HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-APR-12 3VS6
TITLE CRYSTAL STRUCTURE OF HCK COMPLEXED WITH A PYRAZOLO-PYRIMIDINE
TITLE 2 INHIBITOR TERT-BUTYL {4-[4-AMINO-1-(PROPAN-2-YL)-1H-PYRAZOLO[3,4-
TITLE 3 D]PYRIMIDIN-3-YL]-2-METHOXYPHENYL}CARBAMATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 81-526;
COMPND 5 SYNONYM: HEMATOPOIETIC CELL KINASE, HEMOPOIETIC CELL KINASE, P59-
COMPND 6 HCK/P60-HCK, P59HCK, P61HCK;
COMPND 7 EC: 2.7.10.2;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HCK;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS
KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.KURATANI,K.HONDA,Y.TOMABECHI,M.TOYAMA,N.HANDA,S.YOKOYAMA
REVDAT 4 30-OCT-24 3VS6 1 REMARK
REVDAT 3 06-DEC-23 3VS6 1 REMARK
REVDAT 2 08-NOV-23 3VS6 1 REMARK SEQADV LINK
REVDAT 1 01-MAY-13 3VS6 0
JRNL AUTH Y.SAITO,H.YUKI,M.KURATANI,Y.HASHIZUME,S.TAKAGI,T.HONMA,
JRNL AUTH 2 A.TANAKA,M.SHIROUZU,J.MIKUNI,N.HANDA,I.OGAHARA,A.SONE,
JRNL AUTH 3 Y.NAJIMA,Y.TOMABECHI,M.WAKIYAMA,N.UCHIDA,
JRNL AUTH 4 M.TOMIZAWA-MURASAWA,A.KANEKO,S.TANAKA,N.SUZUKI,H.KAJITA,
JRNL AUTH 5 Y.AOKI,O.OHARA,L.D.SHULTZ,T.FUKAMI,T.GOTO,S.TANIGUCHI,
JRNL AUTH 6 S.YOKOYAMA,F.ISHIKAWA
JRNL TITL A PYRROLO-PYRIMIDINE DERIVATIVE TARGETS HUMAN PRIMARY AML
JRNL TITL 2 STEM CELLS IN VIVO
JRNL REF SCI TRANSL MED V. 5 1RA52 2013
JRNL REFN ISSN 1946-6234
JRNL PMID 23596204
JRNL DOI 10.1126/SCITRANSLMED.3004387
REMARK 2
REMARK 2 RESOLUTION. 2.37 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.09
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.680
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 3 NUMBER OF REFLECTIONS : 51828
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.233
REMARK 3 R VALUE (WORKING SET) : 0.230
REMARK 3 FREE R VALUE : 0.280
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 2677
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.0995 - 6.3277 0.98 2863 138 0.2106 0.2343
REMARK 3 2 6.3277 - 5.0243 1.00 2756 153 0.2142 0.2478
REMARK 3 3 5.0243 - 4.3897 1.00 2691 163 0.1724 0.2059
REMARK 3 4 4.3897 - 3.9886 0.99 2745 125 0.1915 0.2319
REMARK 3 5 3.9886 - 3.7028 1.00 2657 156 0.2122 0.2433
REMARK 3 6 3.7028 - 3.4846 1.00 2700 150 0.2374 0.3312
REMARK 3 7 3.4846 - 3.3101 1.00 2665 161 0.2468 0.2858
REMARK 3 8 3.3101 - 3.1661 1.00 2682 135 0.2510 0.3643
REMARK 3 9 3.1661 - 3.0442 1.00 2650 140 0.2535 0.3335
REMARK 3 10 3.0442 - 2.9392 1.00 2711 124 0.2691 0.3667
REMARK 3 11 2.9392 - 2.8473 1.00 2663 134 0.2989 0.4248
REMARK 3 12 2.8473 - 2.7659 1.00 2630 150 0.2902 0.3650
REMARK 3 13 2.7659 - 2.6931 1.00 2693 132 0.2957 0.3738
REMARK 3 14 2.6931 - 2.6274 1.00 2665 135 0.2831 0.3478
REMARK 3 15 2.6274 - 2.5677 1.00 2647 137 0.2919 0.3525
REMARK 3 16 2.5677 - 2.5130 1.00 2671 136 0.3037 0.3923
REMARK 3 17 2.5130 - 2.4628 1.00 2612 167 0.3336 0.3707
REMARK 3 18 2.4628 - 2.4163 0.99 2641 143 0.3567 0.4165
REMARK 3 19 2.4163 - 2.3731 0.69 1851 98 0.3835 0.4595
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.86
REMARK 3 K_SOL : 0.35
REMARK 3 B_SOL : 64.09
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.760
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 59.95
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.61
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.05980
REMARK 3 B22 (A**2) : -1.19020
REMARK 3 B33 (A**2) : 1.13040
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 7268
REMARK 3 ANGLE : 0.974 9830
REMARK 3 CHIRALITY : 0.064 1042
REMARK 3 PLANARITY : 0.004 1250
REMARK 3 DIHEDRAL : 16.302 2738
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3VS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-12.
REMARK 100 THE DEPOSITION ID IS D_1000095434.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-DEC-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 9
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL32XU
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : SI
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51828
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6
REMARK 200 DATA REDUNDANCY IN SHELL : 9.00
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3VRY
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.1M CALCIUM ACETATE, 20%
REMARK 280 GLYCEROL, 21% PEG6000, PH 9, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.30650
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.06250
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.19600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.06250
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.30650
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.19600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 78
REMARK 465 ALA A 79
REMARK 465 MET A 80
REMARK 465 GLY A 81
REMARK 465 SER A 82
REMARK 465 GLY A 83
REMARK 465 ILE A 84
REMARK 465 GLU A 412
REMARK 465 ASP A 413
REMARK 465 ASN A 414
REMARK 465 GLU A 415
REMARK 465 TYR A 416
REMARK 465 THR A 417
REMARK 465 ALA A 418
REMARK 465 ARG A 419
REMARK 465 GLU A 420
REMARK 465 GLY A 421
REMARK 465 ALA A 422
REMARK 465 LYS A 423
REMARK 465 GLY B 78
REMARK 465 ALA B 79
REMARK 465 MET B 80
REMARK 465 GLY B 81
REMARK 465 SER B 82
REMARK 465 GLY B 83
REMARK 465 ILE B 84
REMARK 465 GLU B 412
REMARK 465 ASP B 413
REMARK 465 ASN B 414
REMARK 465 GLU B 415
REMARK 465 TYR B 416
REMARK 465 THR B 417
REMARK 465 ALA B 418
REMARK 465 ARG B 419
REMARK 465 GLU B 420
REMARK 465 GLY B 421
REMARK 465 ALA B 422
REMARK 465 LYS B 423
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 846 O HOH A 855 2.07
REMARK 500 O HOH A 706 O HOH A 740 2.08
REMARK 500 O GLN B 240 O HOH B 824 2.10
REMARK 500 O HOH A 718 O HOH A 853 2.11
REMARK 500 O ILE A 154 O HOH A 867 2.12
REMARK 500 O TYR B 231 O HOH B 753 2.12
REMARK 500 O HOH A 838 O HOH A 868 2.13
REMARK 500 O LEU B 170 OG SER B 243 2.15
REMARK 500 O ASP A 177 O HOH A 867 2.16
REMARK 500 OG1 THR B 440 O HOH B 741 2.18
REMARK 500 O HOH B 732 O HOH B 809 2.19
REMARK 500 OD1 ASP A 158 O HOH A 814 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO A 166 C - N - CA ANGL. DEV. = 9.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 98 -169.67 -106.05
REMARK 500 GLU A 114 116.01 -162.40
REMARK 500 SER A 116 55.25 -163.78
REMARK 500 ASP A 142 17.66 56.88
REMARK 500 PRO A 166 140.86 -33.95
REMARK 500 LEU A 208 -164.42 -71.96
REMARK 500 SER A 243 -99.83 -96.91
REMARK 500 LYS A 288 -5.31 64.28
REMARK 500 PRO A 299 77.82 -59.44
REMARK 500 MET A 302 105.02 -46.85
REMARK 500 ARG A 385 -18.35 80.12
REMARK 500 ASP A 386 58.14 -143.83
REMARK 500 TRP A 499 34.18 -98.92
REMARK 500 HIS B 98 -167.10 -104.27
REMARK 500 LYS B 106 108.38 -57.94
REMARK 500 THR B 207 -126.83 -82.93
REMARK 500 ASN B 210 -64.61 -104.21
REMARK 500 ILE B 215 -63.37 -97.63
REMARK 500 LYS B 233 -78.89 -57.19
REMARK 500 ASN B 235 82.40 -67.10
REMARK 500 ASP B 236 49.24 -83.92
REMARK 500 LEU B 242 104.73 -57.47
REMARK 500 SER B 243 -111.53 -73.85
REMARK 500 ASN B 287 43.10 38.76
REMARK 500 LYS B 288 10.35 59.80
REMARK 500 PRO B 299 71.08 -57.65
REMARK 500 MET B 302 93.81 -49.96
REMARK 500 ARG B 385 -20.06 78.41
REMARK 500 ASP B 386 57.52 -142.38
REMARK 500 ASN B 435 -86.53 -66.05
REMARK 500 TRP B 499 49.03 -100.20
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 604 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 490 OE2
REMARK 620 2 GLU A 490 OE1 42.3
REMARK 620 3 GLU B 524 O 61.1 68.3
REMARK 620 4 PTR B 527 O 69.0 111.3 78.0
REMARK 620 5 HOH B 807 O 119.3 83.2 77.4 144.0
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 601 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 524 O
REMARK 620 2 PTR A 527 O 88.6
REMARK 620 3 GLU A 529 OE2 160.6 107.9
REMARK 620 4 HOH A 745 O 70.9 65.7 124.7
REMARK 620 5 HOH A 825 O 79.7 150.4 89.8 84.7
REMARK 620 6 GLU B 490 OE2 67.0 79.4 105.2 125.1 119.4
REMARK 620 7 GLU B 490 OE1 75.6 122.0 86.7 145.6 81.5 42.9
REMARK 620 N 1 2 3 4 5 6
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSH A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VSH B 603
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3VRY RELATED DB: PDB
REMARK 900 RELATED ID: 3VRZ RELATED DB: PDB
REMARK 900 RELATED ID: 3VS0 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS1 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS2 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS3 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS4 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS5 RELATED DB: PDB
REMARK 900 RELATED ID: 3VS7 RELATED DB: PDB
DBREF 3VS6 A 86 531 UNP P08631 HCK_HUMAN 81 526
DBREF 3VS6 B 86 531 UNP P08631 HCK_HUMAN 81 526
SEQADV 3VS6 GLY A 78 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ALA A 79 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 MET A 80 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLY A 81 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 SER A 82 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLY A 83 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ILE A 84 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ARG A 85 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION
SEQADV 3VS6 GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION
SEQADV 3VS6 ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION
SEQADV 3VS6 GLY B 78 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ALA B 79 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 MET B 80 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLY B 81 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 SER B 82 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLY B 83 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ILE B 84 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 ARG B 85 UNP P08631 EXPRESSION TAG
SEQADV 3VS6 GLU B 528 UNP P08631 GLN 523 ENGINEERED MUTATION
SEQADV 3VS6 GLU B 529 UNP P08631 GLN 524 ENGINEERED MUTATION
SEQADV 3VS6 ILE B 530 UNP P08631 GLN 525 ENGINEERED MUTATION
SEQRES 1 A 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA
SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER
SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER
SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS
SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP
SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER
SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN
SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR
SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO
SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR
SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR
SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS
SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS
SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA
SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS
SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR
SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS
SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA
SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS
SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE
SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU
SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU
SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE
SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA
SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE
SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU
SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP
SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE
SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU
SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER
SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG
SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN
SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG
SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE
SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO
SEQRES 1 B 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA
SEQRES 2 B 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER
SEQRES 3 B 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER
SEQRES 4 B 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS
SEQRES 5 B 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP
SEQRES 6 B 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER
SEQRES 7 B 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN
SEQRES 8 B 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR
SEQRES 9 B 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO
SEQRES 10 B 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR
SEQRES 11 B 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR
SEQRES 12 B 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS
SEQRES 13 B 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS
SEQRES 14 B 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA
SEQRES 15 B 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS
SEQRES 16 B 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR
SEQRES 17 B 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS
SEQRES 18 B 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA
SEQRES 19 B 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS
SEQRES 20 B 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE
SEQRES 21 B 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU
SEQRES 22 B 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU
SEQRES 23 B 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE
SEQRES 24 B 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA
SEQRES 25 B 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE
SEQRES 26 B 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU
SEQRES 27 B 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP
SEQRES 28 B 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE
SEQRES 29 B 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU
SEQRES 30 B 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER
SEQRES 31 B 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG
SEQRES 32 B 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN
SEQRES 33 B 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG
SEQRES 34 B 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE
SEQRES 35 B 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO
MODRES 3VS6 PTR A 527 TYR O-PHOSPHOTYROSINE
MODRES 3VS6 PTR B 527 TYR O-PHOSPHOTYROSINE
HET PTR A 527 16
HET PTR B 527 16
HET CA A 601 1
HET CL A 602 1
HET CA A 604 1
HET VSH A 603 29
HET CA B 601 1
HET CA B 604 1
HET CL B 602 1
HET VSH B 603 29
HETNAM PTR O-PHOSPHOTYROSINE
HETNAM CA CALCIUM ION
HETNAM CL CHLORIDE ION
HETNAM VSH TERT-BUTYL {4-[4-AMINO-1-(PROPAN-2-YL)-1H-PYRAZOLO[3,4-
HETNAM 2 VSH D]PYRIMIDIN-3-YL]-2-METHOXYPHENYL}CARBAMATE
HETSYN PTR PHOSPHONOTYROSINE
FORMUL 1 PTR 2(C9 H12 N O6 P)
FORMUL 3 CA 4(CA 2+)
FORMUL 4 CL 2(CL 1-)
FORMUL 6 VSH 2(C20 H26 N6 O3)
FORMUL 11 HOH *298(H2 O)
HELIX 1 1 SER A 143 GLU A 147 5 5
HELIX 2 2 SER A 155 LEU A 164 1 10
HELIX 3 3 THR A 223 LYS A 232 1 10
HELIX 4 4 PRO A 263 GLU A 265 5 3
HELIX 5 5 SER A 303 LYS A 315 1 13
HELIX 6 6 SER A 345 LYS A 351 1 7
HELIX 7 7 SER A 352 LYS A 357 1 6
HELIX 8 8 PRO A 359 ARG A 380 1 22
HELIX 9 9 ARG A 388 ALA A 390 5 3
HELIX 10 10 GLY A 406 ILE A 411 1 6
HELIX 11 11 PRO A 425 THR A 429 5 5
HELIX 12 12 ALA A 430 GLY A 437 1 8
HELIX 13 13 THR A 440 THR A 457 1 18
HELIX 14 14 SER A 467 GLU A 476 1 10
HELIX 15 15 PRO A 488 TRP A 499 1 12
HELIX 16 16 ARG A 502 ARG A 506 5 5
HELIX 17 17 THR A 508 ASP A 518 1 11
HELIX 18 18 ALA A 522 GLN A 526 5 5
HELIX 19 19 SER B 143 GLU B 147 5 5
HELIX 20 20 SER B 155 LEU B 164 1 10
HELIX 21 21 THR B 223 GLY B 234 1 12
HELIX 22 22 PRO B 263 GLU B 265 5 3
HELIX 23 23 SER B 303 LYS B 315 1 13
HELIX 24 24 SER B 345 LYS B 351 1 7
HELIX 25 25 SER B 352 LYS B 357 1 6
HELIX 26 26 PRO B 359 ARG B 380 1 22
HELIX 27 27 ARG B 388 ALA B 390 5 3
HELIX 28 28 PRO B 425 THR B 429 5 5
HELIX 29 29 ALA B 430 ASN B 435 1 6
HELIX 30 30 THR B 440 THR B 457 1 18
HELIX 31 31 SER B 467 GLY B 478 1 12
HELIX 32 32 PRO B 488 TRP B 499 1 12
HELIX 33 33 ARG B 502 ARG B 506 5 5
HELIX 34 34 THR B 508 ASP B 518 1 11
HELIX 35 35 ALA B 522 GLN B 526 5 5
SHEET 1 A 5 GLU A 130 PRO A 134 0
SHEET 2 A 5 TRP A 119 SER A 124 -1 N TRP A 120 O ILE A 133
SHEET 3 A 5 GLN A 109 GLU A 114 -1 N LEU A 113 O LYS A 121
SHEET 4 A 5 ILE A 87 ALA A 90 -1 N VAL A 88 O MET A 110
SHEET 5 A 5 VAL A 138 ARG A 140 -1 O ALA A 139 N VAL A 89
SHEET 1 B 5 PHE A 150 PHE A 151 0
SHEET 2 B 5 PHE A 173 ASP A 177 1 O ILE A 175 N PHE A 151
SHEET 3 B 5 TYR A 185 ASP A 193 -1 O SER A 186 N ARG A 176
SHEET 4 B 5 GLY A 197 THR A 207 -1 O GLY A 197 N ASP A 193
SHEET 5 B 5 PHE A 213 TYR A 214 -1 O TYR A 214 N ARG A 206
SHEET 1 C 5 LEU A 267 ALA A 275 0
SHEET 2 C 5 GLY A 279 TYR A 286 -1 O VAL A 281 N LEU A 273
SHEET 3 C 5 THR A 290 MET A 297 -1 O VAL A 294 N TRP A 282
SHEET 4 C 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295
SHEET 5 C 5 LEU A 325 VAL A 329 -1 N VAL A 329 O TYR A 335
SHEET 1 D 2 ILE A 392 VAL A 394 0
SHEET 2 D 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393
SHEET 1 E 5 GLU B 130 PRO B 134 0
SHEET 2 E 5 TRP B 119 SER B 124 -1 N TRP B 120 O ILE B 133
SHEET 3 E 5 GLN B 109 SER B 116 -1 N LEU B 113 O LYS B 121
SHEET 4 E 5 ILE B 87 ALA B 90 -1 N VAL B 88 O MET B 110
SHEET 5 E 5 VAL B 138 ARG B 140 -1 O ALA B 139 N VAL B 89
SHEET 1 F 4 PHE B 150 PHE B 151 0
SHEET 2 F 4 PHE B 173 ASP B 177 1 O ILE B 175 N PHE B 151
SHEET 3 F 4 TYR B 185 ASP B 193 -1 O SER B 188 N MET B 174
SHEET 4 F 4 GLY B 197 LYS B 204 -1 O TYR B 203 N LEU B 187
SHEET 1 G 5 LEU B 267 ALA B 275 0
SHEET 2 G 5 GLY B 279 TYR B 286 -1 O VAL B 281 N LEU B 273
SHEET 3 G 5 THR B 290 MET B 297 -1 O VAL B 294 N TRP B 282
SHEET 4 G 5 TYR B 335 THR B 338 -1 O THR B 338 N ALA B 293
SHEET 5 G 5 LEU B 325 VAL B 329 -1 N HIS B 326 O ILE B 337
SHEET 1 H 2 ILE B 392 VAL B 394 0
SHEET 2 H 2 CYS B 400 ILE B 402 -1 O LYS B 401 N LEU B 393
LINK C GLN A 526 N PTR A 527 1555 1555 1.33
LINK C PTR A 527 N GLU A 528 1555 1555 1.33
LINK C GLN B 526 N PTR B 527 1555 1555 1.33
LINK C PTR B 527 N GLU B 528 1555 1555 1.33
LINK OE2 GLU A 490 CA CA B 604 1555 1555 3.03
LINK OE1 GLU A 490 CA CA B 604 1555 1555 3.05
LINK O GLU A 524 CA CA A 601 1555 1555 2.82
LINK O PTR A 527 CA CA A 601 1555 1555 2.97
LINK OE2 GLU A 529 CA CA A 601 1555 1555 3.08
LINK CA CA A 601 O HOH A 745 1555 1555 2.98
LINK CA CA A 601 O HOH A 825 1555 1555 3.00
LINK CA CA A 601 OE2 GLU B 490 1555 1555 3.01
LINK CA CA A 601 OE1 GLU B 490 1555 1555 3.02
LINK O GLU B 524 CA CA B 604 1555 1555 3.00
LINK O PTR B 527 CA CA B 604 1555 1555 3.01
LINK CA CA B 604 O HOH B 807 1555 1555 3.04
CISPEP 1 GLU A 332 PRO A 333 0 1.68
CISPEP 2 GLU B 332 PRO B 333 0 -1.19
SITE 1 AC1 6 GLU A 524 PTR A 527 GLU A 529 HOH A 745
SITE 2 AC1 6 HOH A 825 GLU B 490
SITE 1 AC2 3 ARG A 85 ARG A 123 ARG A 128
SITE 1 AC3 14 VAL A 281 ALA A 293 VAL A 294 LYS A 295
SITE 2 AC3 14 ILE A 336 THR A 338 GLU A 339 MET A 341
SITE 3 AC3 14 SER A 345 LEU A 393 ALA A 403 ASP A 404
SITE 4 AC3 14 PHE A 405 HOH A 868
SITE 1 AC4 1 GLU A 505
SITE 1 AC5 4 GLU A 490 GLU B 524 PTR B 527 HOH B 807
SITE 1 AC6 3 ARG B 85 ARG B 123 ARG B 128
SITE 1 AC7 13 VAL B 281 ALA B 293 LYS B 295 ILE B 336
SITE 2 AC7 13 THR B 338 GLU B 339 MET B 341 SER B 345
SITE 3 AC7 13 LEU B 393 ALA B 403 ASP B 404 PHE B 405
SITE 4 AC7 13 HOH B 745
CRYST1 74.613 96.392 182.125 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013402 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010374 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005491 0.00000