HEADER OXYGEN TRANSPORT 09-APR-12 3VRE TITLE THE CRYSTAL STRUCTURE OF HEMOGLOBIN FROM WOOLLY MAMMOTH IN THE DEOXY TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA/DELTA HYBRID; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAMMUTHUS PRIMIGENIUS; SOURCE 3 ORGANISM_COMMON: MAMMOTH; SOURCE 4 ORGANISM_TAXID: 37349; SOURCE 5 STRAIN: SP1349 (KIA27805); SOURCE 6 GENE: HBA-T2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHE2; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MAMMUTHUS PRIMIGENIUS; SOURCE 14 ORGANISM_COMMON: MAMMOTH; SOURCE 15 ORGANISM_TAXID: 37349; SOURCE 16 STRAIN: SP1349 (KIA27805); SOURCE 17 GENE: HBB/D; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PHE2 KEYWDS WOOLLY MAMMOTH HEMOGLOBIN, OXYGEN TRANSPORT, OXYGEN STORAGE/TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.NOGUCHI,K.L.CAMPBELL,C.HO,S.-Y.PARK,J.R.H.TAME REVDAT 2 20-MAR-24 3VRE 1 REMARK LINK REVDAT 1 07-NOV-12 3VRE 0 JRNL AUTH H.NOGUCHI,K.L.CAMPBELL,C.HO,S.UNZAI,S.-Y.PARK,J.R.H.TAME JRNL TITL STRUCTURES OF HAEMOGLOBIN FROM WOOLLY MAMMOTH IN LIGANDED JRNL TITL 2 AND UNLIGANDED STATES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1441 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 23090393 JRNL DOI 10.1107/S0907444912029459 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 27132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 1.28000 REMARK 3 B13 (A**2) : 1.43000 REMARK 3 B23 (A**2) : -0.20000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.369 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4796 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6560 ; 1.359 ; 2.055 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 5.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;37.895 ;24.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;16.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.406 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3624 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2852 ; 0.555 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4582 ; 1.021 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 1.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1978 ; 2.751 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000095406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, AMMONIUM PHOSPHATE, REMARK 280 PH 6.5, BATCH, TEMPERATURE 293K, BATCH, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH B 337 1455 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 99 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 90 -61.16 -121.76 REMARK 500 HIS B 77 49.58 -147.94 REMARK 500 ASN B 80 59.00 -153.77 REMARK 500 LYS B 120 -39.56 -34.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 88.7 REMARK 620 3 HEM A 201 NB 84.0 94.2 REMARK 620 4 HEM A 201 NC 95.3 175.8 85.3 REMARK 620 5 HEM A 201 ND 101.1 85.2 174.8 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 89.3 REMARK 620 3 HEM B 201 NB 96.9 87.8 REMARK 620 4 HEM B 201 NC 95.4 175.4 91.8 REMARK 620 5 HEM B 201 ND 86.5 91.6 176.5 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 101.0 REMARK 620 3 HEM C 201 NB 104.0 91.2 REMARK 620 4 HEM C 201 NC 84.2 174.8 87.5 REMARK 620 5 HEM C 201 ND 80.5 88.7 175.4 92.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 88.6 REMARK 620 3 HEM D 201 NB 96.6 91.3 REMARK 620 4 HEM D 201 NC 96.4 174.9 87.5 REMARK 620 5 HEM D 201 ND 87.6 87.5 175.5 93.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VFR RELATED DB: PDB REMARK 900 RELATED ID: 3VFG RELATED DB: PDB DBREF 3VRE A 1 141 UNP D3U1H8 D3U1H8_MAMPR 2 142 DBREF 3VRE B 1 146 UNP D3U1H9 D3U1H9_MAMPR 2 147 DBREF 3VRE C 1 141 UNP D3U1H8 D3U1H8_MAMPR 2 142 DBREF 3VRE D 1 146 UNP D3U1H9 D3U1H9_MAMPR 2 147 SEQRES 1 A 141 VAL LEU SER ASP ASN ASP LYS THR ASN VAL LYS ALA THR SEQRES 2 A 141 TRP SER LYS VAL GLY ASP HIS ALA SER ASP TYR VAL ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE PHE SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 GLY GLN VAL LYS GLY HIS GLY LYS LYS VAL GLY GLU ALA SEQRES 6 A 141 LEU THR GLN ALA VAL GLY HIS LEU ASP ASP LEU PRO SER SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU SER SER HIS GLN PRO THR GLU PHE SEQRES 10 A 141 THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU SER SEQRES 11 A 141 ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL ASN LEU THR ALA ALA GLU LYS THR GLN VAL ALA ASN SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL LYS GLU LEU GLY GLY GLU SEQRES 3 B 146 ALA LEU SER ARG LEU LEU VAL VAL TYR PRO TRP THR ARG SEQRES 4 B 146 ARG PHE PHE GLU HIS PHE GLY ASP LEU SER THR ALA ASP SEQRES 5 B 146 ALA VAL LEU HIS ASN ALA LYS VAL LEU ALA HIS GLY GLU SEQRES 6 B 146 LYS VAL LEU THR SER PHE GLY GLU GLY LEU LYS HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE SER ASP LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLN ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL ILE VAL LEU ALA ARG HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO ASP VAL GLN ALA ALA TYR SEQRES 11 B 146 GLU LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER ASP ASN ASP LYS THR ASN VAL LYS ALA THR SEQRES 2 C 141 TRP SER LYS VAL GLY ASP HIS ALA SER ASP TYR VAL ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE PHE SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 GLY GLN VAL LYS GLY HIS GLY LYS LYS VAL GLY GLU ALA SEQRES 6 C 141 LEU THR GLN ALA VAL GLY HIS LEU ASP ASP LEU PRO SER SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU SER SER HIS GLN PRO THR GLU PHE SEQRES 10 C 141 THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU SER SEQRES 11 C 141 ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL ASN LEU THR ALA ALA GLU LYS THR GLN VAL ALA ASN SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL LYS GLU LEU GLY GLY GLU SEQRES 3 D 146 ALA LEU SER ARG LEU LEU VAL VAL TYR PRO TRP THR ARG SEQRES 4 D 146 ARG PHE PHE GLU HIS PHE GLY ASP LEU SER THR ALA ASP SEQRES 5 D 146 ALA VAL LEU HIS ASN ALA LYS VAL LEU ALA HIS GLY GLU SEQRES 6 D 146 LYS VAL LEU THR SER PHE GLY GLU GLY LEU LYS HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE SER ASP LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLN ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL ILE VAL LEU ALA ARG HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO ASP VAL GLN ALA ALA TYR SEQRES 11 D 146 GLU LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HEM A 201 43 HET HEM B 201 43 HET HEM C 201 43 HET HEM D 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 HOH *209(H2 O) HELIX 1 1 SER A 3 GLY A 18 1 16 HELIX 2 2 HIS A 20 PHE A 36 1 17 HELIX 3 3 PRO A 37 PHE A 43 5 7 HELIX 4 4 SER A 52 GLY A 71 1 20 HELIX 5 5 HIS A 72 ASP A 74 5 3 HELIX 6 6 ASP A 75 LEU A 80 1 6 HELIX 7 7 LEU A 80 LYS A 90 1 11 HELIX 8 8 VAL A 96 GLN A 113 1 18 HELIX 9 9 THR A 118 SER A 138 1 21 HELIX 10 10 THR B 4 GLY B 16 1 13 HELIX 11 11 ASN B 19 TYR B 35 1 17 HELIX 12 12 PRO B 36 GLY B 46 5 11 HELIX 13 13 THR B 50 ASN B 57 1 8 HELIX 14 14 ASN B 57 LEU B 75 1 19 HELIX 15 15 LYS B 76 LEU B 78 5 3 HELIX 16 16 ASN B 80 PHE B 85 1 6 HELIX 17 17 PHE B 85 LYS B 95 1 11 HELIX 18 18 PRO B 100 GLY B 119 1 20 HELIX 19 19 LYS B 120 PHE B 122 5 3 HELIX 20 20 THR B 123 HIS B 143 1 21 HELIX 21 21 SER C 3 GLY C 18 1 16 HELIX 22 22 HIS C 20 PHE C 36 1 17 HELIX 23 23 PRO C 37 PHE C 43 5 7 HELIX 24 24 SER C 52 HIS C 72 1 21 HELIX 25 25 ASP C 75 LEU C 80 1 6 HELIX 26 26 LEU C 80 LYS C 90 1 11 HELIX 27 27 PRO C 95 GLN C 113 1 19 HELIX 28 28 THR C 118 SER C 138 1 21 HELIX 29 29 THR D 4 GLY D 16 1 13 HELIX 30 30 ASN D 19 TYR D 35 1 17 HELIX 31 31 PRO D 36 GLU D 43 5 8 HELIX 32 32 THR D 50 HIS D 56 1 7 HELIX 33 33 ASN D 57 LEU D 75 1 19 HELIX 34 34 ASN D 80 PHE D 85 1 6 HELIX 35 35 PHE D 85 LYS D 95 1 11 HELIX 36 36 PRO D 100 GLY D 119 1 20 HELIX 37 37 LYS D 120 PHE D 122 5 3 HELIX 38 38 THR D 123 HIS D 143 1 21 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.21 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.21 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.24 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.21 SITE 1 AC1 17 TYR A 42 PHE A 43 HIS A 45 PHE A 46 SITE 2 AC1 17 HIS A 58 LYS A 61 VAL A 62 HIS A 87 SITE 3 AC1 17 LEU A 91 VAL A 93 ASN A 97 PHE A 98 SITE 4 AC1 17 LEU A 101 LEU A 136 HOH A 301 ALA B 58 SITE 5 AC1 17 LYS B 59 SITE 1 AC2 18 PHE B 41 PHE B 42 HIS B 44 HIS B 63 SITE 2 AC2 18 LYS B 66 VAL B 67 SER B 70 PHE B 85 SITE 3 AC2 18 LEU B 88 LEU B 91 HIS B 92 LEU B 96 SITE 4 AC2 18 VAL B 98 ASN B 102 PHE B 103 LEU B 106 SITE 5 AC2 18 LEU B 141 HIS D 44 SITE 1 AC3 20 MET C 32 TYR C 42 PHE C 43 HIS C 45 SITE 2 AC3 20 HIS C 58 LYS C 61 VAL C 62 ALA C 65 SITE 3 AC3 20 LEU C 83 LEU C 86 HIS C 87 LEU C 91 SITE 4 AC3 20 VAL C 93 ASN C 97 PHE C 98 LEU C 101 SITE 5 AC3 20 LEU C 136 HOH C 317 HOH C 325 HOH C 335 SITE 1 AC4 17 LYS B 95 PHE D 41 PHE D 45 HIS D 63 SITE 2 AC4 17 LYS D 66 VAL D 67 SER D 70 PHE D 71 SITE 3 AC4 17 LEU D 88 LEU D 91 HIS D 92 LEU D 96 SITE 4 AC4 17 ASN D 102 PHE D 103 LEU D 106 LEU D 141 SITE 5 AC4 17 HOH D 346 CRYST1 53.640 59.080 62.100 96.72 114.36 113.86 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018643 0.008246 0.011967 0.00000 SCALE2 0.000000 0.018508 0.006707 0.00000 SCALE3 0.000000 0.000000 0.018802 0.00000