HEADER TRANSFERASE 13-MAR-12 3VPT TITLE CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE TITLE 2 IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE SIGMA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: GST SIGMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, GSH BINDING, CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,A.HIGASHIURA,M.SUZUKI,A.NAKAGAWA REVDAT 3 20-MAR-24 3VPT 1 REMARK REVDAT 2 31-JUL-13 3VPT 1 JRNL REVDAT 1 06-MAR-13 3VPT 0 JRNL AUTH K.YAMAMOTO,A.HIGASHIURA,M.SUZUKI,K.ARITAKE,Y.URADE,N.UODOME, JRNL AUTH 2 A.NAKAGAWA JRNL TITL CRYSTAL STRUCTURE OF A BOMBYX MORI SIGMA-CLASS GLUTATHIONE JRNL TITL 2 TRANSFERASE EXHIBITING PROSTAGLANDIN E SYNTHASE ACTIVITY JRNL REF BIOCHIM.BIOPHYS.ACTA V.1830 3711 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 23458683 JRNL DOI 10.1016/J.BBAGEN.2013.02.021 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 16203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1141 - 3.4506 0.94 2652 136 0.2230 0.2706 REMARK 3 2 3.4506 - 2.7397 1.00 2641 117 0.1742 0.2116 REMARK 3 3 2.7397 - 2.3936 1.00 2558 135 0.1919 0.2395 REMARK 3 4 2.3936 - 2.1749 1.00 2542 130 0.1899 0.2529 REMARK 3 5 2.1749 - 2.0190 1.00 2495 151 0.1949 0.2812 REMARK 3 6 2.0190 - 1.9000 1.00 2511 135 0.2207 0.2635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 55.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04520 REMARK 3 B22 (A**2) : -0.04520 REMARK 3 B33 (A**2) : 0.09030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1741 REMARK 3 ANGLE : 1.661 2326 REMARK 3 CHIRALITY : 0.100 240 REMARK 3 PLANARITY : 0.008 297 REMARK 3 DIHEDRAL : 16.681 659 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:35) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6217 -33.4333 14.3816 REMARK 3 T TENSOR REMARK 3 T11: 0.8853 T22: -0.2801 REMARK 3 T33: 0.2497 T12: 0.1396 REMARK 3 T13: 0.1188 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.0790 L22: 1.7680 REMARK 3 L33: 2.5539 L12: 1.2794 REMARK 3 L13: 0.2794 L23: -0.4434 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.3199 S13: -0.8060 REMARK 3 S21: 0.0192 S22: -0.2457 S23: -0.0987 REMARK 3 S31: 2.1447 S32: -0.0978 S33: 0.0485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 36:52) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6276 -28.4205 26.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.4458 T22: 0.2629 REMARK 3 T33: 0.2642 T12: 0.0253 REMARK 3 T13: 0.0604 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 4.0277 L22: 6.1315 REMARK 3 L33: 6.1365 L12: 4.6121 REMARK 3 L13: 1.6344 L23: -0.2641 REMARK 3 S TENSOR REMARK 3 S11: 0.2181 S12: -0.2316 S13: -0.0744 REMARK 3 S21: -0.3884 S22: -0.2294 S23: 0.0135 REMARK 3 S31: 0.6701 S32: -0.3642 S33: -0.0494 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 53:106) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3970 -21.6832 14.5609 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.3722 REMARK 3 T33: 0.1757 T12: 0.2300 REMARK 3 T13: 0.0006 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.8527 L22: 2.7345 REMARK 3 L33: 2.8428 L12: 0.2136 REMARK 3 L13: -1.0573 L23: -0.2151 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.1714 S13: -0.0547 REMARK 3 S21: -0.0564 S22: -0.2517 S23: -0.0700 REMARK 3 S31: 0.8483 S32: 0.7984 S33: 0.1127 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 107:124) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6055 -4.9692 10.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.5238 REMARK 3 T33: 0.6531 T12: 0.1107 REMARK 3 T13: -0.0778 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 6.2500 L22: 1.8361 REMARK 3 L33: 4.2050 L12: 0.5053 REMARK 3 L13: -2.6676 L23: -0.0908 REMARK 3 S TENSOR REMARK 3 S11: 0.3496 S12: 0.1171 S13: 0.6400 REMARK 3 S21: -0.3121 S22: -0.1039 S23: 1.3218 REMARK 3 S31: -0.5478 S32: -1.2108 S33: -0.2643 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 125:139) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8500 -8.3305 0.6591 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.2531 REMARK 3 T33: 0.2672 T12: 0.0070 REMARK 3 T13: -0.0570 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 6.7733 L22: 5.1843 REMARK 3 L33: 7.5363 L12: -2.2362 REMARK 3 L13: -4.1384 L23: 2.1185 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: -0.1865 S13: -0.0380 REMARK 3 S21: -0.6373 S22: -0.0967 S23: 0.3089 REMARK 3 S31: -0.5088 S32: 0.1915 S33: -0.0534 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 140:176) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3630 -18.6015 2.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.2299 REMARK 3 T33: 0.2361 T12: 0.0510 REMARK 3 T13: -0.0211 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.1265 L22: 3.4499 REMARK 3 L33: 6.3741 L12: 2.1607 REMARK 3 L13: -2.0989 L23: -0.7207 REMARK 3 S TENSOR REMARK 3 S11: -0.2046 S12: 0.3305 S13: 0.2363 REMARK 3 S21: -0.4546 S22: 0.1295 S23: 0.2724 REMARK 3 S31: 0.6854 S32: -0.1471 S33: 0.0078 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 177:187) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0231 -22.8841 -3.2765 REMARK 3 T TENSOR REMARK 3 T11: 0.6100 T22: 0.3213 REMARK 3 T33: 0.2701 T12: 0.0672 REMARK 3 T13: -0.0622 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 4.9824 L22: 5.8279 REMARK 3 L33: 5.8252 L12: -2.8238 REMARK 3 L13: 1.4476 L23: -5.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: 0.5469 S13: -0.6247 REMARK 3 S21: -1.8666 S22: 0.0309 S23: 0.8372 REMARK 3 S31: 1.8180 S32: 0.3691 S33: -0.1893 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 188:203) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9226 -33.8342 2.9376 REMARK 3 T TENSOR REMARK 3 T11: 1.0442 T22: 0.3274 REMARK 3 T33: 0.3322 T12: -0.0703 REMARK 3 T13: 0.1641 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 4.1624 L22: 8.4658 REMARK 3 L33: 3.2064 L12: -5.6348 REMARK 3 L13: -3.6378 L23: 4.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.8589 S12: 0.4384 S13: -0.9278 REMARK 3 S21: 0.0252 S22: 0.1145 S23: 0.6452 REMARK 3 S31: 1.2656 S32: -0.2897 S33: 0.8099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000095349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 30% (W/V) PEG 400, 20% REMARK 280 (V/V) 1,2-PROPANEDIOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.92867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.96433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.94650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.98217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 174.91083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 139.92867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.96433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.98217 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.94650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 174.91083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.98217 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 403 O HOH A 414 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 420 O HOH A 420 10555 2.09 REMARK 500 OH TYR A 69 OE2 GLU A 82 10555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 46.32 -82.23 REMARK 500 ALA A 12 -114.58 31.58 REMARK 500 GLN A 62 112.92 80.65 REMARK 500 LYS A 124 -47.25 -136.26 REMARK 500 LEU A 145 7.31 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 305 REMARK 610 PEG A 307 REMARK 610 PG4 A 310 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VPQ RELATED DB: PDB REMARK 900 RELATED ID: 3VPU RELATED DB: PDB DBREF 3VPT A 0 203 UNP Q5CCJ4 Q5CCJ4_BOMMO 1 204 SEQRES 1 A 204 MET PRO ASN VAL LYS PHE TYR TYR PHE PRO VAL LYS ALA SEQRES 2 A 204 LEU GLY GLU SER GLN ARG LEU LEU LEU ALA TYR GLY GLY SEQRES 3 A 204 GLN GLU PHE GLU ASP ASN ARG ILE SER SER GLU ASN TRP SEQRES 4 A 204 PRO GLU PHE LYS PRO LYS THR PRO PHE GLY GLN MET PRO SEQRES 5 A 204 VAL LEU GLU ILE ASP GLY LYS GLN TYR ALA GLN SER THR SEQRES 6 A 204 ALA ILE CYS ARG TYR LEU GLY ARG LYS TYR GLY LEU ALA SEQRES 7 A 204 GLY ALA ASN ASP GLU GLU ALA PHE GLU ILE ASP GLN ASN SEQRES 8 A 204 VAL GLU PHE LEU ASN ASP ILE ARG ALA SER ALA ALA SER SEQRES 9 A 204 VAL HIS TYR GLU LYS ASP GLU ALA VAL LYS ALA LYS LYS SEQRES 10 A 204 LYS ALA GLU LEU GLU GLU THR LYS TYR PRO PHE PHE PHE SEQRES 11 A 204 GLU LYS LEU ASN GLU ILE LEU THR LYS ASN ASN GLY HIS SEQRES 12 A 204 ILE ALA LEU GLY LYS LEU THR TRP GLY ASP PHE VAL TYR SEQRES 13 A 204 ALA GLY MET TYR ASP TYR LEU LYS ALA MET LEU GLN LYS SEQRES 14 A 204 PRO ASP LEU GLU GLN LYS TYR PRO ALA PHE ARG LYS PRO SEQRES 15 A 204 ILE GLU ALA VAL LEU ALA ILE PRO LYS VAL LYS ALA TYR SEQRES 16 A 204 VAL ASP ALA ALA PRO ARG THR GLU LEU HET PGO A 301 5 HET PGO A 302 5 HET PGO A 303 5 HET PGO A 304 5 HET PEG A 305 6 HET PEG A 306 7 HET PEG A 307 6 HET PGO A 308 5 HET PGO A 309 5 HET PG4 A 310 10 HET PEG A 311 7 HETNAM PGO S-1,2-PROPANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 PGO 6(C3 H8 O2) FORMUL 6 PEG 4(C4 H10 O3) FORMUL 11 PG4 C8 H18 O5 FORMUL 13 HOH *52(H2 O) HELIX 1 1 GLY A 14 GLY A 24 1 11 HELIX 2 2 ASN A 37 LYS A 42 1 6 HELIX 3 3 PRO A 43 THR A 45 5 3 HELIX 4 4 GLN A 62 TYR A 74 1 13 HELIX 5 5 ASN A 80 TYR A 106 1 27 HELIX 6 6 ASP A 109 LYS A 124 1 16 HELIX 7 7 LYS A 124 ASN A 139 1 16 HELIX 8 8 THR A 149 GLN A 167 1 19 HELIX 9 9 ASP A 170 TYR A 175 1 6 HELIX 10 10 PRO A 176 PHE A 178 5 3 HELIX 11 11 ARG A 179 ALA A 187 1 9 HELIX 12 12 ILE A 188 ALA A 198 1 11 SHEET 1 A 4 GLU A 29 ARG A 32 0 SHEET 2 A 4 VAL A 3 TYR A 7 1 N PHE A 5 O GLU A 29 SHEET 3 A 4 VAL A 52 ILE A 55 -1 O GLU A 54 N LYS A 4 SHEET 4 A 4 LYS A 58 ALA A 61 -1 O TYR A 60 N LEU A 53 CISPEP 1 MET A 50 PRO A 51 0 10.30 SITE 1 AC1 6 PRO A 43 THR A 45 PRO A 46 PHE A 47 SITE 2 AC1 6 GLY A 48 LYS A 131 SITE 1 AC2 2 LYS A 11 ALA A 156 SITE 1 AC3 4 TYR A 6 LYS A 44 GLU A 54 GLN A 59 SITE 1 AC4 2 ARG A 72 ASP A 81 SITE 1 AC5 5 GLU A 122 THR A 123 GLU A 130 LYS A 174 SITE 2 AC5 5 TYR A 175 SITE 1 AC6 1 LYS A 180 SITE 1 AC7 6 GLU A 86 ASN A 90 GLU A 134 LYS A 138 SITE 2 AC7 6 ASN A 139 ARG A 200 SITE 1 AC8 6 GLY A 75 LEU A 76 ALA A 77 GLY A 78 SITE 2 AC8 6 LEU A 148 GLU A 172 SITE 1 AC9 5 THR A 64 ASN A 95 ARG A 98 HOH A 436 SITE 2 AC9 5 HOH A 449 SITE 1 BC1 3 GLN A 49 SER A 100 LYS A 124 SITE 1 BC2 3 PRO A 9 VAL A 10 ASN A 140 CRYST1 56.128 56.128 209.893 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017816 0.010286 0.000000 0.00000 SCALE2 0.000000 0.020573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004764 0.00000