data_3VP7 # _entry.id 3VP7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VP7 pdb_00003vp7 10.2210/pdb3vp7/pdb RCSB RCSB095327 ? ? WWPDB D_1000095327 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VP7 _pdbx_database_status.recvd_initial_deposition_date 2012-02-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Noda, N.N.' 1 'Kobayashi, T.' 2 'Adachi, W.' 3 'Fujioka, Y.' 4 'Ohsumi, Y.' 5 'Inagaki, F.' 6 # _citation.id primary _citation.title ;Structure of the novel C-terminal domain of vacuolar protein sorting 30/autophagy-related protein 6 and its specific role in autophagy. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 16256 _citation.page_last 16266 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 1083-351X _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22437838 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.348250 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Noda, N.N.' 1 ? primary 'Kobayashi, T.' 2 ? primary 'Adachi, W.' 3 ? primary 'Fujioka, Y.' 4 ? primary 'Ohsumi, Y.' 5 ? primary 'Inagaki, F.' 6 ? # _cell.entry_id 3VP7 _cell.length_a 59.959 _cell.length_b 59.959 _cell.length_c 113.977 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VP7 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vacuolar protein sorting-associated protein 30' 24681.158 1 ? ? 'C-terminal domain, UNP RESIDUES 320-539' ? 2 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Autophagy-related protein 6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNS VEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNAN DVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLSK ; _entity_poly.pdbx_seq_one_letter_code_can ;INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNS VEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNAN DVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASN n 1 3 ILE n 1 4 PHE n 1 5 ASN n 1 6 ALA n 1 7 THR n 1 8 PHE n 1 9 LYS n 1 10 ILE n 1 11 SER n 1 12 HIS n 1 13 SER n 1 14 GLY n 1 15 PRO n 1 16 PHE n 1 17 ALA n 1 18 THR n 1 19 ILE n 1 20 ASN n 1 21 GLY n 1 22 LEU n 1 23 ARG n 1 24 LEU n 1 25 GLY n 1 26 SER n 1 27 ILE n 1 28 PRO n 1 29 GLU n 1 30 SER n 1 31 VAL n 1 32 VAL n 1 33 PRO n 1 34 TRP n 1 35 LYS n 1 36 GLU n 1 37 ILE n 1 38 ASN n 1 39 ALA n 1 40 ALA n 1 41 LEU n 1 42 GLY n 1 43 GLN n 1 44 LEU n 1 45 ILE n 1 46 LEU n 1 47 LEU n 1 48 LEU n 1 49 ALA n 1 50 THR n 1 51 ILE n 1 52 ASN n 1 53 LYS n 1 54 ASN n 1 55 LEU n 1 56 LYS n 1 57 ILE n 1 58 ASN n 1 59 LEU n 1 60 VAL n 1 61 ASP n 1 62 TYR n 1 63 GLU n 1 64 LEU n 1 65 GLN n 1 66 PRO n 1 67 MET n 1 68 GLY n 1 69 SER n 1 70 PHE n 1 71 SER n 1 72 LYS n 1 73 ILE n 1 74 LYS n 1 75 LYS n 1 76 ARG n 1 77 MET n 1 78 VAL n 1 79 ASN n 1 80 SER n 1 81 VAL n 1 82 GLU n 1 83 TYR n 1 84 ASN n 1 85 ASN n 1 86 SER n 1 87 THR n 1 88 THR n 1 89 ASN n 1 90 ALA n 1 91 PRO n 1 92 GLY n 1 93 ASP n 1 94 TRP n 1 95 LEU n 1 96 ILE n 1 97 LEU n 1 98 PRO n 1 99 VAL n 1 100 TYR n 1 101 TYR n 1 102 ASP n 1 103 GLU n 1 104 ASN n 1 105 PHE n 1 106 ASN n 1 107 LEU n 1 108 GLY n 1 109 ARG n 1 110 ILE n 1 111 PHE n 1 112 ARG n 1 113 LYS n 1 114 GLU n 1 115 THR n 1 116 LYS n 1 117 PHE n 1 118 ASP n 1 119 LYS n 1 120 SER n 1 121 LEU n 1 122 GLU n 1 123 THR n 1 124 THR n 1 125 LEU n 1 126 GLU n 1 127 ILE n 1 128 ILE n 1 129 SER n 1 130 GLU n 1 131 ILE n 1 132 THR n 1 133 ARG n 1 134 GLN n 1 135 LEU n 1 136 SER n 1 137 THR n 1 138 ILE n 1 139 ALA n 1 140 SER n 1 141 SER n 1 142 TYR n 1 143 SER n 1 144 SER n 1 145 GLN n 1 146 THR n 1 147 LEU n 1 148 THR n 1 149 THR n 1 150 SER n 1 151 GLN n 1 152 ASP n 1 153 GLU n 1 154 SER n 1 155 SER n 1 156 MET n 1 157 ASN n 1 158 ASN n 1 159 ALA n 1 160 ASN n 1 161 ASP n 1 162 VAL n 1 163 GLU n 1 164 ASN n 1 165 SER n 1 166 THR n 1 167 SER n 1 168 ILE n 1 169 LEU n 1 170 GLU n 1 171 LEU n 1 172 PRO n 1 173 TYR n 1 174 ILE n 1 175 MET n 1 176 ASN n 1 177 LYS n 1 178 ASP n 1 179 LYS n 1 180 ILE n 1 181 ASN n 1 182 GLY n 1 183 LEU n 1 184 SER n 1 185 VAL n 1 186 LYS n 1 187 LEU n 1 188 HIS n 1 189 GLY n 1 190 SER n 1 191 SER n 1 192 PRO n 1 193 ASN n 1 194 LEU n 1 195 GLU n 1 196 TRP n 1 197 THR n 1 198 THR n 1 199 ALA n 1 200 MET n 1 201 LYS n 1 202 PHE n 1 203 LEU n 1 204 LEU n 1 205 THR n 1 206 ASN n 1 207 VAL n 1 208 LYS n 1 209 TRP n 1 210 LEU n 1 211 LEU n 1 212 ALA n 1 213 PHE n 1 214 SER n 1 215 SER n 1 216 ASN n 1 217 LEU n 1 218 LEU n 1 219 SER n 1 220 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VPS30, APG6, ATG6, VPT30, YPL120W, LPH7' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6p _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPS30_YEAST _struct_ref.pdbx_db_accession Q02948 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNS VEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNAN DVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLSK ; _struct_ref.pdbx_align_begin 320 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VP7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 220 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q02948 _struct_ref_seq.db_align_beg 320 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 539 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 320 _struct_ref_seq.pdbx_auth_seq_align_end 539 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VP7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '2.5M sodium acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-12-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9670 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9670 # _reflns.entry_id 3VP7 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 34.02 _reflns.d_resolution_high 2.3 _reflns.number_obs 9844 _reflns.number_all 9850 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.8 _reflns.B_iso_Wilson_estimate 32.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.325 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 946 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VP7 _refine.ls_number_reflns_obs 9484 _refine.ls_number_reflns_all 9787 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 111100.20 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 96.9 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all 0.212 _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 987 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.0 _refine.aniso_B[1][1] -3.36 _refine.aniso_B[2][2] -3.36 _refine.aniso_B[3][3] 6.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37 _refine.solvent_model_param_bsol 53.5917 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3VP7 _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1311 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1353 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 34.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.006 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.1 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 21.5 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 0.73 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 1.60 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 2.73 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 2.17 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 3.26 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1303 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs 93.8 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 11.7 _refine_ls_shell.number_reflns_R_free 172 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1475 _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 carbohydrate.param carbohydrate.top # _struct.entry_id 3VP7 _struct.title 'Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VP7 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'targeting, PI3-kinase complex I, pre-autophagosomal structure, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 33 ? LEU A 55 ? PRO A 352 LEU A 374 1 ? 23 HELX_P HELX_P2 2 MET A 67 ? PHE A 70 ? MET A 386 PHE A 389 5 ? 4 HELX_P HELX_P3 3 THR A 115 ? SER A 141 ? THR A 434 SER A 460 1 ? 27 HELX_P HELX_P4 4 ASN A 193 ? SER A 219 ? ASN A 512 SER A 538 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 10 ? SER A 13 ? ILE A 329 SER A 332 A 2 PHE A 16 ? ILE A 19 ? PHE A 335 ILE A 338 A 3 LEU A 22 ? LEU A 24 ? LEU A 341 LEU A 343 B 1 TYR A 62 ? GLN A 65 ? TYR A 381 GLN A 384 B 2 LYS A 72 ? LYS A 75 ? LYS A 391 LYS A 394 B 3 LEU A 95 ? PRO A 98 ? LEU A 414 PRO A 417 C 1 MET A 175 ? ASN A 176 ? MET A 494 ASN A 495 C 2 LYS A 179 ? ILE A 180 ? LYS A 498 ILE A 499 C 3 LEU A 183 ? SER A 184 ? LEU A 502 SER A 503 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 13 ? N SER A 332 O PHE A 16 ? O PHE A 335 A 2 3 N ILE A 19 ? N ILE A 338 O LEU A 22 ? O LEU A 341 B 1 2 N GLU A 63 ? N GLU A 382 O LYS A 74 ? O LYS A 393 B 2 3 N LYS A 75 ? N LYS A 394 O LEU A 95 ? O LEU A 414 C 1 2 N ASN A 176 ? N ASN A 495 O LYS A 179 ? O LYS A 498 C 2 3 N ILE A 180 ? N ILE A 499 O LEU A 183 ? O LEU A 502 # _database_PDB_matrix.entry_id 3VP7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VP7 _atom_sites.fract_transf_matrix[1][1] 0.016678 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016678 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008774 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 320 320 ILE ILE A . n A 1 2 ASN 2 321 321 ASN ASN A . n A 1 3 ILE 3 322 322 ILE ILE A . n A 1 4 PHE 4 323 323 PHE PHE A . n A 1 5 ASN 5 324 324 ASN ASN A . n A 1 6 ALA 6 325 325 ALA ALA A . n A 1 7 THR 7 326 326 THR THR A . n A 1 8 PHE 8 327 327 PHE PHE A . n A 1 9 LYS 9 328 328 LYS LYS A . n A 1 10 ILE 10 329 329 ILE ILE A . n A 1 11 SER 11 330 330 SER SER A . n A 1 12 HIS 12 331 331 HIS HIS A . n A 1 13 SER 13 332 332 SER SER A . n A 1 14 GLY 14 333 333 GLY GLY A . n A 1 15 PRO 15 334 334 PRO PRO A . n A 1 16 PHE 16 335 335 PHE PHE A . n A 1 17 ALA 17 336 336 ALA ALA A . n A 1 18 THR 18 337 337 THR THR A . n A 1 19 ILE 19 338 338 ILE ILE A . n A 1 20 ASN 20 339 339 ASN ASN A . n A 1 21 GLY 21 340 340 GLY GLY A . n A 1 22 LEU 22 341 341 LEU LEU A . n A 1 23 ARG 23 342 342 ARG ARG A . n A 1 24 LEU 24 343 343 LEU LEU A . n A 1 25 GLY 25 344 344 GLY GLY A . n A 1 26 SER 26 345 345 SER SER A . n A 1 27 ILE 27 346 346 ILE ILE A . n A 1 28 PRO 28 347 347 PRO PRO A . n A 1 29 GLU 29 348 348 GLU GLU A . n A 1 30 SER 30 349 349 SER SER A . n A 1 31 VAL 31 350 350 VAL VAL A . n A 1 32 VAL 32 351 351 VAL VAL A . n A 1 33 PRO 33 352 352 PRO PRO A . n A 1 34 TRP 34 353 353 TRP TRP A . n A 1 35 LYS 35 354 354 LYS LYS A . n A 1 36 GLU 36 355 355 GLU GLU A . n A 1 37 ILE 37 356 356 ILE ILE A . n A 1 38 ASN 38 357 357 ASN ASN A . n A 1 39 ALA 39 358 358 ALA ALA A . n A 1 40 ALA 40 359 359 ALA ALA A . n A 1 41 LEU 41 360 360 LEU LEU A . n A 1 42 GLY 42 361 361 GLY GLY A . n A 1 43 GLN 43 362 362 GLN GLN A . n A 1 44 LEU 44 363 363 LEU LEU A . n A 1 45 ILE 45 364 364 ILE ILE A . n A 1 46 LEU 46 365 365 LEU LEU A . n A 1 47 LEU 47 366 366 LEU LEU A . n A 1 48 LEU 48 367 367 LEU LEU A . n A 1 49 ALA 49 368 368 ALA ALA A . n A 1 50 THR 50 369 369 THR THR A . n A 1 51 ILE 51 370 370 ILE ILE A . n A 1 52 ASN 52 371 371 ASN ASN A . n A 1 53 LYS 53 372 372 LYS LYS A . n A 1 54 ASN 54 373 373 ASN ASN A . n A 1 55 LEU 55 374 374 LEU LEU A . n A 1 56 LYS 56 375 375 LYS LYS A . n A 1 57 ILE 57 376 376 ILE ILE A . n A 1 58 ASN 58 377 377 ASN ASN A . n A 1 59 LEU 59 378 378 LEU LEU A . n A 1 60 VAL 60 379 379 VAL VAL A . n A 1 61 ASP 61 380 380 ASP ASP A . n A 1 62 TYR 62 381 381 TYR TYR A . n A 1 63 GLU 63 382 382 GLU GLU A . n A 1 64 LEU 64 383 383 LEU LEU A . n A 1 65 GLN 65 384 384 GLN GLN A . n A 1 66 PRO 66 385 385 PRO PRO A . n A 1 67 MET 67 386 386 MET MET A . n A 1 68 GLY 68 387 387 GLY GLY A . n A 1 69 SER 69 388 388 SER SER A . n A 1 70 PHE 70 389 389 PHE PHE A . n A 1 71 SER 71 390 390 SER SER A . n A 1 72 LYS 72 391 391 LYS LYS A . n A 1 73 ILE 73 392 392 ILE ILE A . n A 1 74 LYS 74 393 393 LYS LYS A . n A 1 75 LYS 75 394 394 LYS LYS A . n A 1 76 ARG 76 395 395 ARG ARG A . n A 1 77 MET 77 396 396 MET MET A . n A 1 78 VAL 78 397 ? ? ? A . n A 1 79 ASN 79 398 ? ? ? A . n A 1 80 SER 80 399 ? ? ? A . n A 1 81 VAL 81 400 ? ? ? A . n A 1 82 GLU 82 401 ? ? ? A . n A 1 83 TYR 83 402 ? ? ? A . n A 1 84 ASN 84 403 ? ? ? A . n A 1 85 ASN 85 404 ? ? ? A . n A 1 86 SER 86 405 ? ? ? A . n A 1 87 THR 87 406 ? ? ? A . n A 1 88 THR 88 407 ? ? ? A . n A 1 89 ASN 89 408 ? ? ? A . n A 1 90 ALA 90 409 ? ? ? A . n A 1 91 PRO 91 410 ? ? ? A . n A 1 92 GLY 92 411 ? ? ? A . n A 1 93 ASP 93 412 412 ASP ASP A . n A 1 94 TRP 94 413 413 TRP TRP A . n A 1 95 LEU 95 414 414 LEU LEU A . n A 1 96 ILE 96 415 415 ILE ILE A . n A 1 97 LEU 97 416 416 LEU LEU A . n A 1 98 PRO 98 417 417 PRO PRO A . n A 1 99 VAL 99 418 418 VAL VAL A . n A 1 100 TYR 100 419 419 TYR TYR A . n A 1 101 TYR 101 420 420 TYR TYR A . n A 1 102 ASP 102 421 421 ASP ASP A . n A 1 103 GLU 103 422 ? ? ? A . n A 1 104 ASN 104 423 ? ? ? A . n A 1 105 PHE 105 424 ? ? ? A . n A 1 106 ASN 106 425 ? ? ? A . n A 1 107 LEU 107 426 ? ? ? A . n A 1 108 GLY 108 427 ? ? ? A . n A 1 109 ARG 109 428 ? ? ? A . n A 1 110 ILE 110 429 ? ? ? A . n A 1 111 PHE 111 430 ? ? ? A . n A 1 112 ARG 112 431 ? ? ? A . n A 1 113 LYS 113 432 ? ? ? A . n A 1 114 GLU 114 433 433 GLU GLU A . n A 1 115 THR 115 434 434 THR THR A . n A 1 116 LYS 116 435 435 LYS LYS A . n A 1 117 PHE 117 436 436 PHE PHE A . n A 1 118 ASP 118 437 437 ASP ASP A . n A 1 119 LYS 119 438 438 LYS LYS A . n A 1 120 SER 120 439 439 SER SER A . n A 1 121 LEU 121 440 440 LEU LEU A . n A 1 122 GLU 122 441 441 GLU GLU A . n A 1 123 THR 123 442 442 THR THR A . n A 1 124 THR 124 443 443 THR THR A . n A 1 125 LEU 125 444 444 LEU LEU A . n A 1 126 GLU 126 445 445 GLU GLU A . n A 1 127 ILE 127 446 446 ILE ILE A . n A 1 128 ILE 128 447 447 ILE ILE A . n A 1 129 SER 129 448 448 SER SER A . n A 1 130 GLU 130 449 449 GLU GLU A . n A 1 131 ILE 131 450 450 ILE ILE A . n A 1 132 THR 132 451 451 THR THR A . n A 1 133 ARG 133 452 452 ARG ARG A . n A 1 134 GLN 134 453 453 GLN GLN A . n A 1 135 LEU 135 454 454 LEU LEU A . n A 1 136 SER 136 455 455 SER SER A . n A 1 137 THR 137 456 456 THR THR A . n A 1 138 ILE 138 457 457 ILE ILE A . n A 1 139 ALA 139 458 458 ALA ALA A . n A 1 140 SER 140 459 459 SER SER A . n A 1 141 SER 141 460 460 SER SER A . n A 1 142 TYR 142 461 ? ? ? A . n A 1 143 SER 143 462 ? ? ? A . n A 1 144 SER 144 463 ? ? ? A . n A 1 145 GLN 145 464 ? ? ? A . n A 1 146 THR 146 465 ? ? ? A . n A 1 147 LEU 147 466 ? ? ? A . n A 1 148 THR 148 467 ? ? ? A . n A 1 149 THR 149 468 ? ? ? A . n A 1 150 SER 150 469 ? ? ? A . n A 1 151 GLN 151 470 ? ? ? A . n A 1 152 ASP 152 471 ? ? ? A . n A 1 153 GLU 153 472 ? ? ? A . n A 1 154 SER 154 473 ? ? ? A . n A 1 155 SER 155 474 ? ? ? A . n A 1 156 MET 156 475 ? ? ? A . n A 1 157 ASN 157 476 ? ? ? A . n A 1 158 ASN 158 477 ? ? ? A . n A 1 159 ALA 159 478 ? ? ? A . n A 1 160 ASN 160 479 ? ? ? A . n A 1 161 ASP 161 480 ? ? ? A . n A 1 162 VAL 162 481 ? ? ? A . n A 1 163 GLU 163 482 ? ? ? A . n A 1 164 ASN 164 483 ? ? ? A . n A 1 165 SER 165 484 ? ? ? A . n A 1 166 THR 166 485 ? ? ? A . n A 1 167 SER 167 486 ? ? ? A . n A 1 168 ILE 168 487 ? ? ? A . n A 1 169 LEU 169 488 488 LEU LEU A . n A 1 170 GLU 170 489 489 GLU GLU A . n A 1 171 LEU 171 490 490 LEU LEU A . n A 1 172 PRO 172 491 491 PRO PRO A . n A 1 173 TYR 173 492 492 TYR TYR A . n A 1 174 ILE 174 493 493 ILE ILE A . n A 1 175 MET 175 494 494 MET MET A . n A 1 176 ASN 176 495 495 ASN ASN A . n A 1 177 LYS 177 496 496 LYS LYS A . n A 1 178 ASP 178 497 497 ASP ASP A . n A 1 179 LYS 179 498 498 LYS LYS A . n A 1 180 ILE 180 499 499 ILE ILE A . n A 1 181 ASN 181 500 500 ASN ASN A . n A 1 182 GLY 182 501 501 GLY GLY A . n A 1 183 LEU 183 502 502 LEU LEU A . n A 1 184 SER 184 503 503 SER SER A . n A 1 185 VAL 185 504 504 VAL VAL A . n A 1 186 LYS 186 505 505 LYS LYS A . n A 1 187 LEU 187 506 506 LEU LEU A . n A 1 188 HIS 188 507 507 HIS HIS A . n A 1 189 GLY 189 508 508 GLY GLY A . n A 1 190 SER 190 509 509 SER SER A . n A 1 191 SER 191 510 510 SER SER A . n A 1 192 PRO 192 511 511 PRO PRO A . n A 1 193 ASN 193 512 512 ASN ASN A . n A 1 194 LEU 194 513 513 LEU LEU A . n A 1 195 GLU 195 514 514 GLU GLU A . n A 1 196 TRP 196 515 515 TRP TRP A . n A 1 197 THR 197 516 516 THR THR A . n A 1 198 THR 198 517 517 THR THR A . n A 1 199 ALA 199 518 518 ALA ALA A . n A 1 200 MET 200 519 519 MET MET A . n A 1 201 LYS 201 520 520 LYS LYS A . n A 1 202 PHE 202 521 521 PHE PHE A . n A 1 203 LEU 203 522 522 LEU LEU A . n A 1 204 LEU 204 523 523 LEU LEU A . n A 1 205 THR 205 524 524 THR THR A . n A 1 206 ASN 206 525 525 ASN ASN A . n A 1 207 VAL 207 526 526 VAL VAL A . n A 1 208 LYS 208 527 527 LYS LYS A . n A 1 209 TRP 209 528 528 TRP TRP A . n A 1 210 LEU 210 529 529 LEU LEU A . n A 1 211 LEU 211 530 530 LEU LEU A . n A 1 212 ALA 212 531 531 ALA ALA A . n A 1 213 PHE 213 532 532 PHE PHE A . n A 1 214 SER 214 533 533 SER SER A . n A 1 215 SER 215 534 534 SER SER A . n A 1 216 ASN 216 535 535 ASN ASN A . n A 1 217 LEU 217 536 536 LEU LEU A . n A 1 218 LEU 218 537 537 LEU LEU A . n A 1 219 SER 219 538 538 SER SER A . n A 1 220 LYS 220 539 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 601 1 HOH HOH A . B 2 HOH 2 602 2 HOH HOH A . B 2 HOH 3 603 3 HOH HOH A . B 2 HOH 4 604 4 HOH HOH A . B 2 HOH 5 605 5 HOH HOH A . B 2 HOH 6 606 6 HOH HOH A . B 2 HOH 7 607 7 HOH HOH A . B 2 HOH 8 608 8 HOH HOH A . B 2 HOH 9 609 9 HOH HOH A . B 2 HOH 10 610 10 HOH HOH A . B 2 HOH 11 611 11 HOH HOH A . B 2 HOH 12 612 12 HOH HOH A . B 2 HOH 13 613 13 HOH HOH A . B 2 HOH 14 614 14 HOH HOH A . B 2 HOH 15 615 15 HOH HOH A . B 2 HOH 16 616 16 HOH HOH A . B 2 HOH 17 617 17 HOH HOH A . B 2 HOH 18 618 18 HOH HOH A . B 2 HOH 19 619 19 HOH HOH A . B 2 HOH 20 620 20 HOH HOH A . B 2 HOH 21 621 21 HOH HOH A . B 2 HOH 22 622 22 HOH HOH A . B 2 HOH 23 623 23 HOH HOH A . B 2 HOH 24 624 24 HOH HOH A . B 2 HOH 25 625 25 HOH HOH A . B 2 HOH 26 626 26 HOH HOH A . B 2 HOH 27 627 27 HOH HOH A . B 2 HOH 28 628 28 HOH HOH A . B 2 HOH 29 629 29 HOH HOH A . B 2 HOH 30 630 30 HOH HOH A . B 2 HOH 31 631 31 HOH HOH A . B 2 HOH 32 632 32 HOH HOH A . B 2 HOH 33 633 33 HOH HOH A . B 2 HOH 34 634 34 HOH HOH A . B 2 HOH 35 635 35 HOH HOH A . B 2 HOH 36 636 36 HOH HOH A . B 2 HOH 37 637 37 HOH HOH A . B 2 HOH 38 638 38 HOH HOH A . B 2 HOH 39 639 39 HOH HOH A . B 2 HOH 40 640 40 HOH HOH A . B 2 HOH 41 641 41 HOH HOH A . B 2 HOH 42 642 42 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1800 ? 2 MORE -18 ? 2 'SSA (A^2)' 14680 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 59.9590000000 -1.0000000000 0.0000000000 0.0000000000 59.9590000000 0.0000000000 0.0000000000 -1.0000000000 56.9885000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 626 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-14 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 CNS refinement 1.3 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 330 ? ? -145.34 -151.60 2 1 SER A 345 ? ? -173.26 140.43 3 1 MET A 386 ? ? -154.63 48.19 4 1 LYS A 496 ? ? 59.48 -123.89 5 1 HIS A 507 ? ? 39.03 58.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 433 ? CG ? A GLU 114 CG 2 1 Y 1 A GLU 433 ? CD ? A GLU 114 CD 3 1 Y 1 A GLU 433 ? OE1 ? A GLU 114 OE1 4 1 Y 1 A GLU 433 ? OE2 ? A GLU 114 OE2 5 1 Y 1 A SER 460 ? OG ? A SER 141 OG 6 1 Y 1 A SER 509 ? OG ? A SER 190 OG 7 1 Y 1 A SER 538 ? OG ? A SER 219 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 397 ? A VAL 78 2 1 Y 1 A ASN 398 ? A ASN 79 3 1 Y 1 A SER 399 ? A SER 80 4 1 Y 1 A VAL 400 ? A VAL 81 5 1 Y 1 A GLU 401 ? A GLU 82 6 1 Y 1 A TYR 402 ? A TYR 83 7 1 Y 1 A ASN 403 ? A ASN 84 8 1 Y 1 A ASN 404 ? A ASN 85 9 1 Y 1 A SER 405 ? A SER 86 10 1 Y 1 A THR 406 ? A THR 87 11 1 Y 1 A THR 407 ? A THR 88 12 1 Y 1 A ASN 408 ? A ASN 89 13 1 Y 1 A ALA 409 ? A ALA 90 14 1 Y 1 A PRO 410 ? A PRO 91 15 1 Y 1 A GLY 411 ? A GLY 92 16 1 Y 1 A GLU 422 ? A GLU 103 17 1 Y 1 A ASN 423 ? A ASN 104 18 1 Y 1 A PHE 424 ? A PHE 105 19 1 Y 1 A ASN 425 ? A ASN 106 20 1 Y 1 A LEU 426 ? A LEU 107 21 1 Y 1 A GLY 427 ? A GLY 108 22 1 Y 1 A ARG 428 ? A ARG 109 23 1 Y 1 A ILE 429 ? A ILE 110 24 1 Y 1 A PHE 430 ? A PHE 111 25 1 Y 1 A ARG 431 ? A ARG 112 26 1 Y 1 A LYS 432 ? A LYS 113 27 1 Y 1 A TYR 461 ? A TYR 142 28 1 Y 1 A SER 462 ? A SER 143 29 1 Y 1 A SER 463 ? A SER 144 30 1 Y 1 A GLN 464 ? A GLN 145 31 1 Y 1 A THR 465 ? A THR 146 32 1 Y 1 A LEU 466 ? A LEU 147 33 1 Y 1 A THR 467 ? A THR 148 34 1 Y 1 A THR 468 ? A THR 149 35 1 Y 1 A SER 469 ? A SER 150 36 1 Y 1 A GLN 470 ? A GLN 151 37 1 Y 1 A ASP 471 ? A ASP 152 38 1 Y 1 A GLU 472 ? A GLU 153 39 1 Y 1 A SER 473 ? A SER 154 40 1 Y 1 A SER 474 ? A SER 155 41 1 Y 1 A MET 475 ? A MET 156 42 1 Y 1 A ASN 476 ? A ASN 157 43 1 Y 1 A ASN 477 ? A ASN 158 44 1 Y 1 A ALA 478 ? A ALA 159 45 1 Y 1 A ASN 479 ? A ASN 160 46 1 Y 1 A ASP 480 ? A ASP 161 47 1 Y 1 A VAL 481 ? A VAL 162 48 1 Y 1 A GLU 482 ? A GLU 163 49 1 Y 1 A ASN 483 ? A ASN 164 50 1 Y 1 A SER 484 ? A SER 165 51 1 Y 1 A THR 485 ? A THR 166 52 1 Y 1 A SER 486 ? A SER 167 53 1 Y 1 A ILE 487 ? A ILE 168 54 1 Y 1 A LYS 539 ? A LYS 220 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #