HEADER VIRAL PROTEIN 31-JAN-12 3VOP TITLE STRUCTURE OF VACCINIA VIRUS A27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN A27; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 21-84; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE; SOURCE 6 GENE: A27, A27L, VACWR150; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS VACCINIA VIRUS, VIRUS FUSION PROTEIN, VIRUS ENVELOPE PROTEIN, COILED- KEYWDS 2 COIL PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHANG,T.P.KO,F.L.HSIEH,A.H.J.WANG REVDAT 5 20-MAR-24 3VOP 1 REMARK REVDAT 4 18-DEC-19 3VOP 1 JRNL SEQADV REVDAT 3 22-NOV-17 3VOP 1 REMARK REVDAT 2 04-SEP-13 3VOP 1 JRNL REVDAT 1 06-MAR-13 3VOP 0 JRNL AUTH T.H.CHANG,S.J.CHANG,F.L.HSIEH,T.P.KO,C.T.LIN,M.R.HO,I.WANG, JRNL AUTH 2 S.T.HSU,R.T.GUO,W.CHANG,A.H.WANG JRNL TITL CRYSTAL STRUCTURE OF VACCINIA VIRAL A27 PROTEIN REVEALS A JRNL TITL 2 NOVEL STRUCTURE CRITICAL FOR ITS FUNCTION AND COMPLEX JRNL TITL 3 FORMATION WITH A26 PROTEIN. JRNL REF PLOS PATHOG. V. 9 03563 2013 JRNL REFN ESSN 1553-7374 JRNL PMID 23990784 JRNL DOI 10.1371/JOURNAL.PPAT.1003563 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1022 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1093 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1432 ; 1.652 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 120 ; 6.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;39.480 ;25.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;21.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 165 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 747 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 615 ; 0.933 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 1.804 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 478 ; 3.089 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 430 ; 5.465 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5070 52.6500 22.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1647 REMARK 3 T33: 0.3067 T12: 0.0637 REMARK 3 T13: 0.0059 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 8.4859 L22: 17.2867 REMARK 3 L33: 1.3795 L12: -10.1235 REMARK 3 L13: -2.5598 L23: 4.4541 REMARK 3 S TENSOR REMARK 3 S11: -0.1602 S12: -0.4492 S13: 1.1700 REMARK 3 S21: -0.0190 S22: 0.4950 S23: -0.8800 REMARK 3 S31: -0.2601 S32: 0.1048 S33: -0.3348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3320 46.5670 18.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.2436 REMARK 3 T33: 0.0716 T12: 0.0785 REMARK 3 T13: -0.0110 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 7.9812 L22: 24.4793 REMARK 3 L33: 2.2548 L12: -11.6619 REMARK 3 L13: -1.0085 L23: 2.6054 REMARK 3 S TENSOR REMARK 3 S11: 0.3021 S12: 0.1233 S13: 0.1397 REMARK 3 S21: -0.8690 S22: -0.1086 S23: 0.1398 REMARK 3 S31: -0.2526 S32: -0.4276 S33: -0.1934 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 22 C 64 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3240 65.5290 24.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.1241 REMARK 3 T33: 0.1343 T12: 0.1106 REMARK 3 T13: -0.0200 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 14.4098 L22: 21.1182 REMARK 3 L33: 3.4452 L12: -16.9548 REMARK 3 L13: 6.3737 L23: -8.7685 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.1772 S13: -0.1736 REMARK 3 S21: -0.1692 S22: -0.0357 S23: -0.0569 REMARK 3 S31: 0.1650 S32: 0.0679 S33: 0.0534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3VOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000095309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-07; 13-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; NSRRC REMARK 200 BEAMLINE : BL12B2; BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 1.25516, 1.25450 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR; REMARK 200 HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, PH 4.5, 0.2M REMARK 280 NACL, 45-50% PEG 200, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.11100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.66650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.55550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.66650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.55550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.11100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 ASN A 23 REMARK 465 GLU A 24 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 PRO B 8 REMARK 465 GLU B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 14 REMARK 465 ILE B 15 REMARK 465 VAL B 16 REMARK 465 LYS B 17 REMARK 465 ALA B 18 REMARK 465 ASP B 19 REMARK 465 GLU B 20 REMARK 465 ASP B 21 REMARK 465 ASP B 22 REMARK 465 ASN B 23 REMARK 465 GLU B 24 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 LYS C 3 REMARK 465 ALA C 4 REMARK 465 ALA C 5 REMARK 465 LYS C 6 REMARK 465 LYS C 7 REMARK 465 PRO C 8 REMARK 465 GLU C 9 REMARK 465 ALA C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 GLU C 13 REMARK 465 ALA C 14 REMARK 465 ILE C 15 REMARK 465 VAL C 16 REMARK 465 LYS C 17 REMARK 465 ALA C 18 REMARK 465 ASP C 19 REMARK 465 GLU C 20 REMARK 465 ASP C 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 63 CB GLU A 63 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 59 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 24 43.35 -84.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 63 ASN C 64 -137.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 102 DBREF 3VOP A 1 64 UNP P11258 A27_VACCW 21 84 DBREF 3VOP B 1 64 UNP P11258 A27_VACCW 21 84 DBREF 3VOP C 1 64 UNP P11258 A27_VACCW 21 84 SEQADV 3VOP ALA A 51 UNP P11258 CYS 71 ENGINEERED MUTATION SEQADV 3VOP ALA A 52 UNP P11258 CYS 72 ENGINEERED MUTATION SEQADV 3VOP ALA B 51 UNP P11258 CYS 71 ENGINEERED MUTATION SEQADV 3VOP ALA B 52 UNP P11258 CYS 72 ENGINEERED MUTATION SEQADV 3VOP ALA C 51 UNP P11258 CYS 71 ENGINEERED MUTATION SEQADV 3VOP ALA C 52 UNP P11258 CYS 72 ENGINEERED MUTATION SEQRES 1 A 64 SER THR LYS ALA ALA LYS LYS PRO GLU ALA LYS ARG GLU SEQRES 2 A 64 ALA ILE VAL LYS ALA ASP GLU ASP ASP ASN GLU GLU THR SEQRES 3 A 64 LEU LYS GLN ARG LEU THR ASN LEU GLU LYS LYS ILE THR SEQRES 4 A 64 ASN VAL THR THR LYS PHE GLU GLN ILE GLU LYS ALA ALA SEQRES 5 A 64 LYS ARG ASN ASP GLU VAL LEU PHE ARG LEU GLU ASN SEQRES 1 B 64 SER THR LYS ALA ALA LYS LYS PRO GLU ALA LYS ARG GLU SEQRES 2 B 64 ALA ILE VAL LYS ALA ASP GLU ASP ASP ASN GLU GLU THR SEQRES 3 B 64 LEU LYS GLN ARG LEU THR ASN LEU GLU LYS LYS ILE THR SEQRES 4 B 64 ASN VAL THR THR LYS PHE GLU GLN ILE GLU LYS ALA ALA SEQRES 5 B 64 LYS ARG ASN ASP GLU VAL LEU PHE ARG LEU GLU ASN SEQRES 1 C 64 SER THR LYS ALA ALA LYS LYS PRO GLU ALA LYS ARG GLU SEQRES 2 C 64 ALA ILE VAL LYS ALA ASP GLU ASP ASP ASN GLU GLU THR SEQRES 3 C 64 LEU LYS GLN ARG LEU THR ASN LEU GLU LYS LYS ILE THR SEQRES 4 C 64 ASN VAL THR THR LYS PHE GLU GLN ILE GLU LYS ALA ALA SEQRES 5 C 64 LYS ARG ASN ASP GLU VAL LEU PHE ARG LEU GLU ASN HET PEG A 101 7 HET PEG A 102 7 HET PEG B 501 7 HET PEG B 502 7 HET PEG B 503 7 HET PEG B 504 7 HET PEG B 505 7 HET PEG C 101 7 HET PEG C 102 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG 9(C4 H10 O3) FORMUL 13 HOH *130(H2 O) HELIX 1 1 THR A 26 ASN A 64 1 39 HELIX 2 2 THR B 26 ASN B 64 1 39 HELIX 3 3 THR C 26 ASN C 64 1 39 SITE 1 AC1 5 ARG A 61 PEG A 102 HOH A 213 HOH A 220 SITE 2 AC1 5 ASP C 56 SITE 1 AC2 7 LYS A 53 PEG A 101 HOH A 213 HOH A 233 SITE 2 AC2 7 HOH A 244 LYS C 53 GLU C 57 SITE 1 AC3 4 LYS B 53 ASP B 56 PEG B 503 HOH B 614 SITE 1 AC4 4 GLU B 49 LYS B 53 HOH B 617 GLU C 63 SITE 1 AC5 5 GLU B 63 PEG B 501 HOH B 615 GLU C 49 SITE 2 AC5 5 ASP C 56 SITE 1 AC6 2 ARG B 61 GLU C 63 SITE 1 AC7 6 GLU A 49 ASP A 56 LYS B 44 ALA B 51 SITE 2 AC7 6 ARG B 54 HOH B 627 SITE 1 AC8 5 ALA A 51 ASN A 55 ARG C 54 GLU C 57 SITE 2 AC8 5 VAL C 58 CRYST1 79.190 79.190 90.222 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011084 0.00000