HEADER IMMUNE SYSTEM 17-MAR-12 3VQ2 TITLE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LPS COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-627; COMPND 5 SYNONYM: TLR4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LYMPHOCYTE ANTIGEN 96; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TLR4; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_CELL: S2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: MD2; SOURCE 14 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 16 EXPRESSION_SYSTEM_CELL: S2 KEYWDS LEUCINE RICH REPEAT MD-2 RELATED LIPID RECOGNITION, RECEPTOR INNATE KEYWDS 2 IMMUNITY, LIPID BINDING, GLYCOSYLATION, SECRETED, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR U.OHTO,T.SHIMIZU REVDAT 6 30-OCT-24 3VQ2 1 REMARK REVDAT 5 08-NOV-23 3VQ2 1 HETSYN REVDAT 4 29-JUL-20 3VQ2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-NOV-17 3VQ2 1 REMARK REVDAT 2 17-JUL-13 3VQ2 1 JRNL REVDAT 1 09-MAY-12 3VQ2 0 JRNL AUTH U.OHTO,K.FUKASE,K.MIYAKE,T.SHIMIZU JRNL TITL STRUCTURAL BASIS OF SPECIES-SPECIFIC ENDOTOXIN SENSING BY JRNL TITL 2 INNATE IMMUNE RECEPTOR TLR4/MD-2 JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 7421 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22532668 JRNL DOI 10.1073/PNAS.1201193109 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 70034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4043 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 238 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 340 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.404 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12102 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16349 ; 1.486 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1432 ; 6.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 544 ;36.092 ;24.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2064 ;19.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;22.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1878 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8843 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): -45.8966 2.5546 22.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1575 REMARK 3 T33: 0.2012 T12: 0.0556 REMARK 3 T13: -0.0174 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.3866 L22: 0.4744 REMARK 3 L33: 0.2792 L12: 0.4439 REMARK 3 L13: -0.1168 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: -0.1203 S13: -0.0136 REMARK 3 S21: -0.1648 S22: 0.0620 S23: 0.0001 REMARK 3 S31: -0.1523 S32: -0.1526 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 21 C 155 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1931 -17.2003 31.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.2517 REMARK 3 T33: 0.2720 T12: 0.0031 REMARK 3 T13: 0.0241 T23: 0.1561 REMARK 3 L TENSOR REMARK 3 L11: 3.0316 L22: 1.7523 REMARK 3 L33: 1.4600 L12: -0.1934 REMARK 3 L13: 0.0847 L23: 0.6568 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.5269 S13: -0.3868 REMARK 3 S21: -0.0110 S22: 0.0414 S23: -0.0956 REMARK 3 S31: 0.0373 S32: 0.0607 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 607 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0840 9.5495 5.3764 REMARK 3 T TENSOR REMARK 3 T11: 0.2942 T22: 0.2636 REMARK 3 T33: 0.1508 T12: -0.0229 REMARK 3 T13: -0.0173 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 0.2302 L22: 0.1767 REMARK 3 L33: 1.3713 L12: 0.0160 REMARK 3 L13: -0.0433 L23: -0.3174 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0175 S13: -0.1039 REMARK 3 S21: -0.0521 S22: -0.0086 S23: 0.0487 REMARK 3 S31: -0.1689 S32: 0.2223 S33: 0.0170 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 155 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0469 29.7780 -2.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.4551 T22: 0.1009 REMARK 3 T33: 0.2795 T12: -0.1453 REMARK 3 T13: 0.0720 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.6305 L22: 1.9590 REMARK 3 L33: 3.2691 L12: -0.6174 REMARK 3 L13: -1.2830 L23: 1.4498 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: -0.1234 S13: 0.1935 REMARK 3 S21: -0.1454 S22: 0.1660 S23: 0.1694 REMARK 3 S31: -0.3074 S32: 0.4804 S33: -0.3814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000095358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 86.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Z64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M SODIUM TARTRATE, REMARK 280 0.1M BIS-TRIS PROPANE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.16000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 THR A 608 REMARK 465 PRO A 609 REMARK 465 VAL A 610 REMARK 465 GLU A 611 REMARK 465 MET A 612 REMARK 465 ASN A 613 REMARK 465 THR A 614 REMARK 465 SER A 615 REMARK 465 LEU A 616 REMARK 465 VAL A 617 REMARK 465 LEU A 618 REMARK 465 ASP A 619 REMARK 465 PHE A 620 REMARK 465 ASN A 621 REMARK 465 ASN A 622 REMARK 465 SER A 623 REMARK 465 THR A 624 REMARK 465 CYS A 625 REMARK 465 TYR A 626 REMARK 465 MET A 627 REMARK 465 GLU C 17 REMARK 465 SER C 18 REMARK 465 GLU C 19 REMARK 465 LYS C 20 REMARK 465 ARG C 156 REMARK 465 ARG C 157 REMARK 465 ASP C 158 REMARK 465 VAL C 159 REMARK 465 ASN C 160 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 LEU B 25 REMARK 465 ASN B 26 REMARK 465 THR B 608 REMARK 465 PRO B 609 REMARK 465 VAL B 610 REMARK 465 GLU B 611 REMARK 465 MET B 612 REMARK 465 ASN B 613 REMARK 465 THR B 614 REMARK 465 SER B 615 REMARK 465 LEU B 616 REMARK 465 VAL B 617 REMARK 465 LEU B 618 REMARK 465 ASP B 619 REMARK 465 PHE B 620 REMARK 465 ASN B 621 REMARK 465 ASN B 622 REMARK 465 SER B 623 REMARK 465 THR B 624 REMARK 465 CYS B 625 REMARK 465 TYR B 626 REMARK 465 MET B 627 REMARK 465 GLU D 17 REMARK 465 SER D 18 REMARK 465 GLU D 19 REMARK 465 LYS D 20 REMARK 465 ARG D 156 REMARK 465 ARG D 157 REMARK 465 ASP D 158 REMARK 465 VAL D 159 REMARK 465 ASN D 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 524 O5 NAG E 1 1.47 REMARK 500 ND2 ASN A 172 O5 NAG A 800 1.49 REMARK 500 CG ASN A 524 C1 NAG E 1 1.61 REMARK 500 CG ASN A 204 C1 NAG A 801 1.66 REMARK 500 OD1 ASN A 524 C1 NAG E 1 1.68 REMARK 500 OD1 ASN A 204 C1 NAG A 801 1.70 REMARK 500 ND2 ASN A 524 C2 NAG E 1 1.94 REMARK 500 O5 LP4 D 300 O6 LP5 D 301 1.95 REMARK 500 O43 LP4 C 300 O2 MYR C 303 2.01 REMARK 500 O44 LP4 D 300 O2 DAO D 302 2.03 REMARK 500 O5 LP4 C 300 O6 LP5 C 301 2.04 REMARK 500 O44 LP4 C 300 C2 DAO C 302 2.07 REMARK 500 ND2 ASN A 204 C2 NAG A 801 2.08 REMARK 500 O44 LP4 D 300 C2 DAO D 302 2.12 REMARK 500 O43 LP4 D 300 O2 MYR D 303 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 52 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 35 -57.02 -122.31 REMARK 500 GLN A 42 -136.88 -92.35 REMARK 500 LYS A 43 37.24 -140.27 REMARK 500 LYS A 66 -42.25 58.35 REMARK 500 THR A 109 127.79 -35.97 REMARK 500 ASN A 159 -149.11 -123.25 REMARK 500 TYR A 169 -9.53 -58.66 REMARK 500 ASP A 264 32.58 -97.80 REMARK 500 ARG A 266 116.93 -29.53 REMARK 500 THR A 290 -166.71 -106.55 REMARK 500 ASP A 294 58.03 -113.28 REMARK 500 SER A 317 29.21 -69.32 REMARK 500 ASP A 323 -37.59 -134.85 REMARK 500 ASP A 347 52.95 -151.45 REMARK 500 LEU A 351 108.10 -58.65 REMARK 500 ASN A 407 -167.75 -119.06 REMARK 500 ASN A 415 51.65 -97.68 REMARK 500 GLN A 428 134.86 -36.80 REMARK 500 PHE A 438 -173.84 -172.56 REMARK 500 LEU A 444 53.61 -94.17 REMARK 500 LEU A 468 53.41 -90.17 REMARK 500 ASN A 479 -157.18 -111.40 REMARK 500 ASP A 483 18.18 56.77 REMARK 500 ASN A 484 29.94 49.17 REMARK 500 ASN A 528 -162.05 -115.39 REMARK 500 GLN A 540 -20.47 92.62 REMARK 500 ASN A 552 -166.42 -101.78 REMARK 500 ILE A 560 104.55 70.91 REMARK 500 SER A 577 67.24 -117.97 REMARK 500 ILE A 581 -117.28 -142.61 REMARK 500 CYS A 582 -8.28 -155.56 REMARK 500 LYS A 592 -72.97 -63.64 REMARK 500 GLN A 594 74.54 -100.03 REMARK 500 ASP C 99 50.25 36.23 REMARK 500 LYS C 128 -71.38 176.19 REMARK 500 GLU C 143 16.77 59.80 REMARK 500 PRO B 33 104.50 -56.82 REMARK 500 ILE B 35 -50.20 -130.61 REMARK 500 ASP B 41 26.20 48.47 REMARK 500 PRO B 48 106.45 -56.97 REMARK 500 PRO B 52 131.31 -23.66 REMARK 500 SER B 53 66.56 -101.50 REMARK 500 SER B 54 -10.59 -141.85 REMARK 500 LYS B 66 -62.15 71.85 REMARK 500 ARG B 86 61.75 39.77 REMARK 500 GLU B 88 14.21 56.77 REMARK 500 HIS B 98 -74.75 -63.77 REMARK 500 GLN B 114 -67.40 59.87 REMARK 500 PRO B 118 137.02 -39.01 REMARK 500 ASN B 159 -159.24 -131.14 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 323 VAL A 324 -148.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 804 REMARK 610 LP4 C 300 REMARK 610 LP4 D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VQ1 RELATED DB: PDB DBREF 3VQ2 A 22 627 UNP Q9QUK6 TLR4_MOUSE 22 627 DBREF 3VQ2 C 17 160 UNP Q9JHF9 LY96_MOUSE 17 160 DBREF 3VQ2 B 22 627 UNP Q9QUK6 TLR4_MOUSE 22 627 DBREF 3VQ2 D 17 160 UNP Q9JHF9 LY96_MOUSE 17 160 SEQRES 1 A 606 PRO GLY SER LEU ASN PRO CYS ILE GLU VAL VAL PRO ASN SEQRES 2 A 606 ILE THR TYR GLN CYS MET ASP GLN LYS LEU SER LYS VAL SEQRES 3 A 606 PRO ASP ASP ILE PRO SER SER THR LYS ASN ILE ASP LEU SEQRES 4 A 606 SER PHE ASN PRO LEU LYS ILE LEU LYS SER TYR SER PHE SEQRES 5 A 606 SER ASN PHE SER GLU LEU GLN TRP LEU ASP LEU SER ARG SEQRES 6 A 606 CYS GLU ILE GLU THR ILE GLU ASP LYS ALA TRP HIS GLY SEQRES 7 A 606 LEU HIS HIS LEU SER ASN LEU ILE LEU THR GLY ASN PRO SEQRES 8 A 606 ILE GLN SER PHE SER PRO GLY SER PHE SER GLY LEU THR SEQRES 9 A 606 SER LEU GLU ASN LEU VAL ALA VAL GLU THR LYS LEU ALA SEQRES 10 A 606 SER LEU GLU SER PHE PRO ILE GLY GLN LEU ILE THR LEU SEQRES 11 A 606 LYS LYS LEU ASN VAL ALA HIS ASN PHE ILE HIS SER CYS SEQRES 12 A 606 LYS LEU PRO ALA TYR PHE SER ASN LEU THR ASN LEU VAL SEQRES 13 A 606 HIS VAL ASP LEU SER TYR ASN TYR ILE GLN THR ILE THR SEQRES 14 A 606 VAL ASN ASP LEU GLN PHE LEU ARG GLU ASN PRO GLN VAL SEQRES 15 A 606 ASN LEU SER LEU ASP MET SER LEU ASN PRO ILE ASP PHE SEQRES 16 A 606 ILE GLN ASP GLN ALA PHE GLN GLY ILE LYS LEU HIS GLU SEQRES 17 A 606 LEU THR LEU ARG GLY ASN PHE ASN SER SER ASN ILE MET SEQRES 18 A 606 LYS THR CYS LEU GLN ASN LEU ALA GLY LEU HIS VAL HIS SEQRES 19 A 606 ARG LEU ILE LEU GLY GLU PHE LYS ASP GLU ARG ASN LEU SEQRES 20 A 606 GLU ILE PHE GLU PRO SER ILE MET GLU GLY LEU CYS ASP SEQRES 21 A 606 VAL THR ILE ASP GLU PHE ARG LEU THR TYR THR ASN ASP SEQRES 22 A 606 PHE SER ASP ASP ILE VAL LYS PHE HIS CYS LEU ALA ASN SEQRES 23 A 606 VAL SER ALA MET SER LEU ALA GLY VAL SER ILE LYS TYR SEQRES 24 A 606 LEU GLU ASP VAL PRO LYS HIS PHE LYS TRP GLN SER LEU SEQRES 25 A 606 SER ILE ILE ARG CYS GLN LEU LYS GLN PHE PRO THR LEU SEQRES 26 A 606 ASP LEU PRO PHE LEU LYS SER LEU THR LEU THR MET ASN SEQRES 27 A 606 LYS GLY SER ILE SER PHE LYS LYS VAL ALA LEU PRO SER SEQRES 28 A 606 LEU SER TYR LEU ASP LEU SER ARG ASN ALA LEU SER PHE SEQRES 29 A 606 SER GLY CYS CYS SER TYR SER ASP LEU GLY THR ASN SER SEQRES 30 A 606 LEU ARG HIS LEU ASP LEU SER PHE ASN GLY ALA ILE ILE SEQRES 31 A 606 MET SER ALA ASN PHE MET GLY LEU GLU GLU LEU GLN HIS SEQRES 32 A 606 LEU ASP PHE GLN HIS SER THR LEU LYS ARG VAL THR GLU SEQRES 33 A 606 PHE SER ALA PHE LEU SER LEU GLU LYS LEU LEU TYR LEU SEQRES 34 A 606 ASP ILE SER TYR THR ASN THR LYS ILE ASP PHE ASP GLY SEQRES 35 A 606 ILE PHE LEU GLY LEU THR SER LEU ASN THR LEU LYS MET SEQRES 36 A 606 ALA GLY ASN SER PHE LYS ASP ASN THR LEU SER ASN VAL SEQRES 37 A 606 PHE ALA ASN THR THR ASN LEU THR PHE LEU ASP LEU SER SEQRES 38 A 606 LYS CYS GLN LEU GLU GLN ILE SER TRP GLY VAL PHE ASP SEQRES 39 A 606 THR LEU HIS ARG LEU GLN LEU LEU ASN MET SER HIS ASN SEQRES 40 A 606 ASN LEU LEU PHE LEU ASP SER SER HIS TYR ASN GLN LEU SEQRES 41 A 606 TYR SER LEU SER THR LEU ASP CYS SER PHE ASN ARG ILE SEQRES 42 A 606 GLU THR SER LYS GLY ILE LEU GLN HIS PHE PRO LYS SER SEQRES 43 A 606 LEU ALA PHE PHE ASN LEU THR ASN ASN SER VAL ALA CYS SEQRES 44 A 606 ILE CYS GLU HIS GLN LYS PHE LEU GLN TRP VAL LYS GLU SEQRES 45 A 606 GLN LYS GLN PHE LEU VAL ASN VAL GLU GLN MET THR CYS SEQRES 46 A 606 ALA THR PRO VAL GLU MET ASN THR SER LEU VAL LEU ASP SEQRES 47 A 606 PHE ASN ASN SER THR CYS TYR MET SEQRES 1 C 144 GLU SER GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP SEQRES 2 C 144 ALA ILE ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE SEQRES 3 C 144 PRO ILE SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG SEQRES 4 C 144 GLY THR ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG SEQRES 5 C 144 GLY ASN LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER SEQRES 6 C 144 VAL ASN SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU SEQRES 7 C 144 CYS HIS GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA SEQRES 8 C 144 LEU LYS GLY GLU THR VAL ASN THR SER ILE PRO PHE SER SEQRES 9 C 144 PHE GLU GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS SEQRES 10 C 144 VAL ALA GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU SEQRES 11 C 144 PHE CYS LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL SEQRES 12 C 144 ASN SEQRES 1 B 606 PRO GLY SER LEU ASN PRO CYS ILE GLU VAL VAL PRO ASN SEQRES 2 B 606 ILE THR TYR GLN CYS MET ASP GLN LYS LEU SER LYS VAL SEQRES 3 B 606 PRO ASP ASP ILE PRO SER SER THR LYS ASN ILE ASP LEU SEQRES 4 B 606 SER PHE ASN PRO LEU LYS ILE LEU LYS SER TYR SER PHE SEQRES 5 B 606 SER ASN PHE SER GLU LEU GLN TRP LEU ASP LEU SER ARG SEQRES 6 B 606 CYS GLU ILE GLU THR ILE GLU ASP LYS ALA TRP HIS GLY SEQRES 7 B 606 LEU HIS HIS LEU SER ASN LEU ILE LEU THR GLY ASN PRO SEQRES 8 B 606 ILE GLN SER PHE SER PRO GLY SER PHE SER GLY LEU THR SEQRES 9 B 606 SER LEU GLU ASN LEU VAL ALA VAL GLU THR LYS LEU ALA SEQRES 10 B 606 SER LEU GLU SER PHE PRO ILE GLY GLN LEU ILE THR LEU SEQRES 11 B 606 LYS LYS LEU ASN VAL ALA HIS ASN PHE ILE HIS SER CYS SEQRES 12 B 606 LYS LEU PRO ALA TYR PHE SER ASN LEU THR ASN LEU VAL SEQRES 13 B 606 HIS VAL ASP LEU SER TYR ASN TYR ILE GLN THR ILE THR SEQRES 14 B 606 VAL ASN ASP LEU GLN PHE LEU ARG GLU ASN PRO GLN VAL SEQRES 15 B 606 ASN LEU SER LEU ASP MET SER LEU ASN PRO ILE ASP PHE SEQRES 16 B 606 ILE GLN ASP GLN ALA PHE GLN GLY ILE LYS LEU HIS GLU SEQRES 17 B 606 LEU THR LEU ARG GLY ASN PHE ASN SER SER ASN ILE MET SEQRES 18 B 606 LYS THR CYS LEU GLN ASN LEU ALA GLY LEU HIS VAL HIS SEQRES 19 B 606 ARG LEU ILE LEU GLY GLU PHE LYS ASP GLU ARG ASN LEU SEQRES 20 B 606 GLU ILE PHE GLU PRO SER ILE MET GLU GLY LEU CYS ASP SEQRES 21 B 606 VAL THR ILE ASP GLU PHE ARG LEU THR TYR THR ASN ASP SEQRES 22 B 606 PHE SER ASP ASP ILE VAL LYS PHE HIS CYS LEU ALA ASN SEQRES 23 B 606 VAL SER ALA MET SER LEU ALA GLY VAL SER ILE LYS TYR SEQRES 24 B 606 LEU GLU ASP VAL PRO LYS HIS PHE LYS TRP GLN SER LEU SEQRES 25 B 606 SER ILE ILE ARG CYS GLN LEU LYS GLN PHE PRO THR LEU SEQRES 26 B 606 ASP LEU PRO PHE LEU LYS SER LEU THR LEU THR MET ASN SEQRES 27 B 606 LYS GLY SER ILE SER PHE LYS LYS VAL ALA LEU PRO SER SEQRES 28 B 606 LEU SER TYR LEU ASP LEU SER ARG ASN ALA LEU SER PHE SEQRES 29 B 606 SER GLY CYS CYS SER TYR SER ASP LEU GLY THR ASN SER SEQRES 30 B 606 LEU ARG HIS LEU ASP LEU SER PHE ASN GLY ALA ILE ILE SEQRES 31 B 606 MET SER ALA ASN PHE MET GLY LEU GLU GLU LEU GLN HIS SEQRES 32 B 606 LEU ASP PHE GLN HIS SER THR LEU LYS ARG VAL THR GLU SEQRES 33 B 606 PHE SER ALA PHE LEU SER LEU GLU LYS LEU LEU TYR LEU SEQRES 34 B 606 ASP ILE SER TYR THR ASN THR LYS ILE ASP PHE ASP GLY SEQRES 35 B 606 ILE PHE LEU GLY LEU THR SER LEU ASN THR LEU LYS MET SEQRES 36 B 606 ALA GLY ASN SER PHE LYS ASP ASN THR LEU SER ASN VAL SEQRES 37 B 606 PHE ALA ASN THR THR ASN LEU THR PHE LEU ASP LEU SER SEQRES 38 B 606 LYS CYS GLN LEU GLU GLN ILE SER TRP GLY VAL PHE ASP SEQRES 39 B 606 THR LEU HIS ARG LEU GLN LEU LEU ASN MET SER HIS ASN SEQRES 40 B 606 ASN LEU LEU PHE LEU ASP SER SER HIS TYR ASN GLN LEU SEQRES 41 B 606 TYR SER LEU SER THR LEU ASP CYS SER PHE ASN ARG ILE SEQRES 42 B 606 GLU THR SER LYS GLY ILE LEU GLN HIS PHE PRO LYS SER SEQRES 43 B 606 LEU ALA PHE PHE ASN LEU THR ASN ASN SER VAL ALA CYS SEQRES 44 B 606 ILE CYS GLU HIS GLN LYS PHE LEU GLN TRP VAL LYS GLU SEQRES 45 B 606 GLN LYS GLN PHE LEU VAL ASN VAL GLU GLN MET THR CYS SEQRES 46 B 606 ALA THR PRO VAL GLU MET ASN THR SER LEU VAL LEU ASP SEQRES 47 B 606 PHE ASN ASN SER THR CYS TYR MET SEQRES 1 D 144 GLU SER GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP SEQRES 2 D 144 ALA ILE ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE SEQRES 3 D 144 PRO ILE SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG SEQRES 4 D 144 GLY THR ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG SEQRES 5 D 144 GLY ASN LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER SEQRES 6 D 144 VAL ASN SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU SEQRES 7 D 144 CYS HIS GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA SEQRES 8 D 144 LEU LYS GLY GLU THR VAL ASN THR SER ILE PRO PHE SER SEQRES 9 D 144 PHE GLU GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS SEQRES 10 D 144 VAL ALA GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU SEQRES 11 D 144 PHE CYS LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL SEQRES 12 D 144 ASN MODRES 3VQ2 ASN A 172 ASN GLYCOSYLATION SITE MODRES 3VQ2 ASN A 204 ASN GLYCOSYLATION SITE MODRES 3VQ2 ASN A 524 ASN GLYCOSYLATION SITE MODRES 3VQ2 ASN B 524 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 800 14 HET NAG A 801 14 HET NAG A 804 14 HET LP4 C 300 45 HET LP5 C 301 48 HET DAO C 302 13 HET MYR C 303 15 HET LP4 D 300 45 HET LP5 D 301 48 HET DAO D 302 13 HET MYR D 303 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3- HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D- HETNAM 3 LP4 GLUCOPYRANOSE HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM DAO LAURIC ACID HETNAM MYR MYRISTIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 7(C8 H15 N O6) FORMUL 10 LP4 2(C34 H66 N O12 P) FORMUL 11 LP5 2(C34 H66 N O12 P) FORMUL 12 DAO 2(C12 H24 O2) FORMUL 13 MYR 2(C14 H28 O2) FORMUL 18 HOH *17(H2 O) HELIX 1 1 PRO A 167 ASN A 172 5 6 HELIX 2 2 LEU A 194 ASN A 200 1 7 HELIX 3 3 SER A 238 ASN A 248 1 11 HELIX 4 4 GLU A 272 GLU A 277 5 6 HELIX 5 5 GLY A 278 VAL A 282 5 5 HELIX 6 6 SER A 296 LYS A 301 5 6 HELIX 7 7 PHE A 302 ALA A 306 5 5 HELIX 8 8 SER A 390 GLY A 395 1 6 HELIX 9 9 SER A 536 TYR A 538 5 3 HELIX 10 10 ILE A 560 PHE A 564 5 5 HELIX 11 11 HIS A 584 GLN A 589 1 6 HELIX 12 12 ASN A 600 MET A 604 5 5 HELIX 13 13 TYR C 102 ALA C 107 5 6 HELIX 14 14 PRO B 167 ASN B 172 5 6 HELIX 15 15 VAL B 191 ASP B 193 5 3 HELIX 16 16 LEU B 194 ASN B 200 1 7 HELIX 17 17 SER B 238 ASN B 248 1 11 HELIX 18 18 GLU B 272 VAL B 282 5 11 HELIX 19 19 SER B 296 VAL B 300 5 5 HELIX 20 20 PHE B 302 ALA B 306 5 5 HELIX 21 21 SER B 390 GLY B 395 1 6 HELIX 22 22 SER B 536 TYR B 538 5 3 HELIX 23 23 ILE B 560 PHE B 564 5 5 HELIX 24 24 HIS B 584 GLN B 594 1 11 HELIX 25 25 ASN B 600 MET B 604 5 5 HELIX 26 26 TYR D 102 ALA D 107 5 6 SHEET 1 A24 ILE A 29 VAL A 32 0 SHEET 2 A24 THR A 36 GLN A 38 -1 O GLN A 38 N ILE A 29 SHEET 3 A24 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37 SHEET 4 A24 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58 SHEET 5 A24 ASN A 105 ILE A 107 1 O ILE A 107 N LEU A 82 SHEET 6 A24 ASN A 129 VAL A 131 1 O VAL A 131 N LEU A 106 SHEET 7 A24 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130 SHEET 8 A24 HIS A 178 ASP A 180 1 O ASP A 180 N LEU A 154 SHEET 9 A24 SER A 206 ASP A 208 1 O SER A 206 N VAL A 179 SHEET 10 A24 LYS A 226 ARG A 233 1 O GLU A 229 N LEU A 207 SHEET 11 A24 HIS A 253 GLY A 260 1 O ILE A 258 N LEU A 232 SHEET 12 A24 THR A 283 LEU A 289 1 O ARG A 288 N LEU A 257 SHEET 13 A24 ALA A 310 ALA A 314 1 O ALA A 310 N PHE A 287 SHEET 14 A24 SER A 332 ILE A 336 1 O ILE A 336 N LEU A 313 SHEET 15 A24 SER A 353 THR A 357 1 O THR A 357 N ILE A 335 SHEET 16 A24 TYR A 375 ASP A 377 1 O TYR A 375 N LEU A 354 SHEET 17 A24 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376 SHEET 18 A24 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402 SHEET 19 A24 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425 SHEET 20 A24 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450 SHEET 21 A24 PHE A 498 ASP A 500 1 O ASP A 500 N LEU A 474 SHEET 22 A24 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499 SHEET 23 A24 THR A 546 ASP A 548 1 O ASP A 548 N LEU A 523 SHEET 24 A24 PHE A 570 ASN A 572 1 O ASN A 572 N LEU A 547 SHEET 1 B 2 ILE A 67 LEU A 68 0 SHEET 2 B 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68 SHEET 1 C 2 THR A 188 ILE A 189 0 SHEET 2 C 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189 SHEET 1 D 4 ILE A 363 SER A 364 0 SHEET 2 D 4 LEU A 383 CYS A 388 1 O SER A 384 N ILE A 363 SHEET 3 D 4 ALA A 409 MET A 412 1 O ILE A 411 N PHE A 385 SHEET 4 D 4 THR A 431 LYS A 433 1 O THR A 431 N ILE A 410 SHEET 1 E 2 LYS A 458 ILE A 459 0 SHEET 2 E 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459 SHEET 1 F 2 THR A 485 LEU A 486 0 SHEET 2 F 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486 SHEET 1 G 2 LEU A 533 ASP A 534 0 SHEET 2 G 2 SER A 557 LYS A 558 1 O LYS A 558 N LEU A 533 SHEET 1 H 6 TRP C 23 ASN C 26 0 SHEET 2 H 6 ILE C 31 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 H 6 LYS C 145 ILE C 154 -1 O ASN C 150 N SER C 35 SHEET 4 H 6 HIS C 130 ALA C 139 -1 N TYR C 131 O ILE C 153 SHEET 5 H 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 H 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82 SHEET 1 I 6 TRP C 23 ASN C 26 0 SHEET 2 I 6 ILE C 31 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 I 6 LYS C 145 ILE C 154 -1 O ASN C 150 N SER C 35 SHEET 4 I 6 HIS C 130 ALA C 139 -1 N TYR C 131 O ILE C 153 SHEET 5 I 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 I 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78 SHEET 1 J 3 ILE C 44 GLU C 49 0 SHEET 2 J 3 THR C 57 PHE C 65 -1 O HIS C 62 N SER C 47 SHEET 3 J 3 VAL C 113 PHE C 121 -1 O VAL C 113 N PHE C 65 SHEET 1 K24 ILE B 29 VAL B 32 0 SHEET 2 K24 THR B 36 GLN B 38 -1 O GLN B 38 N ILE B 29 SHEET 3 K24 ASN B 57 ASP B 59 1 O ASP B 59 N TYR B 37 SHEET 4 K24 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58 SHEET 5 K24 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82 SHEET 6 K24 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106 SHEET 7 K24 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130 SHEET 8 K24 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154 SHEET 9 K24 SER B 206 ASP B 208 1 O SER B 206 N VAL B 179 SHEET 10 K24 LYS B 226 ARG B 233 1 O GLU B 229 N LEU B 207 SHEET 11 K24 HIS B 253 GLY B 260 1 O ILE B 258 N LEU B 232 SHEET 12 K24 THR B 283 LEU B 289 1 O ARG B 288 N LEU B 257 SHEET 13 K24 ALA B 310 ALA B 314 1 O SER B 312 N LEU B 289 SHEET 14 K24 SER B 332 ILE B 336 1 O ILE B 336 N LEU B 313 SHEET 15 K24 SER B 353 THR B 357 1 O THR B 357 N ILE B 335 SHEET 16 K24 TYR B 375 ASP B 377 1 O ASP B 377 N LEU B 356 SHEET 17 K24 HIS B 401 ASP B 403 1 O ASP B 403 N LEU B 376 SHEET 18 K24 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402 SHEET 19 K24 TYR B 449 ASP B 451 1 O ASP B 451 N LEU B 425 SHEET 20 K24 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450 SHEET 21 K24 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474 SHEET 22 K24 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499 SHEET 23 K24 THR B 546 ASP B 548 1 O ASP B 548 N LEU B 523 SHEET 24 K24 PHE B 570 ASN B 572 1 O PHE B 570 N LEU B 547 SHEET 1 L 2 ILE B 67 LEU B 68 0 SHEET 2 L 2 THR B 91 ILE B 92 1 O THR B 91 N LEU B 68 SHEET 1 M 2 THR B 188 ILE B 189 0 SHEET 2 M 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189 SHEET 1 N 3 PHE B 385 CYS B 388 0 SHEET 2 N 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385 SHEET 3 N 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410 SHEET 1 O 2 LYS B 458 ILE B 459 0 SHEET 2 O 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459 SHEET 1 P 2 THR B 485 LEU B 486 0 SHEET 2 P 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486 SHEET 1 Q 2 LEU B 533 ASP B 534 0 SHEET 2 Q 2 SER B 557 LYS B 558 1 O LYS B 558 N LEU B 533 SHEET 1 R 6 TRP D 23 ASN D 26 0 SHEET 2 R 6 ILE D 31 TYR D 36 -1 O ILE D 32 N CYS D 25 SHEET 3 R 6 LYS D 145 HIS D 155 -1 O ASN D 150 N SER D 35 SHEET 4 R 6 GLY D 129 ALA D 139 -1 N ALA D 137 O PHE D 147 SHEET 5 R 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 R 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82 SHEET 1 S 6 TRP D 23 ASN D 26 0 SHEET 2 S 6 ILE D 31 TYR D 36 -1 O ILE D 32 N CYS D 25 SHEET 3 S 6 LYS D 145 HIS D 155 -1 O ASN D 150 N SER D 35 SHEET 4 S 6 GLY D 129 ALA D 139 -1 N ALA D 137 O PHE D 147 SHEET 5 S 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 S 6 ARG D 90 VAL D 93 -1 O GLU D 92 N PHE D 76 SHEET 1 T 3 SER D 45 GLU D 49 0 SHEET 2 T 3 THR D 57 PHE D 65 -1 O HIS D 62 N SER D 47 SHEET 3 T 3 VAL D 113 PHE D 121 -1 O ILE D 117 N VAL D 61 SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.04 SSBOND 2 CYS A 280 CYS A 304 1555 1555 2.04 SSBOND 3 CYS A 388 CYS A 389 1555 1555 2.02 SSBOND 4 CYS A 580 CYS A 606 1555 1555 2.04 SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.04 SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.05 SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.04 SSBOND 8 CYS B 28 CYS B 39 1555 1555 2.03 SSBOND 9 CYS B 280 CYS B 304 1555 1555 2.04 SSBOND 10 CYS B 388 CYS B 389 1555 1555 2.03 SSBOND 11 CYS B 580 CYS B 606 1555 1555 2.04 SSBOND 12 CYS D 25 CYS D 51 1555 1555 2.04 SSBOND 13 CYS D 37 CYS D 148 1555 1555 2.06 SSBOND 14 CYS D 95 CYS D 105 1555 1555 2.05 LINK ND2 ASN A 172 C1 NAG A 800 1555 1555 1.35 LINK ND2 ASN A 204 C1 NAG A 801 1555 1555 1.35 LINK ND2 ASN A 524 C1 NAG E 1 1555 1555 1.29 LINK C1 LP4 C 300 O6 LP5 C 301 1555 1555 1.45 LINK O44 LP4 C 300 C1 DAO C 302 1555 1555 1.46 LINK O43 LP4 C 300 C1 MYR C 303 1555 1555 1.46 LINK ND2 ASN B 524 C1 NAG F 1 1555 1555 1.44 LINK C1 LP4 D 300 O6 LP5 D 301 1555 1555 1.45 LINK O44 LP4 D 300 C1 DAO D 302 1555 1555 1.45 LINK O43 LP4 D 300 C1 MYR D 303 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 CISPEP 1 CYS A 388 CYS A 389 0 -9.54 CISPEP 2 GLU C 49 PRO C 50 0 -7.30 CISPEP 3 PRO C 127 LYS C 128 0 2.77 CISPEP 4 CYS B 388 CYS B 389 0 -6.06 CISPEP 5 GLU D 49 PRO D 50 0 -0.44 CRYST1 85.813 144.320 86.940 90.00 95.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011653 0.000000 0.001052 0.00000 SCALE2 0.000000 0.006929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011549 0.00000