HEADER LYASE ACTIVATOR 27-APR-12 3VSM TITLE THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS TITLE 2 ENVELOPE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCCLUSION-DERIVED VIRUS ENVELOPE PROTEIN E66; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-704; COMPND 5 SYNONYM: ODV-E66; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 3 ORGANISM_COMMON: ACMNPV; SOURCE 4 ORGANISM_TAXID: 46015; SOURCE 5 GENE: P79; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/ALPHA TROID, BETA-SANDWICH, LYASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.KAWAGUCHI,N.SUGIURA,K.KIMATA,M.KIMURA,Y.KAKUTA REVDAT 2 20-MAR-24 3VSM 1 REMARK SEQADV REVDAT 1 22-MAY-13 3VSM 0 JRNL AUTH Y.KAWAGUCHI,N.SUGIURA,K.KIMATA,M.KIMURA,Y.KAKUTA JRNL TITL THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, JRNL TITL 2 BACULOVIRUS ENVELOPE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.KAWAGUCHI,N.SUGIURA,M.ONISHI,K.KIMATA,M.KIMURA,Y.KAKUTA REMARK 1 TITL CRYSTALLIZATION AND X-RAY DIFFRACTION ANALYSIS OF REMARK 1 TITL 2 CHONDROITIN LYASE FROM BACULOVIRUS: ENVELOPE PROTEIN REMARK 1 TITL 3 ODV-E66. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 68 190 2012 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 22297996 REMARK 1 DOI 10.1107/S1744309111053164 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5201 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7100 ; 1.073 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 5.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.264 ;24.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 802 ;11.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 785 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4059 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3184 ; 1.300 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5192 ; 2.014 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2033 ; 3.218 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1929 ; 4.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000095449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRI-HCL PH8.0, 100MM NACL, 0.02M REMARK 280 CITRIC ACID, 0.08M BIS-TRIS PROPANE PH8.8, 18 % (W/V) PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.67000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.83500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.67000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 912 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 VAL A 60 REMARK 465 PRO A 61 REMARK 465 ARG A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 HIS A 65 REMARK 465 MET A 66 REMARK 465 ALA A 67 REMARK 465 PHE A 68 REMARK 465 ARG A 69 REMARK 465 GLN A 70 REMARK 465 ASN A 71 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 432 CA CB OG REMARK 480 ASP A 468 CA CB CG OD1 OD2 REMARK 480 ASN A 541 CA CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 60.32 38.25 REMARK 500 VAL A 110 -53.56 64.97 REMARK 500 GLN A 146 27.61 49.55 REMARK 500 ALA A 180 -15.84 78.41 REMARK 500 HIS A 184 -46.00 86.02 REMARK 500 ILE A 187 -66.06 -94.96 REMARK 500 ALA A 234 -138.67 47.91 REMARK 500 ILE A 292 -53.73 79.08 REMARK 500 ASP A 293 21.43 -143.13 REMARK 500 LYS A 371 66.47 75.53 REMARK 500 ASN A 401 16.04 -148.09 REMARK 500 SER A 451 -117.22 -124.83 REMARK 500 THR A 467 -162.90 -124.88 REMARK 500 THR A 467 -159.44 -124.88 REMARK 500 MET A 482 50.59 -108.16 REMARK 500 ASN A 531 47.21 -104.26 REMARK 500 ASN A 542 45.75 -93.73 REMARK 500 ASN A 542 45.75 -82.64 REMARK 500 PRO A 574 -71.97 -71.25 REMARK 500 ASN A 616 -32.01 75.00 REMARK 500 ASN A 643 -125.04 48.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 432 23.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VSN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE EXPERIMENTAL INFO OF UNIPROT (Q00704, OE66_NPVAC) SHOWS REMARK 999 CONFLICT AT THIS POSITION: I -> M DBREF 3VSM A 67 704 UNP Q00704 OE66_NPVAC 67 704 SEQADV 3VSM MET A 46 UNP Q00704 EXPRESSION TAG SEQADV 3VSM GLY A 47 UNP Q00704 EXPRESSION TAG SEQADV 3VSM SER A 48 UNP Q00704 EXPRESSION TAG SEQADV 3VSM SER A 49 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 50 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 51 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 52 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 53 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 54 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 55 UNP Q00704 EXPRESSION TAG SEQADV 3VSM SER A 56 UNP Q00704 EXPRESSION TAG SEQADV 3VSM SER A 57 UNP Q00704 EXPRESSION TAG SEQADV 3VSM GLY A 58 UNP Q00704 EXPRESSION TAG SEQADV 3VSM LEU A 59 UNP Q00704 EXPRESSION TAG SEQADV 3VSM VAL A 60 UNP Q00704 EXPRESSION TAG SEQADV 3VSM PRO A 61 UNP Q00704 EXPRESSION TAG SEQADV 3VSM ARG A 62 UNP Q00704 EXPRESSION TAG SEQADV 3VSM GLY A 63 UNP Q00704 EXPRESSION TAG SEQADV 3VSM SER A 64 UNP Q00704 EXPRESSION TAG SEQADV 3VSM HIS A 65 UNP Q00704 EXPRESSION TAG SEQADV 3VSM MET A 66 UNP Q00704 EXPRESSION TAG SEQADV 3VSM MET A 249 UNP Q00704 ILE 249 SEE REMARK 999 SEQRES 1 A 659 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 659 LEU VAL PRO ARG GLY SER HIS MET ALA PHE ARG GLN ASN SEQRES 3 A 659 ASN ILE GLN GLU LEU GLN ASN PHE GLU ARG TRP PHE LYS SEQRES 4 A 659 ASN ASN LEU SER TYR SER PHE SER GLN LYS ALA GLU LYS SEQRES 5 A 659 VAL VAL ASN PRO ASN ARG ASN TRP ASN ASP ASN THR VAL SEQRES 6 A 659 PHE ASP ASN LEU SER PRO TRP THR SER VAL PRO ASP PHE SEQRES 7 A 659 GLY THR VAL CYS HIS THR LEU ILE GLY TYR CYS VAL ARG SEQRES 8 A 659 TYR ASN ASN THR SER ASP THR LEU TYR GLN ASN PRO GLU SEQRES 9 A 659 LEU ALA TYR ASN LEU ILE ASN GLY LEU ARG ILE ILE CYS SEQRES 10 A 659 SER LYS LEU PRO ASP PRO PRO PRO HIS GLN GLN ALA PRO SEQRES 11 A 659 TRP GLY PRO VAL ALA ASP TRP TYR HIS PHE THR ILE THR SEQRES 12 A 659 MET PRO GLU VAL PHE MET ASN ILE THR ILE VAL LEU ASN SEQRES 13 A 659 GLU THR GLN HIS TYR ASP GLU ALA ALA SER LEU THR ARG SEQRES 14 A 659 TYR TRP LEU GLY LEU TYR LEU PRO THR ALA VAL ASN SER SEQRES 15 A 659 MET GLY TRP HIS ARG THR ALA GLY ASN SER MET ARG MET SEQRES 16 A 659 GLY VAL PRO TYR THR TYR SER GLN MET LEU ARG GLY TYR SEQRES 17 A 659 SER LEU ALA GLN ILE ARG GLN GLU GLN GLY ILE GLN GLU SEQRES 18 A 659 ILE LEU ASN THR ILE ALA PHE PRO TYR VAL THR GLN GLY SEQRES 19 A 659 ASN GLY LEU HIS VAL ASP SER ILE TYR ILE ASP HIS ILE SEQRES 20 A 659 ASP VAL ARG ALA TYR GLY TYR LEU ILE ASN SER TYR PHE SEQRES 21 A 659 THR PHE ALA TYR TYR THR TYR TYR PHE GLY ASP GLU VAL SEQRES 22 A 659 ILE ASN THR VAL GLY LEU THR ARG ALA ILE GLU ASN VAL SEQRES 23 A 659 GLY SER PRO GLU GLY VAL VAL VAL PRO GLY VAL MET SER SEQRES 24 A 659 ARG ASN GLY THR LEU TYR SER ASN VAL ILE GLY ASN PHE SEQRES 25 A 659 ILE THR TYR PRO LEU ALA VAL HIS SER ALA ASP TYR SER SEQRES 26 A 659 LYS VAL LEU THR LYS LEU SER LYS THR TYR TYR GLY SER SEQRES 27 A 659 VAL VAL GLY VAL THR ASN ARG LEU ALA TYR TYR GLU SER SEQRES 28 A 659 ASP PRO THR ASN ASN ILE GLN ALA PRO LEU TRP THR MET SEQRES 29 A 659 ALA ARG ARG ILE TRP ASN ARG ARG GLY ARG ILE ILE ASN SEQRES 30 A 659 TYR ASN ALA ASN THR VAL SER PHE GLU SER GLY ILE ILE SEQRES 31 A 659 LEU GLN SER LEU ASN GLY ILE MET ARG ILE PRO SER GLY SEQRES 32 A 659 THR THR SER THR GLN SER PHE ARG PRO THR ILE GLY GLN SEQRES 33 A 659 THR ALA ILE ALA LYS THR ASP THR ALA GLY ALA ILE LEU SEQRES 34 A 659 VAL TYR ALA LYS PHE ALA GLU MET ASN ASN LEU GLN PHE SEQRES 35 A 659 LYS SER CYS THR LEU PHE TYR ASP HIS GLY MET PHE GLN SEQRES 36 A 659 LEU TYR TYR ASN ILE GLY VAL GLU PRO ASN SER LEU ASN SEQRES 37 A 659 ASN THR ASN GLY ARG VAL ILE VAL LEU SER ARG ASP THR SEQRES 38 A 659 SER VAL ASN THR ASN ASP LEU SER PHE GLU ALA GLN ARG SEQRES 39 A 659 ILE ASN ASN ASN ASN SER SER GLU GLY THR THR PHE ASN SEQRES 40 A 659 GLY VAL VAL CYS HIS ARG VAL PRO ILE THR ASN ILE ASN SEQRES 41 A 659 VAL PRO SER LEU THR VAL ARG SER PRO ASN SER SER VAL SEQRES 42 A 659 GLU LEU VAL GLU GLN ILE ILE SER PHE GLN THR MET TYR SEQRES 43 A 659 THR ALA THR ALA SER ALA CYS TYR LYS LEU ASN VAL GLU SEQRES 44 A 659 GLY HIS SER ASP SER LEU ARG ALA PHE ARG VAL ASN SER SEQRES 45 A 659 ASP GLU ASN ILE TYR VAL ASN VAL GLY ASN GLY VAL LYS SEQRES 46 A 659 ALA LEU PHE ASN TYR PRO TRP VAL MET VAL LYS GLU ASN SEQRES 47 A 659 ASN LYS VAL SER PHE MET SER ALA ASN GLU ASP THR THR SEQRES 48 A 659 ILE PRO PHE SER VAL ILE MET ASN SER PHE THR SER ILE SEQRES 49 A 659 GLY GLU PRO ALA LEU GLN TYR SER PRO SER ASN CYS PHE SEQRES 50 A 659 VAL TYR GLY ASN GLY PHE LYS LEU ASN ASN SER THR PHE SEQRES 51 A 659 ASP LEU GLN PHE ILE PHE GLU ILE VAL HET GOL A 801 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *615(H2 O) HELIX 1 1 ASN A 72 LYS A 94 1 23 HELIX 2 2 SER A 119 ASN A 139 1 21 HELIX 3 3 ASN A 147 LEU A 165 1 19 HELIX 4 4 ILE A 187 LEU A 200 1 14 HELIX 5 5 HIS A 205 LEU A 221 1 17 HELIX 6 6 THR A 233 ARG A 251 1 19 HELIX 7 7 SER A 254 GLN A 260 1 7 HELIX 8 8 GLU A 261 PHE A 273 1 13 HELIX 9 9 ALA A 296 TYR A 304 1 9 HELIX 10 10 THR A 306 GLY A 315 1 10 HELIX 11 11 ASP A 316 ILE A 319 5 4 HELIX 12 12 ASN A 320 ASN A 330 1 11 HELIX 13 13 VAL A 339 MET A 343 5 5 HELIX 14 14 VAL A 353 PHE A 357 5 5 HELIX 15 15 GLN A 403 ALA A 410 1 8 HELIX 16 16 ALA A 480 ASN A 483 5 4 HELIX 17 17 SER A 534 ASN A 542 1 9 HELIX 18 18 SER A 586 THR A 592 1 7 HELIX 19 19 PHE A 659 ILE A 669 1 11 SHEET 1 A 2 TRP A 105 ASN A 106 0 SHEET 2 A 2 VAL A 110 PHE A 111 -1 O VAL A 110 N ASN A 106 SHEET 1 B 2 ASN A 226 SER A 227 0 SHEET 2 B 2 TRP A 230 HIS A 231 -1 O TRP A 230 N SER A 227 SHEET 1 C 4 TYR A 275 VAL A 276 0 SHEET 2 C 4 GLY A 281 HIS A 283 1 O LEU A 282 N VAL A 276 SHEET 3 C 4 TYR A 288 ASP A 290 -1 O ILE A 289 N GLY A 281 SHEET 4 C 4 VAL A 294 ARG A 295 -1 O VAL A 294 N ASP A 290 SHEET 1 D 4 ALA A 363 ALA A 367 0 SHEET 2 D 4 VAL A 372 LEU A 376 -1 O THR A 374 N HIS A 365 SHEET 3 D 4 TYR A 380 VAL A 385 -1 O GLY A 382 N LYS A 375 SHEET 4 D 4 ARG A 412 ASN A 415 -1 O TRP A 414 N TYR A 381 SHEET 1 E 2 TYR A 394 SER A 396 0 SHEET 2 E 2 GLN A 453 PHE A 455 -1 O PHE A 455 N TYR A 394 SHEET 1 F 4 ILE A 435 LEU A 436 0 SHEET 2 F 4 GLY A 517 ASP A 525 -1 O ARG A 518 N LEU A 436 SHEET 3 F 4 VAL A 578 ILE A 585 -1 O VAL A 581 N VAL A 521 SHEET 4 F 4 THR A 570 ARG A 572 -1 N THR A 570 O GLU A 582 SHEET 1 G 7 ILE A 459 LYS A 466 0 SHEET 2 G 7 GLY A 471 LYS A 478 -1 O ALA A 472 N ALA A 465 SHEET 3 G 7 GLN A 486 TYR A 494 -1 O PHE A 493 N GLY A 471 SHEET 4 G 7 GLY A 497 GLY A 506 -1 O LEU A 501 N CYS A 490 SHEET 5 G 7 ALA A 595 VAL A 603 -1 O TYR A 599 N GLN A 500 SHEET 6 G 7 VAL A 554 ARG A 558 -1 N VAL A 555 O ASN A 602 SHEET 7 G 7 THR A 549 PHE A 551 -1 N PHE A 551 O VAL A 554 SHEET 1 H 7 ARG A 611 ARG A 614 0 SHEET 2 H 7 ASN A 620 ASN A 624 -1 O ASN A 624 N ARG A 611 SHEET 3 H 7 VAL A 629 ASN A 634 -1 O PHE A 633 N ILE A 621 SHEET 4 H 7 TRP A 637 GLU A 642 -1 O TRP A 637 N ASN A 634 SHEET 5 H 7 LYS A 645 SER A 650 -1 O LYS A 645 N GLU A 642 SHEET 6 H 7 PHE A 699 ILE A 703 -1 O PHE A 701 N VAL A 646 SHEET 7 H 7 TYR A 676 PRO A 678 -1 N SER A 677 O GLU A 702 SHEET 1 I 3 THR A 656 PRO A 658 0 SHEET 2 I 3 GLY A 687 LEU A 690 -1 O PHE A 688 N ILE A 657 SHEET 3 I 3 CYS A 681 TYR A 684 -1 N PHE A 682 O LYS A 689 CISPEP 1 ASP A 167 PRO A 168 0 3.82 CISPEP 2 ASP A 495 HIS A 496 0 4.92 CISPEP 3 TYR A 635 PRO A 636 0 9.45 SITE 1 AC1 5 ALA A 673 GLN A 675 HOH A1131 HOH A1484 SITE 2 AC1 5 HOH A1498 CRYST1 113.535 113.535 101.505 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008808 0.005085 0.000000 0.00000 SCALE2 0.000000 0.010170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009852 0.00000