HEADER    PROTEIN TRANSPORT                       28-FEB-12   3VP7              
TITLE     CRYSTAL STRUCTURE OF THE BETA-ALPHA REPEATED, AUTOPHAGY-SPECIFIC      
TITLE    2 (BARA) DOMAIN OF VPS30/ATG6                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 30;            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 320-539;                   
COMPND   5 SYNONYM: AUTOPHAGY-RELATED PROTEIN 6;                                
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 559292;                                              
SOURCE   5 STRAIN: ATCC 204508 / S288C;                                         
SOURCE   6 GENE: VPS30, APG6, ATG6, VPT30, YPL120W, LPH7;                       
SOURCE   7 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE  10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  11 EXPRESSION_SYSTEM_PLASMID: PGEX6P                                    
KEYWDS    TARGETING, PI3-KINASE COMPLEX I, PRE-AUTOPHAGOSOMAL STRUCTURE,        
KEYWDS   2 PROTEIN TRANSPORT                                                    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    N.N.NODA,T.KOBAYASHI,W.ADACHI,Y.FUJIOKA,Y.OHSUMI,F.INAGAKI            
REVDAT   2   18-OCT-23 3VP7    1       JRNL                                     
REVDAT   1   14-MAR-12 3VP7    0                                                
JRNL        AUTH   N.N.NODA,T.KOBAYASHI,W.ADACHI,Y.FUJIOKA,Y.OHSUMI,F.INAGAKI   
JRNL        TITL   STRUCTURE OF THE NOVEL C-TERMINAL DOMAIN OF VACUOLAR PROTEIN 
JRNL        TITL 2 SORTING 30/AUTOPHAGY-RELATED PROTEIN 6 AND ITS SPECIFIC ROLE 
JRNL        TITL 3 IN AUTOPHAGY.                                                
JRNL        REF    J.BIOL.CHEM.                  V. 287 16256 2012              
JRNL        REFN                   ESSN 1083-351X                               
JRNL        PMID   22437838                                                     
JRNL        DOI    10.1074/JBC.M112.348250                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.30 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.3                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 111100.200                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 96.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 9484                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.209                           
REMARK   3   FREE R VALUE                     : 0.243                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.400                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 987                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.008                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.30                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.44                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 93.80                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 1303                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2330                       
REMARK   3   BIN FREE R VALUE                    : 0.2770                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 11.70                        
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 172                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.021                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1311                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 42                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 32.90                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 48.00                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.36000                                             
REMARK   3    B22 (A**2) : -3.36000                                             
REMARK   3    B33 (A**2) : 6.71000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.27                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.19                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.34                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.25                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.100                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 21.50                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.730                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.600 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.730 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.170 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.260 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.37                                                 
REMARK   3   BSOL        : 53.59                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_REP.PARAM                              
REMARK   3  PARAMETER FILE  3  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : CARBOHYDRATE.PARAM                             
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : CARBOHYDRATE.TOP                               
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED                   
REMARK   4                                                                      
REMARK   4 3VP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-12.                  
REMARK 100 THE DEPOSITION ID IS D_1000095327.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-DEC-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 95                                 
REMARK 200  PH                             : 4.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : PHOTON FACTORY                     
REMARK 200  BEAMLINE                       : BL-5A                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9670                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 9844                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.300                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 34.020                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : 0.07400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.8000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.38                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.32500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 40.73                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M SODIUM ACETATE, PH 4.5, VAPOR       
REMARK 280  DIFFUSION, SITTING DROP, TEMPERATURE 293K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       56.98850            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       29.97950            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       29.97950            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       28.49425            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       29.97950            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       29.97950            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       85.48275            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       29.97950            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       29.97950            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       28.49425            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       29.97950            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       29.97950            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       85.48275            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       56.98850            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  0.000000 -1.000000  0.000000       59.95900            
REMARK 350   BIOMT2   2 -1.000000  0.000000  0.000000       59.95900            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000       56.98850            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 626  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     VAL A   397                                                      
REMARK 465     ASN A   398                                                      
REMARK 465     SER A   399                                                      
REMARK 465     VAL A   400                                                      
REMARK 465     GLU A   401                                                      
REMARK 465     TYR A   402                                                      
REMARK 465     ASN A   403                                                      
REMARK 465     ASN A   404                                                      
REMARK 465     SER A   405                                                      
REMARK 465     THR A   406                                                      
REMARK 465     THR A   407                                                      
REMARK 465     ASN A   408                                                      
REMARK 465     ALA A   409                                                      
REMARK 465     PRO A   410                                                      
REMARK 465     GLY A   411                                                      
REMARK 465     GLU A   422                                                      
REMARK 465     ASN A   423                                                      
REMARK 465     PHE A   424                                                      
REMARK 465     ASN A   425                                                      
REMARK 465     LEU A   426                                                      
REMARK 465     GLY A   427                                                      
REMARK 465     ARG A   428                                                      
REMARK 465     ILE A   429                                                      
REMARK 465     PHE A   430                                                      
REMARK 465     ARG A   431                                                      
REMARK 465     LYS A   432                                                      
REMARK 465     TYR A   461                                                      
REMARK 465     SER A   462                                                      
REMARK 465     SER A   463                                                      
REMARK 465     GLN A   464                                                      
REMARK 465     THR A   465                                                      
REMARK 465     LEU A   466                                                      
REMARK 465     THR A   467                                                      
REMARK 465     THR A   468                                                      
REMARK 465     SER A   469                                                      
REMARK 465     GLN A   470                                                      
REMARK 465     ASP A   471                                                      
REMARK 465     GLU A   472                                                      
REMARK 465     SER A   473                                                      
REMARK 465     SER A   474                                                      
REMARK 465     MET A   475                                                      
REMARK 465     ASN A   476                                                      
REMARK 465     ASN A   477                                                      
REMARK 465     ALA A   478                                                      
REMARK 465     ASN A   479                                                      
REMARK 465     ASP A   480                                                      
REMARK 465     VAL A   481                                                      
REMARK 465     GLU A   482                                                      
REMARK 465     ASN A   483                                                      
REMARK 465     SER A   484                                                      
REMARK 465     THR A   485                                                      
REMARK 465     SER A   486                                                      
REMARK 465     ILE A   487                                                      
REMARK 465     LYS A   539                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 433    CG   CD   OE1  OE2                                  
REMARK 470     SER A 460    OG                                                  
REMARK 470     SER A 509    OG                                                  
REMARK 470     SER A 538    OG                                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER A 330     -151.60   -145.34                                   
REMARK 500    SER A 345      140.43   -173.26                                   
REMARK 500    MET A 386       48.19   -154.63                                   
REMARK 500    LYS A 496     -123.89     59.48                                   
REMARK 500    HIS A 507       58.53     39.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  3VP7 A  320   539  UNP    Q02948   VPS30_YEAST    320    539             
SEQRES   1 A  220  ILE ASN ILE PHE ASN ALA THR PHE LYS ILE SER HIS SER          
SEQRES   2 A  220  GLY PRO PHE ALA THR ILE ASN GLY LEU ARG LEU GLY SER          
SEQRES   3 A  220  ILE PRO GLU SER VAL VAL PRO TRP LYS GLU ILE ASN ALA          
SEQRES   4 A  220  ALA LEU GLY GLN LEU ILE LEU LEU LEU ALA THR ILE ASN          
SEQRES   5 A  220  LYS ASN LEU LYS ILE ASN LEU VAL ASP TYR GLU LEU GLN          
SEQRES   6 A  220  PRO MET GLY SER PHE SER LYS ILE LYS LYS ARG MET VAL          
SEQRES   7 A  220  ASN SER VAL GLU TYR ASN ASN SER THR THR ASN ALA PRO          
SEQRES   8 A  220  GLY ASP TRP LEU ILE LEU PRO VAL TYR TYR ASP GLU ASN          
SEQRES   9 A  220  PHE ASN LEU GLY ARG ILE PHE ARG LYS GLU THR LYS PHE          
SEQRES  10 A  220  ASP LYS SER LEU GLU THR THR LEU GLU ILE ILE SER GLU          
SEQRES  11 A  220  ILE THR ARG GLN LEU SER THR ILE ALA SER SER TYR SER          
SEQRES  12 A  220  SER GLN THR LEU THR THR SER GLN ASP GLU SER SER MET          
SEQRES  13 A  220  ASN ASN ALA ASN ASP VAL GLU ASN SER THR SER ILE LEU          
SEQRES  14 A  220  GLU LEU PRO TYR ILE MET ASN LYS ASP LYS ILE ASN GLY          
SEQRES  15 A  220  LEU SER VAL LYS LEU HIS GLY SER SER PRO ASN LEU GLU          
SEQRES  16 A  220  TRP THR THR ALA MET LYS PHE LEU LEU THR ASN VAL LYS          
SEQRES  17 A  220  TRP LEU LEU ALA PHE SER SER ASN LEU LEU SER LYS              
FORMUL   2  HOH   *42(H2 O)                                                     
HELIX    1   1 PRO A  352  LEU A  374  1                                  23    
HELIX    2   2 MET A  386  PHE A  389  5                                   4    
HELIX    3   3 THR A  434  SER A  460  1                                  27    
HELIX    4   4 ASN A  512  SER A  538  1                                  27    
SHEET    1   A 3 ILE A 329  SER A 332  0                                        
SHEET    2   A 3 PHE A 335  ILE A 338 -1  O  PHE A 335   N  SER A 332           
SHEET    3   A 3 LEU A 341  LEU A 343 -1  O  LEU A 341   N  ILE A 338           
SHEET    1   B 3 TYR A 381  GLN A 384  0                                        
SHEET    2   B 3 LYS A 391  LYS A 394 -1  O  LYS A 393   N  GLU A 382           
SHEET    3   B 3 LEU A 414  PRO A 417 -1  O  LEU A 414   N  LYS A 394           
SHEET    1   C 3 MET A 494  ASN A 495  0                                        
SHEET    2   C 3 LYS A 498  ILE A 499 -1  O  LYS A 498   N  ASN A 495           
SHEET    3   C 3 LEU A 502  SER A 503 -1  O  LEU A 502   N  ILE A 499           
CRYST1   59.959   59.959  113.977  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016678  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.016678  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008774        0.00000