HEADER TRANSFERASE 08-MAR-12 3VPQ TITLE CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE TITLE 2 IN COMPLEX WITH GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE SIGMA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: GST SIGMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA-BARREL, TRANSFERASE, GLUTATHIONE EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,A.HIGASHIURA,A.NAKAGAWA,M.SUZUKI REVDAT 3 08-NOV-23 3VPQ 1 REMARK REVDAT 2 31-JUL-13 3VPQ 1 JRNL REVDAT 1 06-MAR-13 3VPQ 0 JRNL AUTH K.YAMAMOTO,A.HIGASHIURA,M.SUZUKI,K.ARITAKE,Y.URADE,N.UODOME, JRNL AUTH 2 A.NAKAGAWA JRNL TITL CRYSTAL STRUCTURE OF A BOMBYX MORI SIGMA-CLASS GLUTATHIONE JRNL TITL 2 TRANSFERASE EXHIBITING PROSTAGLANDIN E SYNTHASE ACTIVITY JRNL REF BIOCHIM.BIOPHYS.ACTA V.1830 3711 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 23458683 JRNL DOI 10.1016/J.BBAGEN.2013.02.021 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6001 - 3.4034 0.99 2912 138 0.1969 0.2403 REMARK 3 2 3.4034 - 2.7017 1.00 2693 143 0.1618 0.2189 REMARK 3 3 2.7017 - 2.3602 1.00 2651 147 0.1702 0.1856 REMARK 3 4 2.3602 - 2.1445 1.00 2616 154 0.1730 0.2223 REMARK 3 5 2.1445 - 1.9908 1.00 2610 142 0.1854 0.2043 REMARK 3 6 1.9908 - 1.8734 1.00 2579 139 0.2105 0.2399 REMARK 3 7 1.8734 - 1.7796 1.00 2596 155 0.2324 0.3004 REMARK 3 8 1.7796 - 1.7021 0.97 2500 115 0.2621 0.2881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.50 REMARK 3 SHRINKAGE RADIUS : 0.29 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 54.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85380 REMARK 3 B22 (A**2) : 1.85380 REMARK 3 B33 (A**2) : -3.70770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1784 REMARK 3 ANGLE : 1.533 2387 REMARK 3 CHIRALITY : 0.098 249 REMARK 3 PLANARITY : 0.009 306 REMARK 3 DIHEDRAL : 20.455 669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:35) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0690 -33.7152 14.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.6335 T22: 0.1688 REMARK 3 T33: 0.2734 T12: -0.0165 REMARK 3 T13: 0.0663 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.3929 L22: 1.5901 REMARK 3 L33: 2.6887 L12: -0.2411 REMARK 3 L13: -0.2350 L23: -0.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: -0.0625 S13: -0.3211 REMARK 3 S21: -0.0764 S22: -0.0259 S23: -0.3386 REMARK 3 S31: 1.3452 S32: -0.0947 S33: 0.1304 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 36:52) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9921 -28.7201 25.9098 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.2782 REMARK 3 T33: 0.2157 T12: -0.0765 REMARK 3 T13: 0.0071 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.7473 L22: 4.0953 REMARK 3 L33: 2.7649 L12: 1.1473 REMARK 3 L13: -0.0431 L23: 0.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.1587 S13: -0.1649 REMARK 3 S21: -0.4284 S22: 0.1201 S23: -0.0460 REMARK 3 S31: 0.4325 S32: -0.6911 S33: 0.0088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 53:81) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2516 -28.9879 17.9146 REMARK 3 T TENSOR REMARK 3 T11: 0.4359 T22: 0.3063 REMARK 3 T33: 0.2525 T12: 0.2038 REMARK 3 T13: 0.0460 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 1.9409 L22: 1.7356 REMARK 3 L33: 0.7317 L12: -0.1630 REMARK 3 L13: 0.1059 L23: 1.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: -0.1456 S13: -0.1076 REMARK 3 S21: 0.1426 S22: -0.1542 S23: -0.0144 REMARK 3 S31: 0.7836 S32: 0.5497 S33: 0.1086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 82:106) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8042 -13.8728 10.5785 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.2592 REMARK 3 T33: 0.3010 T12: 0.0280 REMARK 3 T13: 0.0070 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.6231 L22: 1.3111 REMARK 3 L33: 2.6099 L12: -0.3991 REMARK 3 L13: -0.4348 L23: -0.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.1170 S13: 0.1392 REMARK 3 S21: -0.1497 S22: -0.0174 S23: 0.0808 REMARK 3 S31: 0.2120 S32: 0.1669 S33: 0.0511 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 107:124) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0449 -5.0224 9.9834 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.6188 REMARK 3 T33: 0.5524 T12: 0.0909 REMARK 3 T13: -0.0681 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 3.3588 L22: 2.6370 REMARK 3 L33: 4.9933 L12: -1.8278 REMARK 3 L13: -0.4921 L23: 0.7514 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0136 S13: -0.0177 REMARK 3 S21: -0.0044 S22: -0.3632 S23: 0.3884 REMARK 3 S31: -0.6159 S32: -1.5989 S33: 0.3371 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 125:139) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3535 -8.3410 0.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.2373 REMARK 3 T33: 0.2648 T12: -0.0197 REMARK 3 T13: -0.0291 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.7638 L22: 3.6271 REMARK 3 L33: 2.4494 L12: -2.5074 REMARK 3 L13: -2.0762 L23: 1.6942 REMARK 3 S TENSOR REMARK 3 S11: 0.2853 S12: -0.2051 S13: -0.1691 REMARK 3 S21: -0.3727 S22: -0.1700 S23: 0.1168 REMARK 3 S31: -0.4132 S32: 0.1204 S33: -0.0589 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 140:167) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5172 -20.4974 4.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.2275 REMARK 3 T33: 0.2766 T12: 0.0404 REMARK 3 T13: 0.0045 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.7765 L22: 1.0832 REMARK 3 L33: 3.0118 L12: 0.9155 REMARK 3 L13: -0.4982 L23: -0.4328 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: 0.1685 S13: 0.3625 REMARK 3 S21: -0.1536 S22: 0.0030 S23: 0.0712 REMARK 3 S31: 0.5966 S32: -0.0179 S33: 0.0077 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 168:176) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0252 -13.2561 -3.7866 REMARK 3 T TENSOR REMARK 3 T11: 0.5785 T22: 0.5432 REMARK 3 T33: 0.6321 T12: 0.0014 REMARK 3 T13: -0.3135 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.6131 L22: 2.9115 REMARK 3 L33: 3.2830 L12: -0.8216 REMARK 3 L13: -1.4544 L23: 1.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: -0.1221 S13: -0.0469 REMARK 3 S21: 0.0637 S22: -0.1825 S23: 1.2639 REMARK 3 S31: -0.1812 S32: -0.8247 S33: 0.1156 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 177:187) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3116 -22.7767 -3.3174 REMARK 3 T TENSOR REMARK 3 T11: 0.5183 T22: 0.2506 REMARK 3 T33: 0.3237 T12: 0.0100 REMARK 3 T13: -0.0057 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.0669 L22: 3.1304 REMARK 3 L33: 2.0286 L12: -1.8273 REMARK 3 L13: 1.4659 L23: -2.5187 REMARK 3 S TENSOR REMARK 3 S11: 0.2603 S12: 0.0722 S13: -0.1167 REMARK 3 S21: -1.0586 S22: -0.2954 S23: 0.5645 REMARK 3 S31: 0.8948 S32: -0.2151 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1545 -33.7341 2.7933 REMARK 3 T TENSOR REMARK 3 T11: 0.8257 T22: 0.2543 REMARK 3 T33: 0.3345 T12: 0.0096 REMARK 3 T13: 0.1045 T23: -0.1159 REMARK 3 L TENSOR REMARK 3 L11: 1.9442 L22: 1.5955 REMARK 3 L33: 1.3340 L12: -1.0144 REMARK 3 L13: -1.3399 L23: 1.3598 REMARK 3 S TENSOR REMARK 3 S11: -0.1792 S12: 0.1552 S13: -0.1954 REMARK 3 S21: -0.3375 S22: -0.1256 S23: 0.0554 REMARK 3 S31: 0.8482 S32: -0.1411 S33: 0.5629 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000095346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22392 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.592 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH7.5, CONTAINING 30% PEG REMARK 280 400, 20% 1,2-PROPANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.49600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.74800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.62200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.87400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 174.37000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 139.49600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.74800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.87400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.62200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 174.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.87400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 180 O1 PGO A 308 8445 2.14 REMARK 500 OH TYR A 70 OE2 GLU A 83 10555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 -112.80 29.44 REMARK 500 GLN A 63 101.40 78.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 313 DBREF 3VPQ A 1 204 UNP Q5CCJ4 Q5CCJ4_BOMMO 1 204 SEQRES 1 A 204 MET PRO ASN VAL LYS PHE TYR TYR PHE PRO VAL LYS ALA SEQRES 2 A 204 LEU GLY GLU SER GLN ARG LEU LEU LEU ALA TYR GLY GLY SEQRES 3 A 204 GLN GLU PHE GLU ASP ASN ARG ILE SER SER GLU ASN TRP SEQRES 4 A 204 PRO GLU PHE LYS PRO LYS THR PRO PHE GLY GLN MET PRO SEQRES 5 A 204 VAL LEU GLU ILE ASP GLY LYS GLN TYR ALA GLN SER THR SEQRES 6 A 204 ALA ILE CYS ARG TYR LEU GLY ARG LYS TYR GLY LEU ALA SEQRES 7 A 204 GLY ALA ASN ASP GLU GLU ALA PHE GLU ILE ASP GLN ASN SEQRES 8 A 204 VAL GLU PHE LEU ASN ASP ILE ARG ALA SER ALA ALA SER SEQRES 9 A 204 VAL HIS TYR GLU LYS ASP GLU ALA VAL LYS ALA LYS LYS SEQRES 10 A 204 LYS ALA GLU LEU GLU GLU THR LYS TYR PRO PHE PHE PHE SEQRES 11 A 204 GLU LYS LEU ASN GLU ILE LEU THR LYS ASN ASN GLY HIS SEQRES 12 A 204 ILE ALA LEU GLY LYS LEU THR TRP GLY ASP PHE VAL TYR SEQRES 13 A 204 ALA GLY MET TYR ASP TYR LEU LYS ALA MET LEU GLN LYS SEQRES 14 A 204 PRO ASP LEU GLU GLN LYS TYR PRO ALA PHE ARG LYS PRO SEQRES 15 A 204 ILE GLU ALA VAL LEU ALA ILE PRO LYS VAL LYS ALA TYR SEQRES 16 A 204 VAL ASP ALA ALA PRO ARG THR GLU LEU HET GSH A 301 35 HET PGO A 302 13 HET PGO A 303 13 HET PGO A 304 13 HET PGO A 305 13 HET PEG A 306 17 HET PGO A 307 13 HET PGO A 308 13 HET PGO A 309 13 HET PGO A 310 13 HET PGO A 311 13 HET PGO A 312 13 HET 1PE A 313 38 HETNAM GSH GLUTATHIONE HETNAM PGO S-1,2-PROPANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 GSH C10 H17 N3 O6 S FORMUL 3 PGO 10(C3 H8 O2) FORMUL 7 PEG C4 H10 O3 FORMUL 14 1PE C10 H22 O6 FORMUL 15 HOH *69(H2 O) HELIX 1 1 GLY A 15 GLY A 25 1 11 HELIX 2 2 ASN A 38 LYS A 43 1 6 HELIX 3 3 PRO A 44 THR A 46 5 3 HELIX 4 4 GLN A 63 TYR A 75 1 13 HELIX 5 5 ASN A 81 TYR A 107 1 27 HELIX 6 6 ASP A 110 LYS A 125 1 16 HELIX 7 7 LYS A 125 ASN A 140 1 16 HELIX 8 8 THR A 150 GLN A 168 1 19 HELIX 9 9 ASP A 171 TYR A 176 1 6 HELIX 10 10 PRO A 177 PHE A 179 5 3 HELIX 11 11 ARG A 180 ALA A 188 1 9 HELIX 12 12 ILE A 189 ALA A 199 1 11 SHEET 1 A 4 GLU A 30 ARG A 33 0 SHEET 2 A 4 VAL A 4 TYR A 8 1 N PHE A 6 O GLU A 30 SHEET 3 A 4 VAL A 53 ILE A 56 -1 O GLU A 55 N LYS A 5 SHEET 4 A 4 LYS A 59 ALA A 62 -1 O TYR A 61 N LEU A 54 CISPEP 1 MET A 51 PRO A 52 0 11.64 SITE 1 AC1 15 TYR A 8 PHE A 9 LEU A 14 TRP A 39 SITE 2 AC1 15 LYS A 43 GLN A 50 MET A 51 PRO A 52 SITE 3 AC1 15 GLN A 63 SER A 64 GLU A 93 ASP A 97 SITE 4 AC1 15 PGO A 305 HOH A 407 HOH A 463 SITE 1 AC2 3 TYR A 75 ASP A 171 GLN A 174 SITE 1 AC3 7 PRO A 47 PHE A 48 GLN A 90 GLU A 135 SITE 2 AC3 7 LYS A 139 HOH A 409 HOH A 425 SITE 1 AC4 5 PRO A 44 LYS A 45 THR A 46 GLU A 135 SITE 2 AC4 5 PGO A 309 SITE 1 AC5 7 GLU A 93 ASN A 96 ASP A 97 ARG A 99 SITE 2 AC5 7 GSH A 301 HOH A 419 HOH A 463 SITE 1 AC6 2 SER A 101 LYS A 125 SITE 1 AC7 1 HOH A 428 SITE 1 AC8 6 ASN A 81 GLU A 84 ARG A 180 ILE A 183 SITE 2 AC8 6 GLU A 184 LEU A 187 SITE 1 AC9 8 LYS A 43 THR A 46 PRO A 47 PHE A 48 SITE 2 AC9 8 GLY A 49 LYS A 132 PGO A 304 HOH A 448 SITE 1 BC1 4 PRO A 2 GLN A 27 LYS A 74 TYR A 75 SITE 1 BC2 5 ASN A 141 LYS A 181 ALA A 185 GLU A 203 SITE 2 BC2 5 1PE A 313 SITE 1 BC3 2 LYS A 12 ASP A 161 SITE 1 BC4 6 ASN A 141 GLY A 142 ALA A 178 LYS A 181 SITE 2 BC4 6 PGO A 311 HOH A 459 CRYST1 56.081 56.081 209.244 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017831 0.010295 0.000000 0.00000 SCALE2 0.000000 0.020590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004779 0.00000