HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-APR-12 3VS3 TITLE CRYSTAL STRUCTURE OF HCK COMPLEXED WITH A PYRROLO-PYRIMIDINE INHIBITOR TITLE 2 7-[TRANS-4-(4-METHYLPIPERAZIN-1-YL)CYCLOHEXYL]-5-(4-PHENOXYPHENYL)- TITLE 3 7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 81-526; COMPND 5 SYNONYM: HEMATOPOIETIC CELL KINASE, HEMOPOIETIC CELL KINASE, P59- COMPND 6 HCK/P60-HCK, P59HCK, P61HCK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.KURATANI,Y.TOMAEBCHI,N.HANDA,S.YOKOYAMA REVDAT 4 13-NOV-24 3VS3 1 REMARK REVDAT 3 06-DEC-23 3VS3 1 REMARK REVDAT 2 08-NOV-23 3VS3 1 REMARK SEQADV LINK REVDAT 1 01-MAY-13 3VS3 0 JRNL AUTH Y.SAITO,H.YUKI,M.KURATANI,Y.HASHIZUME,S.TAKAGI,T.HONMA, JRNL AUTH 2 A.TANAKA,M.SHIROUZU,J.MIKUNI,N.HANDA,I.OGAHARA,A.SONE, JRNL AUTH 3 Y.NAJIMA,Y.TOMABECHI,M.WAKIYAMA,N.UCHIDA, JRNL AUTH 4 M.TOMIZAWA-MURASAWA,A.KANEKO,S.TANAKA,N.SUZUKI,H.KAJITA, JRNL AUTH 5 Y.AOKI,O.OHARA,L.D.SHULTZ,T.FUKAMI,T.GOTO,S.TANIGUCHI, JRNL AUTH 6 S.YOKOYAMA,F.ISHIKAWA JRNL TITL A PYRROLO-PYRIMIDINE DERIVATIVE TARGETS HUMAN PRIMARY AML JRNL TITL 2 STEM CELLS IN VIVO JRNL REF SCI TRANSL MED V. 5 1RA52 2013 JRNL REFN ISSN 1946-6234 JRNL PMID 23596204 JRNL DOI 10.1126/SCITRANSLMED.3004387 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 66221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4656 - 6.2446 0.96 2674 119 0.2159 0.2403 REMARK 3 2 6.2446 - 4.9628 1.00 2689 141 0.2066 0.2652 REMARK 3 3 4.9628 - 4.3373 0.99 2633 145 0.1714 0.2191 REMARK 3 4 4.3373 - 3.9416 0.99 2659 148 0.1771 0.2291 REMARK 3 5 3.9416 - 3.6595 0.99 2608 158 0.1952 0.2278 REMARK 3 6 3.6595 - 3.4440 1.00 2659 138 0.2026 0.2429 REMARK 3 7 3.4440 - 3.2718 1.00 2621 150 0.2120 0.2428 REMARK 3 8 3.2718 - 3.1295 1.00 2674 144 0.2182 0.2881 REMARK 3 9 3.1295 - 3.0091 1.00 2625 145 0.2244 0.2905 REMARK 3 10 3.0091 - 2.9053 1.00 2655 130 0.2390 0.2908 REMARK 3 11 2.9053 - 2.8145 1.00 2638 137 0.2535 0.3269 REMARK 3 12 2.8145 - 2.7341 1.00 2653 137 0.2603 0.3520 REMARK 3 13 2.7341 - 2.6622 0.99 2621 139 0.2850 0.4250 REMARK 3 14 2.6622 - 2.5973 1.00 2590 161 0.2904 0.3908 REMARK 3 15 2.5973 - 2.5383 1.00 2658 104 0.2778 0.3834 REMARK 3 16 2.5383 - 2.4843 1.00 2678 144 0.2746 0.3381 REMARK 3 17 2.4843 - 2.4346 1.00 2570 138 0.2863 0.3561 REMARK 3 18 2.4346 - 2.3887 1.00 2659 150 0.2957 0.4060 REMARK 3 19 2.3887 - 2.3460 0.99 2627 151 0.2999 0.3564 REMARK 3 20 2.3460 - 2.3063 0.99 2533 147 0.2899 0.3546 REMARK 3 21 2.3063 - 2.2691 0.99 2696 123 0.3289 0.3068 REMARK 3 22 2.2691 - 2.2342 0.99 2613 140 0.3308 0.4217 REMARK 3 23 2.2342 - 2.2013 0.99 2556 139 0.3561 0.3934 REMARK 3 24 2.2013 - 2.1703 0.85 2276 128 0.3956 0.4223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 50.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58400 REMARK 3 B22 (A**2) : 0.62430 REMARK 3 B33 (A**2) : 0.95970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29380 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7273 REMARK 3 ANGLE : 0.802 9831 REMARK 3 CHIRALITY : 0.058 1040 REMARK 3 PLANARITY : 0.004 1249 REMARK 3 DIHEDRAL : 15.380 2757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000095431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66782 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.1M CALCIUM ACETATE, 20% REMARK 280 GLYCEROL, 21% PEG6000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.79600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 MET A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 ILE A 84 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLU A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 MET B 80 REMARK 465 GLY B 81 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 ILE B 84 REMARK 465 LEU B 208 REMARK 465 ASP B 209 REMARK 465 ASN B 210 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLU B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 706 O HOH A 854 2.09 REMARK 500 OE2 GLU A 528 O HOH A 832 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 210 -39.48 -151.05 REMARK 500 SER A 243 -87.48 -114.73 REMARK 500 HIS A 289 -19.49 -140.00 REMARK 500 ARG A 385 -16.05 81.88 REMARK 500 ASP A 386 58.30 -142.44 REMARK 500 VAL A 410 46.69 -104.33 REMARK 500 TRP A 499 36.58 -99.45 REMARK 500 HIS B 98 -168.92 -107.16 REMARK 500 ASN B 235 72.82 -69.10 REMARK 500 SER B 243 -107.81 -90.44 REMARK 500 PRO B 245 153.01 -43.58 REMARK 500 ARG B 385 -19.73 80.70 REMARK 500 ASP B 386 58.31 -143.05 REMARK 500 GLU B 485 -77.28 -46.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 490 OE1 REMARK 620 2 GLU A 490 OE2 41.6 REMARK 620 3 GLU B 524 O 67.6 60.2 REMARK 620 4 PTR B 527 O 111.8 70.5 76.0 REMARK 620 5 HOH B 719 O 132.0 111.4 64.6 59.3 REMARK 620 6 HOH B 859 O 84.0 118.6 76.2 139.0 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 524 O REMARK 620 2 PTR A 527 O 88.3 REMARK 620 3 GLU A 529 OE2 165.7 106.0 REMARK 620 4 HOH A 726 O 64.4 59.5 121.8 REMARK 620 5 GLU B 490 OE1 76.6 116.1 97.4 140.6 REMARK 620 6 GLU B 490 OE2 73.8 73.5 110.8 115.8 42.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSE B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VRY RELATED DB: PDB REMARK 900 RELATED ID: 3VRZ RELATED DB: PDB REMARK 900 RELATED ID: 3VS0 RELATED DB: PDB REMARK 900 RELATED ID: 3VS1 RELATED DB: PDB REMARK 900 RELATED ID: 3VS2 RELATED DB: PDB REMARK 900 RELATED ID: 3VS4 RELATED DB: PDB REMARK 900 RELATED ID: 3VS5 RELATED DB: PDB REMARK 900 RELATED ID: 3VS6 RELATED DB: PDB REMARK 900 RELATED ID: 3VS7 RELATED DB: PDB DBREF 3VS3 A 86 531 UNP P08631 HCK_HUMAN 81 526 DBREF 3VS3 B 86 531 UNP P08631 HCK_HUMAN 81 526 SEQADV 3VS3 GLY A 78 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ALA A 79 UNP P08631 EXPRESSION TAG SEQADV 3VS3 MET A 80 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLY A 81 UNP P08631 EXPRESSION TAG SEQADV 3VS3 SER A 82 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLY A 83 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ILE A 84 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ARG A 85 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VS3 GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VS3 ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQADV 3VS3 GLY B 78 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ALA B 79 UNP P08631 EXPRESSION TAG SEQADV 3VS3 MET B 80 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLY B 81 UNP P08631 EXPRESSION TAG SEQADV 3VS3 SER B 82 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLY B 83 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ILE B 84 UNP P08631 EXPRESSION TAG SEQADV 3VS3 ARG B 85 UNP P08631 EXPRESSION TAG SEQADV 3VS3 GLU B 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VS3 GLU B 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VS3 ILE B 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQRES 1 A 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO SEQRES 1 B 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 B 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 B 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 B 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 B 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 B 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 B 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 B 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 B 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 B 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 B 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 B 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 B 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 B 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 B 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 B 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 B 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 B 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 B 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 B 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 B 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 B 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 B 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 B 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 B 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 B 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 B 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 B 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 B 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 B 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 B 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 B 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 B 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 B 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 B 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO MODRES 3VS3 PTR A 527 TYR O-PHOSPHOTYROSINE MODRES 3VS3 PTR B 527 TYR O-PHOSPHOTYROSINE HET PTR A 527 16 HET PTR B 527 16 HET VSE A 601 36 HET CA A 602 1 HET CL A 603 1 HET CA B 602 1 HET VSE B 601 36 HET CL B 603 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM VSE 7-[TRANS-4-(4-METHYLPIPERAZIN-1-YL)CYCLOHEXYL]-5-(4- HETNAM 2 VSE PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 VSE 2(C29 H34 N6 O) FORMUL 4 CA 2(CA 2+) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *336(H2 O) HELIX 1 1 SER A 143 GLU A 147 5 5 HELIX 2 2 SER A 155 LEU A 164 1 10 HELIX 3 3 THR A 223 GLY A 234 1 12 HELIX 4 4 PRO A 263 GLU A 265 5 3 HELIX 5 5 SER A 303 LYS A 315 1 13 HELIX 6 6 SER A 345 SER A 352 1 8 HELIX 7 7 SER A 352 LYS A 357 1 6 HELIX 8 8 PRO A 359 ARG A 380 1 22 HELIX 9 9 ARG A 388 ALA A 390 5 3 HELIX 10 10 PRO A 425 THR A 429 5 5 HELIX 11 11 ALA A 430 ASN A 435 1 6 HELIX 12 12 THR A 440 THR A 457 1 18 HELIX 13 13 SER A 467 GLY A 478 1 12 HELIX 14 14 PRO A 488 TRP A 499 1 12 HELIX 15 15 ARG A 502 ARG A 506 5 5 HELIX 16 16 THR A 508 ASP A 518 1 11 HELIX 17 17 ALA A 522 GLN A 526 5 5 HELIX 18 18 SER B 143 GLU B 147 5 5 HELIX 19 19 SER B 155 LEU B 164 1 10 HELIX 20 20 THR B 223 TYR B 231 1 9 HELIX 21 21 PRO B 263 GLU B 265 5 3 HELIX 22 22 SER B 303 LYS B 315 1 13 HELIX 23 23 SER B 345 SER B 352 1 8 HELIX 24 24 SER B 352 GLN B 358 1 7 HELIX 25 25 PRO B 359 ARG B 380 1 22 HELIX 26 26 ARG B 388 ALA B 390 5 3 HELIX 27 27 GLY B 406 ILE B 411 1 6 HELIX 28 28 PRO B 425 THR B 429 5 5 HELIX 29 29 ALA B 430 GLY B 437 1 8 HELIX 30 30 THR B 440 THR B 457 1 18 HELIX 31 31 SER B 467 ARG B 477 1 11 HELIX 32 32 PRO B 488 TRP B 499 1 12 HELIX 33 33 ARG B 502 ARG B 506 5 5 HELIX 34 34 THR B 508 ASP B 518 1 11 HELIX 35 35 ALA B 522 GLN B 526 5 5 SHEET 1 A 5 GLU A 130 PRO A 134 0 SHEET 2 A 5 TRP A 119 SER A 124 -1 N TRP A 120 O ILE A 133 SHEET 3 A 5 GLN A 109 SER A 116 -1 N LEU A 113 O LYS A 121 SHEET 4 A 5 ILE A 87 ALA A 90 -1 N VAL A 88 O MET A 110 SHEET 5 A 5 VAL A 138 ARG A 140 -1 O ALA A 139 N VAL A 89 SHEET 1 B 6 PHE A 150 PHE A 151 0 SHEET 2 B 6 PHE A 173 ASP A 177 1 O ILE A 175 N PHE A 151 SHEET 3 B 6 TYR A 185 ASP A 193 -1 O SER A 186 N ARG A 176 SHEET 4 B 6 GLY A 197 THR A 207 -1 O GLY A 197 N ASP A 193 SHEET 5 B 6 PHE A 213 TYR A 214 -1 O TYR A 214 N ARG A 206 SHEET 6 B 6 THR A 220 PHE A 221 -1 O PHE A 221 N PHE A 213 SHEET 1 C 5 LEU A 267 GLY A 276 0 SHEET 2 C 5 GLY A 279 TYR A 286 -1 O MET A 283 N LYS A 271 SHEET 3 C 5 THR A 290 MET A 297 -1 O VAL A 292 N ALA A 284 SHEET 4 C 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295 SHEET 5 C 5 LEU A 325 VAL A 329 -1 N HIS A 326 O ILE A 337 SHEET 1 D 2 ILE A 392 VAL A 394 0 SHEET 2 D 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 E 5 GLU B 130 PRO B 134 0 SHEET 2 E 5 TRP B 119 SER B 124 -1 N TRP B 120 O ILE B 133 SHEET 3 E 5 GLN B 109 SER B 116 -1 N LEU B 113 O LYS B 121 SHEET 4 E 5 ILE B 87 ALA B 90 -1 N VAL B 88 O MET B 110 SHEET 5 E 5 VAL B 138 ARG B 140 -1 O ALA B 139 N VAL B 89 SHEET 1 F 4 PHE B 150 PHE B 151 0 SHEET 2 F 4 PHE B 173 ASP B 177 1 O ILE B 175 N PHE B 151 SHEET 3 F 4 TYR B 185 ASP B 193 -1 O SER B 186 N ARG B 176 SHEET 4 F 4 GLY B 197 LYS B 204 -1 O GLY B 197 N ASP B 193 SHEET 1 G 5 LEU B 267 GLY B 276 0 SHEET 2 G 5 GLY B 279 TYR B 286 -1 O VAL B 281 N LEU B 273 SHEET 3 G 5 THR B 290 MET B 297 -1 O VAL B 292 N ALA B 284 SHEET 4 G 5 TYR B 335 THR B 338 -1 O THR B 338 N ALA B 293 SHEET 5 G 5 LEU B 325 VAL B 329 -1 N HIS B 326 O ILE B 337 SHEET 1 H 2 ILE B 392 VAL B 394 0 SHEET 2 H 2 CYS B 400 ILE B 402 -1 O LYS B 401 N LEU B 393 LINK C GLN A 526 N PTR A 527 1555 1555 1.33 LINK C PTR A 527 N GLU A 528 1555 1555 1.33 LINK C GLN B 526 N PTR B 527 1555 1555 1.33 LINK C PTR B 527 N GLU B 528 1555 1555 1.33 LINK OE1 GLU A 490 CA CA B 602 1555 1555 3.05 LINK OE2 GLU A 490 CA CA B 602 1555 1555 3.14 LINK O GLU A 524 CA CA A 602 1555 1555 2.93 LINK O PTR A 527 CA CA A 602 1555 1555 2.93 LINK OE2 GLU A 529 CA CA A 602 1555 1555 3.04 LINK CA CA A 602 O HOH A 726 1555 1555 3.17 LINK CA CA A 602 OE1 GLU B 490 1555 1555 2.98 LINK CA CA A 602 OE2 GLU B 490 1555 1555 3.08 LINK O GLU B 524 CA CA B 602 1555 1555 3.05 LINK O PTR B 527 CA CA B 602 1555 1555 3.04 LINK CA CA B 602 O HOH B 719 1555 1555 3.16 LINK CA CA B 602 O HOH B 859 1555 1555 3.11 CISPEP 1 ASN A 210 GLY A 211 0 -0.34 CISPEP 2 GLY A 300 SER A 301 0 14.06 CISPEP 3 SER A 301 MET A 302 0 -1.16 CISPEP 4 GLU A 332 PRO A 333 0 1.22 CISPEP 5 PHE A 424 PRO A 425 0 -9.91 CISPEP 6 SER B 301 MET B 302 0 -1.92 CISPEP 7 GLU B 332 PRO B 333 0 1.69 SITE 1 AC1 15 LEU A 273 VAL A 281 ALA A 293 LYS A 295 SITE 2 AC1 15 MET A 314 VAL A 323 LEU A 325 THR A 338 SITE 3 AC1 15 GLU A 339 MET A 341 ASP A 348 LEU A 393 SITE 4 AC1 15 ASP A 404 PHE A 405 HOH A 706 SITE 1 AC2 4 GLU A 524 PTR A 527 GLU A 529 GLU B 490 SITE 1 AC3 4 ARG A 85 ARG A 123 LEU A 125 ARG A 128 SITE 1 AC4 3 GLU A 490 GLU B 524 PTR B 527 SITE 1 AC5 15 LEU B 273 VAL B 281 ALA B 293 LYS B 295 SITE 2 AC5 15 VAL B 323 LEU B 325 THR B 338 GLU B 339 SITE 3 AC5 15 MET B 341 ASP B 348 LEU B 393 ASP B 404 SITE 4 AC5 15 PHE B 405 HOH B 718 HOH B 861 SITE 1 AC6 3 ARG B 85 ARG B 123 ARG B 128 CRYST1 48.450 73.592 180.712 90.00 96.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020640 0.000000 0.002280 0.00000 SCALE2 0.000000 0.013588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005567 0.00000