ? U 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QPI _pdbx_initial_refinement_model.details ? #