HEADER IMMUNE SYSTEM 17-MAR-12 3VQ2
TITLE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LPS COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 22-627;
COMPND 5 SYNONYM: TLR4;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: LYMPHOCYTE ANTIGEN 96;
COMPND 9 CHAIN: C, D;
COMPND 10 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: TLR4;
SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215;
SOURCE 8 EXPRESSION_SYSTEM_CELL: S2;
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 11 ORGANISM_COMMON: MOUSE;
SOURCE 12 ORGANISM_TAXID: 10090;
SOURCE 13 GENE: MD2;
SOURCE 14 EXPRESSION_SYSTEM: DROSOPHILA;
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7215;
SOURCE 16 EXPRESSION_SYSTEM_CELL: S2
KEYWDS LEUCINE RICH REPEAT MD-2 RELATED LIPID RECOGNITION, RECEPTOR INNATE
KEYWDS 2 IMMUNITY, LIPID BINDING, GLYCOSYLATION, SECRETED, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR U.OHTO,T.SHIMIZU
REVDAT 6 30-OCT-24 3VQ2 1 REMARK
REVDAT 5 08-NOV-23 3VQ2 1 HETSYN
REVDAT 4 29-JUL-20 3VQ2 1 COMPND REMARK HETNAM LINK
REVDAT 4 2 1 SITE ATOM
REVDAT 3 22-NOV-17 3VQ2 1 REMARK
REVDAT 2 17-JUL-13 3VQ2 1 JRNL
REVDAT 1 09-MAY-12 3VQ2 0
JRNL AUTH U.OHTO,K.FUKASE,K.MIYAKE,T.SHIMIZU
JRNL TITL STRUCTURAL BASIS OF SPECIES-SPECIFIC ENDOTOXIN SENSING BY
JRNL TITL 2 INNATE IMMUNE RECEPTOR TLR4/MD-2
JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 7421 2012
JRNL REFN ISSN 0027-8424
JRNL PMID 22532668
JRNL DOI 10.1073/PNAS.1201193109
REMARK 2
REMARK 2 RESOLUTION. 2.48 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.59
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4
REMARK 3 NUMBER OF REFLECTIONS : 70034
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.223
REMARK 3 R VALUE (WORKING SET) : 0.221
REMARK 3 FREE R VALUE : 0.267
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 3710
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54
REMARK 3 REFLECTION IN BIN (WORKING SET) : 4043
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.69
REMARK 3 BIN R VALUE (WORKING SET) : 0.2910
REMARK 3 BIN FREE R VALUE SET COUNT : 238
REMARK 3 BIN FREE R VALUE : 0.3560
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 11458
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 340
REMARK 3 SOLVENT ATOMS : 17
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.74
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.50000
REMARK 3 B22 (A**2) : 0.70000
REMARK 3 B33 (A**2) : -0.14000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.33000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.404
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.895
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12102 ; 0.008 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16349 ; 1.486 ; 1.978
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1432 ; 6.022 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 544 ;36.092 ;24.926
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2064 ;19.104 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;22.884 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1878 ; 0.091 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8843 ; 0.004 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 27 A 607
REMARK 3 ORIGIN FOR THE GROUP (A): -45.8966 2.5546 22.2559
REMARK 3 T TENSOR
REMARK 3 T11: 0.1560 T22: 0.1575
REMARK 3 T33: 0.2012 T12: 0.0556
REMARK 3 T13: -0.0174 T23: -0.0017
REMARK 3 L TENSOR
REMARK 3 L11: 1.3866 L22: 0.4744
REMARK 3 L33: 0.2792 L12: 0.4439
REMARK 3 L13: -0.1168 L23: 0.0060
REMARK 3 S TENSOR
REMARK 3 S11: -0.0717 S12: -0.1203 S13: -0.0136
REMARK 3 S21: -0.1648 S22: 0.0620 S23: 0.0001
REMARK 3 S31: -0.1523 S32: -0.1526 S33: 0.0097
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 21 C 155
REMARK 3 ORIGIN FOR THE GROUP (A): -32.1931 -17.2003 31.5200
REMARK 3 T TENSOR
REMARK 3 T11: 0.0048 T22: 0.2517
REMARK 3 T33: 0.2720 T12: 0.0031
REMARK 3 T13: 0.0241 T23: 0.1561
REMARK 3 L TENSOR
REMARK 3 L11: 3.0316 L22: 1.7523
REMARK 3 L33: 1.4600 L12: -0.1934
REMARK 3 L13: 0.0847 L23: 0.6568
REMARK 3 S TENSOR
REMARK 3 S11: -0.0394 S12: -0.5269 S13: -0.3868
REMARK 3 S21: -0.0110 S22: 0.0414 S23: -0.0956
REMARK 3 S31: 0.0373 S32: 0.0607 S33: -0.0020
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 27 B 607
REMARK 3 ORIGIN FOR THE GROUP (A): 5.0840 9.5495 5.3764
REMARK 3 T TENSOR
REMARK 3 T11: 0.2942 T22: 0.2636
REMARK 3 T33: 0.1508 T12: -0.0229
REMARK 3 T13: -0.0173 T23: -0.0933
REMARK 3 L TENSOR
REMARK 3 L11: 0.2302 L22: 0.1767
REMARK 3 L33: 1.3713 L12: 0.0160
REMARK 3 L13: -0.0433 L23: -0.3174
REMARK 3 S TENSOR
REMARK 3 S11: -0.0084 S12: -0.0175 S13: -0.1039
REMARK 3 S21: -0.0521 S22: -0.0086 S23: 0.0487
REMARK 3 S31: -0.1689 S32: 0.2223 S33: 0.0170
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 21 D 155
REMARK 3 ORIGIN FOR THE GROUP (A): -8.0469 29.7780 -2.2509
REMARK 3 T TENSOR
REMARK 3 T11: 0.4551 T22: 0.1009
REMARK 3 T33: 0.2795 T12: -0.1453
REMARK 3 T13: 0.0720 T23: -0.0594
REMARK 3 L TENSOR
REMARK 3 L11: 2.6305 L22: 1.9590
REMARK 3 L33: 3.2691 L12: -0.6174
REMARK 3 L13: -1.2830 L23: 1.4498
REMARK 3 S TENSOR
REMARK 3 S11: 0.2154 S12: -0.1234 S13: 0.1935
REMARK 3 S21: -0.1454 S22: 0.1660 S23: 0.1694
REMARK 3 S31: -0.3074 S32: 0.4804 S33: -0.3814
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 3VQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-12.
REMARK 100 THE DEPOSITION ID IS D_1000095358.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL32XU
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70034
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480
REMARK 200 RESOLUTION RANGE LOW (A) : 86.600
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : 4.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.08800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 2Z64
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.84
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M SODIUM TARTRATE,
REMARK 280 0.1M BIS-TRIS PROPANE, PH 7.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.16000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 18300 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 58430 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO A 22
REMARK 465 GLY A 23
REMARK 465 SER A 24
REMARK 465 LEU A 25
REMARK 465 ASN A 26
REMARK 465 THR A 608
REMARK 465 PRO A 609
REMARK 465 VAL A 610
REMARK 465 GLU A 611
REMARK 465 MET A 612
REMARK 465 ASN A 613
REMARK 465 THR A 614
REMARK 465 SER A 615
REMARK 465 LEU A 616
REMARK 465 VAL A 617
REMARK 465 LEU A 618
REMARK 465 ASP A 619
REMARK 465 PHE A 620
REMARK 465 ASN A 621
REMARK 465 ASN A 622
REMARK 465 SER A 623
REMARK 465 THR A 624
REMARK 465 CYS A 625
REMARK 465 TYR A 626
REMARK 465 MET A 627
REMARK 465 GLU C 17
REMARK 465 SER C 18
REMARK 465 GLU C 19
REMARK 465 LYS C 20
REMARK 465 ARG C 156
REMARK 465 ARG C 157
REMARK 465 ASP C 158
REMARK 465 VAL C 159
REMARK 465 ASN C 160
REMARK 465 PRO B 22
REMARK 465 GLY B 23
REMARK 465 SER B 24
REMARK 465 LEU B 25
REMARK 465 ASN B 26
REMARK 465 THR B 608
REMARK 465 PRO B 609
REMARK 465 VAL B 610
REMARK 465 GLU B 611
REMARK 465 MET B 612
REMARK 465 ASN B 613
REMARK 465 THR B 614
REMARK 465 SER B 615
REMARK 465 LEU B 616
REMARK 465 VAL B 617
REMARK 465 LEU B 618
REMARK 465 ASP B 619
REMARK 465 PHE B 620
REMARK 465 ASN B 621
REMARK 465 ASN B 622
REMARK 465 SER B 623
REMARK 465 THR B 624
REMARK 465 CYS B 625
REMARK 465 TYR B 626
REMARK 465 MET B 627
REMARK 465 GLU D 17
REMARK 465 SER D 18
REMARK 465 GLU D 19
REMARK 465 LYS D 20
REMARK 465 ARG D 156
REMARK 465 ARG D 157
REMARK 465 ASP D 158
REMARK 465 VAL D 159
REMARK 465 ASN D 160
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 ND2 ASN A 524 O5 NAG E 1 1.47
REMARK 500 ND2 ASN A 172 O5 NAG A 800 1.49
REMARK 500 CG ASN A 524 C1 NAG E 1 1.61
REMARK 500 CG ASN A 204 C1 NAG A 801 1.66
REMARK 500 OD1 ASN A 524 C1 NAG E 1 1.68
REMARK 500 OD1 ASN A 204 C1 NAG A 801 1.70
REMARK 500 ND2 ASN A 524 C2 NAG E 1 1.94
REMARK 500 O5 LP4 D 300 O6 LP5 D 301 1.95
REMARK 500 O43 LP4 C 300 O2 MYR C 303 2.01
REMARK 500 O44 LP4 D 300 O2 DAO D 302 2.03
REMARK 500 O5 LP4 C 300 O6 LP5 C 301 2.04
REMARK 500 O44 LP4 C 300 C2 DAO C 302 2.07
REMARK 500 ND2 ASN A 204 C2 NAG A 801 2.08
REMARK 500 O44 LP4 D 300 C2 DAO D 302 2.12
REMARK 500 O43 LP4 D 300 O2 MYR D 303 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO B 52 C - N - CA ANGL. DEV. = 9.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 35 -57.02 -122.31
REMARK 500 GLN A 42 -136.88 -92.35
REMARK 500 LYS A 43 37.24 -140.27
REMARK 500 LYS A 66 -42.25 58.35
REMARK 500 THR A 109 127.79 -35.97
REMARK 500 ASN A 159 -149.11 -123.25
REMARK 500 TYR A 169 -9.53 -58.66
REMARK 500 ASP A 264 32.58 -97.80
REMARK 500 ARG A 266 116.93 -29.53
REMARK 500 THR A 290 -166.71 -106.55
REMARK 500 ASP A 294 58.03 -113.28
REMARK 500 SER A 317 29.21 -69.32
REMARK 500 ASP A 323 -37.59 -134.85
REMARK 500 ASP A 347 52.95 -151.45
REMARK 500 LEU A 351 108.10 -58.65
REMARK 500 ASN A 407 -167.75 -119.06
REMARK 500 ASN A 415 51.65 -97.68
REMARK 500 GLN A 428 134.86 -36.80
REMARK 500 PHE A 438 -173.84 -172.56
REMARK 500 LEU A 444 53.61 -94.17
REMARK 500 LEU A 468 53.41 -90.17
REMARK 500 ASN A 479 -157.18 -111.40
REMARK 500 ASP A 483 18.18 56.77
REMARK 500 ASN A 484 29.94 49.17
REMARK 500 ASN A 528 -162.05 -115.39
REMARK 500 GLN A 540 -20.47 92.62
REMARK 500 ASN A 552 -166.42 -101.78
REMARK 500 ILE A 560 104.55 70.91
REMARK 500 SER A 577 67.24 -117.97
REMARK 500 ILE A 581 -117.28 -142.61
REMARK 500 CYS A 582 -8.28 -155.56
REMARK 500 LYS A 592 -72.97 -63.64
REMARK 500 GLN A 594 74.54 -100.03
REMARK 500 ASP C 99 50.25 36.23
REMARK 500 LYS C 128 -71.38 176.19
REMARK 500 GLU C 143 16.77 59.80
REMARK 500 PRO B 33 104.50 -56.82
REMARK 500 ILE B 35 -50.20 -130.61
REMARK 500 ASP B 41 26.20 48.47
REMARK 500 PRO B 48 106.45 -56.97
REMARK 500 PRO B 52 131.31 -23.66
REMARK 500 SER B 53 66.56 -101.50
REMARK 500 SER B 54 -10.59 -141.85
REMARK 500 LYS B 66 -62.15 71.85
REMARK 500 ARG B 86 61.75 39.77
REMARK 500 GLU B 88 14.21 56.77
REMARK 500 HIS B 98 -74.75 -63.77
REMARK 500 GLN B 114 -67.40 59.87
REMARK 500 PRO B 118 137.02 -39.01
REMARK 500 ASN B 159 -159.24 -131.14
REMARK 500
REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ASP A 323 VAL A 324 -148.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 NAG A 804
REMARK 610 LP4 C 300
REMARK 610 LP4 D 300
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3VQ1 RELATED DB: PDB
DBREF 3VQ2 A 22 627 UNP Q9QUK6 TLR4_MOUSE 22 627
DBREF 3VQ2 C 17 160 UNP Q9JHF9 LY96_MOUSE 17 160
DBREF 3VQ2 B 22 627 UNP Q9QUK6 TLR4_MOUSE 22 627
DBREF 3VQ2 D 17 160 UNP Q9JHF9 LY96_MOUSE 17 160
SEQRES 1 A 606 PRO GLY SER LEU ASN PRO CYS ILE GLU VAL VAL PRO ASN
SEQRES 2 A 606 ILE THR TYR GLN CYS MET ASP GLN LYS LEU SER LYS VAL
SEQRES 3 A 606 PRO ASP ASP ILE PRO SER SER THR LYS ASN ILE ASP LEU
SEQRES 4 A 606 SER PHE ASN PRO LEU LYS ILE LEU LYS SER TYR SER PHE
SEQRES 5 A 606 SER ASN PHE SER GLU LEU GLN TRP LEU ASP LEU SER ARG
SEQRES 6 A 606 CYS GLU ILE GLU THR ILE GLU ASP LYS ALA TRP HIS GLY
SEQRES 7 A 606 LEU HIS HIS LEU SER ASN LEU ILE LEU THR GLY ASN PRO
SEQRES 8 A 606 ILE GLN SER PHE SER PRO GLY SER PHE SER GLY LEU THR
SEQRES 9 A 606 SER LEU GLU ASN LEU VAL ALA VAL GLU THR LYS LEU ALA
SEQRES 10 A 606 SER LEU GLU SER PHE PRO ILE GLY GLN LEU ILE THR LEU
SEQRES 11 A 606 LYS LYS LEU ASN VAL ALA HIS ASN PHE ILE HIS SER CYS
SEQRES 12 A 606 LYS LEU PRO ALA TYR PHE SER ASN LEU THR ASN LEU VAL
SEQRES 13 A 606 HIS VAL ASP LEU SER TYR ASN TYR ILE GLN THR ILE THR
SEQRES 14 A 606 VAL ASN ASP LEU GLN PHE LEU ARG GLU ASN PRO GLN VAL
SEQRES 15 A 606 ASN LEU SER LEU ASP MET SER LEU ASN PRO ILE ASP PHE
SEQRES 16 A 606 ILE GLN ASP GLN ALA PHE GLN GLY ILE LYS LEU HIS GLU
SEQRES 17 A 606 LEU THR LEU ARG GLY ASN PHE ASN SER SER ASN ILE MET
SEQRES 18 A 606 LYS THR CYS LEU GLN ASN LEU ALA GLY LEU HIS VAL HIS
SEQRES 19 A 606 ARG LEU ILE LEU GLY GLU PHE LYS ASP GLU ARG ASN LEU
SEQRES 20 A 606 GLU ILE PHE GLU PRO SER ILE MET GLU GLY LEU CYS ASP
SEQRES 21 A 606 VAL THR ILE ASP GLU PHE ARG LEU THR TYR THR ASN ASP
SEQRES 22 A 606 PHE SER ASP ASP ILE VAL LYS PHE HIS CYS LEU ALA ASN
SEQRES 23 A 606 VAL SER ALA MET SER LEU ALA GLY VAL SER ILE LYS TYR
SEQRES 24 A 606 LEU GLU ASP VAL PRO LYS HIS PHE LYS TRP GLN SER LEU
SEQRES 25 A 606 SER ILE ILE ARG CYS GLN LEU LYS GLN PHE PRO THR LEU
SEQRES 26 A 606 ASP LEU PRO PHE LEU LYS SER LEU THR LEU THR MET ASN
SEQRES 27 A 606 LYS GLY SER ILE SER PHE LYS LYS VAL ALA LEU PRO SER
SEQRES 28 A 606 LEU SER TYR LEU ASP LEU SER ARG ASN ALA LEU SER PHE
SEQRES 29 A 606 SER GLY CYS CYS SER TYR SER ASP LEU GLY THR ASN SER
SEQRES 30 A 606 LEU ARG HIS LEU ASP LEU SER PHE ASN GLY ALA ILE ILE
SEQRES 31 A 606 MET SER ALA ASN PHE MET GLY LEU GLU GLU LEU GLN HIS
SEQRES 32 A 606 LEU ASP PHE GLN HIS SER THR LEU LYS ARG VAL THR GLU
SEQRES 33 A 606 PHE SER ALA PHE LEU SER LEU GLU LYS LEU LEU TYR LEU
SEQRES 34 A 606 ASP ILE SER TYR THR ASN THR LYS ILE ASP PHE ASP GLY
SEQRES 35 A 606 ILE PHE LEU GLY LEU THR SER LEU ASN THR LEU LYS MET
SEQRES 36 A 606 ALA GLY ASN SER PHE LYS ASP ASN THR LEU SER ASN VAL
SEQRES 37 A 606 PHE ALA ASN THR THR ASN LEU THR PHE LEU ASP LEU SER
SEQRES 38 A 606 LYS CYS GLN LEU GLU GLN ILE SER TRP GLY VAL PHE ASP
SEQRES 39 A 606 THR LEU HIS ARG LEU GLN LEU LEU ASN MET SER HIS ASN
SEQRES 40 A 606 ASN LEU LEU PHE LEU ASP SER SER HIS TYR ASN GLN LEU
SEQRES 41 A 606 TYR SER LEU SER THR LEU ASP CYS SER PHE ASN ARG ILE
SEQRES 42 A 606 GLU THR SER LYS GLY ILE LEU GLN HIS PHE PRO LYS SER
SEQRES 43 A 606 LEU ALA PHE PHE ASN LEU THR ASN ASN SER VAL ALA CYS
SEQRES 44 A 606 ILE CYS GLU HIS GLN LYS PHE LEU GLN TRP VAL LYS GLU
SEQRES 45 A 606 GLN LYS GLN PHE LEU VAL ASN VAL GLU GLN MET THR CYS
SEQRES 46 A 606 ALA THR PRO VAL GLU MET ASN THR SER LEU VAL LEU ASP
SEQRES 47 A 606 PHE ASN ASN SER THR CYS TYR MET
SEQRES 1 C 144 GLU SER GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP
SEQRES 2 C 144 ALA ILE ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE
SEQRES 3 C 144 PRO ILE SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG
SEQRES 4 C 144 GLY THR ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG
SEQRES 5 C 144 GLY ASN LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER
SEQRES 6 C 144 VAL ASN SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU
SEQRES 7 C 144 CYS HIS GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA
SEQRES 8 C 144 LEU LYS GLY GLU THR VAL ASN THR SER ILE PRO PHE SER
SEQRES 9 C 144 PHE GLU GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS
SEQRES 10 C 144 VAL ALA GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU
SEQRES 11 C 144 PHE CYS LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL
SEQRES 12 C 144 ASN
SEQRES 1 B 606 PRO GLY SER LEU ASN PRO CYS ILE GLU VAL VAL PRO ASN
SEQRES 2 B 606 ILE THR TYR GLN CYS MET ASP GLN LYS LEU SER LYS VAL
SEQRES 3 B 606 PRO ASP ASP ILE PRO SER SER THR LYS ASN ILE ASP LEU
SEQRES 4 B 606 SER PHE ASN PRO LEU LYS ILE LEU LYS SER TYR SER PHE
SEQRES 5 B 606 SER ASN PHE SER GLU LEU GLN TRP LEU ASP LEU SER ARG
SEQRES 6 B 606 CYS GLU ILE GLU THR ILE GLU ASP LYS ALA TRP HIS GLY
SEQRES 7 B 606 LEU HIS HIS LEU SER ASN LEU ILE LEU THR GLY ASN PRO
SEQRES 8 B 606 ILE GLN SER PHE SER PRO GLY SER PHE SER GLY LEU THR
SEQRES 9 B 606 SER LEU GLU ASN LEU VAL ALA VAL GLU THR LYS LEU ALA
SEQRES 10 B 606 SER LEU GLU SER PHE PRO ILE GLY GLN LEU ILE THR LEU
SEQRES 11 B 606 LYS LYS LEU ASN VAL ALA HIS ASN PHE ILE HIS SER CYS
SEQRES 12 B 606 LYS LEU PRO ALA TYR PHE SER ASN LEU THR ASN LEU VAL
SEQRES 13 B 606 HIS VAL ASP LEU SER TYR ASN TYR ILE GLN THR ILE THR
SEQRES 14 B 606 VAL ASN ASP LEU GLN PHE LEU ARG GLU ASN PRO GLN VAL
SEQRES 15 B 606 ASN LEU SER LEU ASP MET SER LEU ASN PRO ILE ASP PHE
SEQRES 16 B 606 ILE GLN ASP GLN ALA PHE GLN GLY ILE LYS LEU HIS GLU
SEQRES 17 B 606 LEU THR LEU ARG GLY ASN PHE ASN SER SER ASN ILE MET
SEQRES 18 B 606 LYS THR CYS LEU GLN ASN LEU ALA GLY LEU HIS VAL HIS
SEQRES 19 B 606 ARG LEU ILE LEU GLY GLU PHE LYS ASP GLU ARG ASN LEU
SEQRES 20 B 606 GLU ILE PHE GLU PRO SER ILE MET GLU GLY LEU CYS ASP
SEQRES 21 B 606 VAL THR ILE ASP GLU PHE ARG LEU THR TYR THR ASN ASP
SEQRES 22 B 606 PHE SER ASP ASP ILE VAL LYS PHE HIS CYS LEU ALA ASN
SEQRES 23 B 606 VAL SER ALA MET SER LEU ALA GLY VAL SER ILE LYS TYR
SEQRES 24 B 606 LEU GLU ASP VAL PRO LYS HIS PHE LYS TRP GLN SER LEU
SEQRES 25 B 606 SER ILE ILE ARG CYS GLN LEU LYS GLN PHE PRO THR LEU
SEQRES 26 B 606 ASP LEU PRO PHE LEU LYS SER LEU THR LEU THR MET ASN
SEQRES 27 B 606 LYS GLY SER ILE SER PHE LYS LYS VAL ALA LEU PRO SER
SEQRES 28 B 606 LEU SER TYR LEU ASP LEU SER ARG ASN ALA LEU SER PHE
SEQRES 29 B 606 SER GLY CYS CYS SER TYR SER ASP LEU GLY THR ASN SER
SEQRES 30 B 606 LEU ARG HIS LEU ASP LEU SER PHE ASN GLY ALA ILE ILE
SEQRES 31 B 606 MET SER ALA ASN PHE MET GLY LEU GLU GLU LEU GLN HIS
SEQRES 32 B 606 LEU ASP PHE GLN HIS SER THR LEU LYS ARG VAL THR GLU
SEQRES 33 B 606 PHE SER ALA PHE LEU SER LEU GLU LYS LEU LEU TYR LEU
SEQRES 34 B 606 ASP ILE SER TYR THR ASN THR LYS ILE ASP PHE ASP GLY
SEQRES 35 B 606 ILE PHE LEU GLY LEU THR SER LEU ASN THR LEU LYS MET
SEQRES 36 B 606 ALA GLY ASN SER PHE LYS ASP ASN THR LEU SER ASN VAL
SEQRES 37 B 606 PHE ALA ASN THR THR ASN LEU THR PHE LEU ASP LEU SER
SEQRES 38 B 606 LYS CYS GLN LEU GLU GLN ILE SER TRP GLY VAL PHE ASP
SEQRES 39 B 606 THR LEU HIS ARG LEU GLN LEU LEU ASN MET SER HIS ASN
SEQRES 40 B 606 ASN LEU LEU PHE LEU ASP SER SER HIS TYR ASN GLN LEU
SEQRES 41 B 606 TYR SER LEU SER THR LEU ASP CYS SER PHE ASN ARG ILE
SEQRES 42 B 606 GLU THR SER LYS GLY ILE LEU GLN HIS PHE PRO LYS SER
SEQRES 43 B 606 LEU ALA PHE PHE ASN LEU THR ASN ASN SER VAL ALA CYS
SEQRES 44 B 606 ILE CYS GLU HIS GLN LYS PHE LEU GLN TRP VAL LYS GLU
SEQRES 45 B 606 GLN LYS GLN PHE LEU VAL ASN VAL GLU GLN MET THR CYS
SEQRES 46 B 606 ALA THR PRO VAL GLU MET ASN THR SER LEU VAL LEU ASP
SEQRES 47 B 606 PHE ASN ASN SER THR CYS TYR MET
SEQRES 1 D 144 GLU SER GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP
SEQRES 2 D 144 ALA ILE ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE
SEQRES 3 D 144 PRO ILE SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG
SEQRES 4 D 144 GLY THR ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG
SEQRES 5 D 144 GLY ASN LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER
SEQRES 6 D 144 VAL ASN SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU
SEQRES 7 D 144 CYS HIS GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA
SEQRES 8 D 144 LEU LYS GLY GLU THR VAL ASN THR SER ILE PRO PHE SER
SEQRES 9 D 144 PHE GLU GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS
SEQRES 10 D 144 VAL ALA GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU
SEQRES 11 D 144 PHE CYS LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL
SEQRES 12 D 144 ASN
MODRES 3VQ2 ASN A 172 ASN GLYCOSYLATION SITE
MODRES 3VQ2 ASN A 204 ASN GLYCOSYLATION SITE
MODRES 3VQ2 ASN A 524 ASN GLYCOSYLATION SITE
MODRES 3VQ2 ASN B 524 ASN GLYCOSYLATION SITE
HET NAG E 1 14
HET NAG E 2 14
HET NAG F 1 14
HET NAG F 2 14
HET NAG A 800 14
HET NAG A 801 14
HET NAG A 804 14
HET LP4 C 300 45
HET LP5 C 301 48
HET DAO C 302 13
HET MYR C 303 15
HET LP4 D 300 45
HET LP5 D 301 48
HET DAO D 302 13
HET MYR D 303 15
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3-
HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D-
HETNAM 3 LP4 GLUCOPYRANOSE
HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-
HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)
HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
HETNAM DAO LAURIC ACID
HETNAM MYR MYRISTIC ACID
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 5 NAG 7(C8 H15 N O6)
FORMUL 10 LP4 2(C34 H66 N O12 P)
FORMUL 11 LP5 2(C34 H66 N O12 P)
FORMUL 12 DAO 2(C12 H24 O2)
FORMUL 13 MYR 2(C14 H28 O2)
FORMUL 18 HOH *17(H2 O)
HELIX 1 1 PRO A 167 ASN A 172 5 6
HELIX 2 2 LEU A 194 ASN A 200 1 7
HELIX 3 3 SER A 238 ASN A 248 1 11
HELIX 4 4 GLU A 272 GLU A 277 5 6
HELIX 5 5 GLY A 278 VAL A 282 5 5
HELIX 6 6 SER A 296 LYS A 301 5 6
HELIX 7 7 PHE A 302 ALA A 306 5 5
HELIX 8 8 SER A 390 GLY A 395 1 6
HELIX 9 9 SER A 536 TYR A 538 5 3
HELIX 10 10 ILE A 560 PHE A 564 5 5
HELIX 11 11 HIS A 584 GLN A 589 1 6
HELIX 12 12 ASN A 600 MET A 604 5 5
HELIX 13 13 TYR C 102 ALA C 107 5 6
HELIX 14 14 PRO B 167 ASN B 172 5 6
HELIX 15 15 VAL B 191 ASP B 193 5 3
HELIX 16 16 LEU B 194 ASN B 200 1 7
HELIX 17 17 SER B 238 ASN B 248 1 11
HELIX 18 18 GLU B 272 VAL B 282 5 11
HELIX 19 19 SER B 296 VAL B 300 5 5
HELIX 20 20 PHE B 302 ALA B 306 5 5
HELIX 21 21 SER B 390 GLY B 395 1 6
HELIX 22 22 SER B 536 TYR B 538 5 3
HELIX 23 23 ILE B 560 PHE B 564 5 5
HELIX 24 24 HIS B 584 GLN B 594 1 11
HELIX 25 25 ASN B 600 MET B 604 5 5
HELIX 26 26 TYR D 102 ALA D 107 5 6
SHEET 1 A24 ILE A 29 VAL A 32 0
SHEET 2 A24 THR A 36 GLN A 38 -1 O GLN A 38 N ILE A 29
SHEET 3 A24 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37
SHEET 4 A24 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58
SHEET 5 A24 ASN A 105 ILE A 107 1 O ILE A 107 N LEU A 82
SHEET 6 A24 ASN A 129 VAL A 131 1 O VAL A 131 N LEU A 106
SHEET 7 A24 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130
SHEET 8 A24 HIS A 178 ASP A 180 1 O ASP A 180 N LEU A 154
SHEET 9 A24 SER A 206 ASP A 208 1 O SER A 206 N VAL A 179
SHEET 10 A24 LYS A 226 ARG A 233 1 O GLU A 229 N LEU A 207
SHEET 11 A24 HIS A 253 GLY A 260 1 O ILE A 258 N LEU A 232
SHEET 12 A24 THR A 283 LEU A 289 1 O ARG A 288 N LEU A 257
SHEET 13 A24 ALA A 310 ALA A 314 1 O ALA A 310 N PHE A 287
SHEET 14 A24 SER A 332 ILE A 336 1 O ILE A 336 N LEU A 313
SHEET 15 A24 SER A 353 THR A 357 1 O THR A 357 N ILE A 335
SHEET 16 A24 TYR A 375 ASP A 377 1 O TYR A 375 N LEU A 354
SHEET 17 A24 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376
SHEET 18 A24 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402
SHEET 19 A24 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425
SHEET 20 A24 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450
SHEET 21 A24 PHE A 498 ASP A 500 1 O ASP A 500 N LEU A 474
SHEET 22 A24 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499
SHEET 23 A24 THR A 546 ASP A 548 1 O ASP A 548 N LEU A 523
SHEET 24 A24 PHE A 570 ASN A 572 1 O ASN A 572 N LEU A 547
SHEET 1 B 2 ILE A 67 LEU A 68 0
SHEET 2 B 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68
SHEET 1 C 2 THR A 188 ILE A 189 0
SHEET 2 C 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189
SHEET 1 D 4 ILE A 363 SER A 364 0
SHEET 2 D 4 LEU A 383 CYS A 388 1 O SER A 384 N ILE A 363
SHEET 3 D 4 ALA A 409 MET A 412 1 O ILE A 411 N PHE A 385
SHEET 4 D 4 THR A 431 LYS A 433 1 O THR A 431 N ILE A 410
SHEET 1 E 2 LYS A 458 ILE A 459 0
SHEET 2 E 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459
SHEET 1 F 2 THR A 485 LEU A 486 0
SHEET 2 F 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486
SHEET 1 G 2 LEU A 533 ASP A 534 0
SHEET 2 G 2 SER A 557 LYS A 558 1 O LYS A 558 N LEU A 533
SHEET 1 H 6 TRP C 23 ASN C 26 0
SHEET 2 H 6 ILE C 31 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 H 6 LYS C 145 ILE C 154 -1 O ASN C 150 N SER C 35
SHEET 4 H 6 HIS C 130 ALA C 139 -1 N TYR C 131 O ILE C 153
SHEET 5 H 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 H 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82
SHEET 1 I 6 TRP C 23 ASN C 26 0
SHEET 2 I 6 ILE C 31 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 I 6 LYS C 145 ILE C 154 -1 O ASN C 150 N SER C 35
SHEET 4 I 6 HIS C 130 ALA C 139 -1 N TYR C 131 O ILE C 153
SHEET 5 I 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 I 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78
SHEET 1 J 3 ILE C 44 GLU C 49 0
SHEET 2 J 3 THR C 57 PHE C 65 -1 O HIS C 62 N SER C 47
SHEET 3 J 3 VAL C 113 PHE C 121 -1 O VAL C 113 N PHE C 65
SHEET 1 K24 ILE B 29 VAL B 32 0
SHEET 2 K24 THR B 36 GLN B 38 -1 O GLN B 38 N ILE B 29
SHEET 3 K24 ASN B 57 ASP B 59 1 O ASP B 59 N TYR B 37
SHEET 4 K24 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58
SHEET 5 K24 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82
SHEET 6 K24 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106
SHEET 7 K24 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130
SHEET 8 K24 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154
SHEET 9 K24 SER B 206 ASP B 208 1 O SER B 206 N VAL B 179
SHEET 10 K24 LYS B 226 ARG B 233 1 O GLU B 229 N LEU B 207
SHEET 11 K24 HIS B 253 GLY B 260 1 O ILE B 258 N LEU B 232
SHEET 12 K24 THR B 283 LEU B 289 1 O ARG B 288 N LEU B 257
SHEET 13 K24 ALA B 310 ALA B 314 1 O SER B 312 N LEU B 289
SHEET 14 K24 SER B 332 ILE B 336 1 O ILE B 336 N LEU B 313
SHEET 15 K24 SER B 353 THR B 357 1 O THR B 357 N ILE B 335
SHEET 16 K24 TYR B 375 ASP B 377 1 O ASP B 377 N LEU B 356
SHEET 17 K24 HIS B 401 ASP B 403 1 O ASP B 403 N LEU B 376
SHEET 18 K24 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402
SHEET 19 K24 TYR B 449 ASP B 451 1 O ASP B 451 N LEU B 425
SHEET 20 K24 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450
SHEET 21 K24 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474
SHEET 22 K24 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499
SHEET 23 K24 THR B 546 ASP B 548 1 O ASP B 548 N LEU B 523
SHEET 24 K24 PHE B 570 ASN B 572 1 O PHE B 570 N LEU B 547
SHEET 1 L 2 ILE B 67 LEU B 68 0
SHEET 2 L 2 THR B 91 ILE B 92 1 O THR B 91 N LEU B 68
SHEET 1 M 2 THR B 188 ILE B 189 0
SHEET 2 M 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189
SHEET 1 N 3 PHE B 385 CYS B 388 0
SHEET 2 N 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385
SHEET 3 N 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410
SHEET 1 O 2 LYS B 458 ILE B 459 0
SHEET 2 O 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459
SHEET 1 P 2 THR B 485 LEU B 486 0
SHEET 2 P 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486
SHEET 1 Q 2 LEU B 533 ASP B 534 0
SHEET 2 Q 2 SER B 557 LYS B 558 1 O LYS B 558 N LEU B 533
SHEET 1 R 6 TRP D 23 ASN D 26 0
SHEET 2 R 6 ILE D 31 TYR D 36 -1 O ILE D 32 N CYS D 25
SHEET 3 R 6 LYS D 145 HIS D 155 -1 O ASN D 150 N SER D 35
SHEET 4 R 6 GLY D 129 ALA D 139 -1 N ALA D 137 O PHE D 147
SHEET 5 R 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 R 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82
SHEET 1 S 6 TRP D 23 ASN D 26 0
SHEET 2 S 6 ILE D 31 TYR D 36 -1 O ILE D 32 N CYS D 25
SHEET 3 S 6 LYS D 145 HIS D 155 -1 O ASN D 150 N SER D 35
SHEET 4 S 6 GLY D 129 ALA D 139 -1 N ALA D 137 O PHE D 147
SHEET 5 S 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 S 6 ARG D 90 VAL D 93 -1 O GLU D 92 N PHE D 76
SHEET 1 T 3 SER D 45 GLU D 49 0
SHEET 2 T 3 THR D 57 PHE D 65 -1 O HIS D 62 N SER D 47
SHEET 3 T 3 VAL D 113 PHE D 121 -1 O ILE D 117 N VAL D 61
SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.04
SSBOND 2 CYS A 280 CYS A 304 1555 1555 2.04
SSBOND 3 CYS A 388 CYS A 389 1555 1555 2.02
SSBOND 4 CYS A 580 CYS A 606 1555 1555 2.04
SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.04
SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.05
SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.04
SSBOND 8 CYS B 28 CYS B 39 1555 1555 2.03
SSBOND 9 CYS B 280 CYS B 304 1555 1555 2.04
SSBOND 10 CYS B 388 CYS B 389 1555 1555 2.03
SSBOND 11 CYS B 580 CYS B 606 1555 1555 2.04
SSBOND 12 CYS D 25 CYS D 51 1555 1555 2.04
SSBOND 13 CYS D 37 CYS D 148 1555 1555 2.06
SSBOND 14 CYS D 95 CYS D 105 1555 1555 2.05
LINK ND2 ASN A 172 C1 NAG A 800 1555 1555 1.35
LINK ND2 ASN A 204 C1 NAG A 801 1555 1555 1.35
LINK ND2 ASN A 524 C1 NAG E 1 1555 1555 1.29
LINK C1 LP4 C 300 O6 LP5 C 301 1555 1555 1.45
LINK O44 LP4 C 300 C1 DAO C 302 1555 1555 1.46
LINK O43 LP4 C 300 C1 MYR C 303 1555 1555 1.46
LINK ND2 ASN B 524 C1 NAG F 1 1555 1555 1.44
LINK C1 LP4 D 300 O6 LP5 D 301 1555 1555 1.45
LINK O44 LP4 D 300 C1 DAO D 302 1555 1555 1.45
LINK O43 LP4 D 300 C1 MYR D 303 1555 1555 1.46
LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45
LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44
CISPEP 1 CYS A 388 CYS A 389 0 -9.54
CISPEP 2 GLU C 49 PRO C 50 0 -7.30
CISPEP 3 PRO C 127 LYS C 128 0 2.77
CISPEP 4 CYS B 388 CYS B 389 0 -6.06
CISPEP 5 GLU D 49 PRO D 50 0 -0.44
CRYST1 85.813 144.320 86.940 90.00 95.16 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011653 0.000000 0.001052 0.00000
SCALE2 0.000000 0.006929 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011549 0.00000