HEADER PROTEIN TRANSPORT 15-JUN-12 3VU4 TITLE CRYSTAL STRUCTURE OF KLUYVELOMYCES MARXIANUS HSV2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KMHSV2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 3 ORGANISM_TAXID: 4911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS BETA-PROPELLER FOLD, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.WATANABE,N.N.NODA REVDAT 3 20-MAR-24 3VU4 1 REMARK REVDAT 2 14-AUG-19 3VU4 1 JRNL REVDAT 1 04-JUL-12 3VU4 0 JRNL AUTH Y.WATANABE,T.KOBAYASHI,H.YAMAMOTO,H.HOSHIDA,R.AKADA, JRNL AUTH 2 F.INAGAKI,Y.OHSUMI,N.N.NODA JRNL TITL STRUCTURE-BASED ANALYSES REVEAL DISTINCT BINDING SITES FOR JRNL TITL 2 ATG2 AND PHOSPHOINOSITIDES IN ATG18. JRNL REF J.BIOL.CHEM. V. 287 31681 2012 JRNL REFN ESSN 1083-351X JRNL PMID 22851171 JRNL DOI 10.1074/JBC.M112.397570 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 92997.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 43238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4356 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5878 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 646 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.570 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 48.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3VU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12; 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.97918, 0.97932, REMARK 200 0.96409 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACOH, 1.2M AMMONIUM SULFATE, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.51333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.75667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.63500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.87833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 209.39167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.51333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.75667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.87833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.63500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 209.39167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 PRO A 6 REMARK 465 ILE A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 VAL A 13 REMARK 465 SER A 164 REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 ALA A 167 REMARK 465 THR A 168 REMARK 465 THR A 169 REMARK 465 GLN A 170 REMARK 465 ASP A 171 REMARK 465 GLN A 172 REMARK 465 GLY A 173 REMARK 465 VAL A 174 REMARK 465 GLN A 175 REMARK 465 GLN A 176 REMARK 465 LYS A 177 REMARK 465 ALA A 178 REMARK 465 ILE A 179 REMARK 465 LEU A 180 REMARK 465 GLY A 181 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 6 REMARK 465 ILE B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 VAL B 13 REMARK 465 SER B 163 REMARK 465 SER B 164 REMARK 465 GLY B 165 REMARK 465 SER B 166 REMARK 465 ALA B 167 REMARK 465 THR B 168 REMARK 465 THR B 169 REMARK 465 GLN B 170 REMARK 465 ASP B 171 REMARK 465 GLN B 172 REMARK 465 GLY B 173 REMARK 465 VAL B 174 REMARK 465 GLN B 175 REMARK 465 GLN B 176 REMARK 465 LYS B 177 REMARK 465 ALA B 178 REMARK 465 ILE B 179 REMARK 465 LEU B 180 REMARK 465 GLY B 181 REMARK 465 GLN B 268 REMARK 465 ASP B 269 REMARK 465 ASN B 270 REMARK 465 LYS B 271 REMARK 465 ARG B 272 REMARK 465 HIS B 273 REMARK 465 ALA B 274 REMARK 465 LEU B 275 REMARK 465 LYS B 276 REMARK 465 GLY B 277 REMARK 465 TRP B 278 REMARK 465 ILE B 279 REMARK 465 ASN B 280 REMARK 465 MET B 281 REMARK 465 LYS B 282 REMARK 465 TYR B 283 REMARK 465 PHE B 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 163 OG REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 267 CG OD1 OD2 REMARK 470 GLN B 285 CG CD OE1 NE2 REMARK 470 HIS B 320 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 78.06 -115.02 REMARK 500 ASP A 19 152.54 179.81 REMARK 500 SER A 36 -175.67 -171.25 REMARK 500 MET A 49 145.84 -171.44 REMARK 500 GLN A 51 117.14 -160.38 REMARK 500 MET A 53 140.19 178.00 REMARK 500 HIS A 63 -117.38 51.64 REMARK 500 THR A 72 -126.69 -116.17 REMARK 500 LYS A 86 50.50 38.12 REMARK 500 SER A 90 157.16 176.57 REMARK 500 LYS A 99 -86.61 -100.19 REMARK 500 ARG A 302 -70.44 -102.26 REMARK 500 SER A 310 -169.38 -170.07 REMARK 500 ASN B 15 77.92 -118.53 REMARK 500 THR B 33 -153.19 -119.47 REMARK 500 SER B 36 -177.98 -179.13 REMARK 500 HIS B 63 -124.62 46.39 REMARK 500 THR B 72 -120.34 -113.88 REMARK 500 LYS B 86 80.47 51.90 REMARK 500 GLN B 87 141.70 179.51 REMARK 500 LYS B 99 -80.40 -102.44 REMARK 500 ASN B 142 54.67 33.68 REMARK 500 LEU B 153 4.43 -68.02 REMARK 500 TRP B 257 41.20 70.50 REMARK 500 ASP B 298 -147.72 -117.76 REMARK 500 ARG B 302 -71.93 -84.31 REMARK 500 SER B 310 -162.10 -167.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. RESIDUES (-4)-0 (GPLGS) ARE EXPRESSION TAGS. DBREF 3VU4 A -4 350 PDB 3VU4 3VU4 -4 350 DBREF 3VU4 B -4 350 PDB 3VU4 3VU4 -4 350 SEQRES 1 A 355 GLY PRO LEU GLY SER MET ILE THR ARG ASN PRO ILE VAL SEQRES 2 A 355 PRO GLU ASN HIS VAL SER ASN PRO VAL THR ASP TYR GLU SEQRES 3 A 355 PHE ASN GLN ASP GLN SER CYS LEU ILE LEU SER THR LEU SEQRES 4 A 355 LYS SER PHE GLU ILE TYR ASN VAL HIS PRO VAL ALA HIS SEQRES 5 A 355 ILE MET SER GLN GLU MET ARG HIS LEU SER LYS VAL ARG SEQRES 6 A 355 MET LEU HIS ARG THR ASN TYR VAL ALA PHE VAL THR GLY SEQRES 7 A 355 VAL LYS GLU VAL VAL HIS ILE TRP ASP ASP VAL LYS LYS SEQRES 8 A 355 GLN ASP VAL SER ARG ILE LYS VAL ASP ALA PRO VAL LYS SEQRES 9 A 355 ASP LEU PHE LEU SER ARG GLU PHE ILE VAL VAL SER TYR SEQRES 10 A 355 GLY ASP VAL ILE SER VAL PHE LYS PHE GLY ASN PRO TRP SEQRES 11 A 355 LYS ARG ILE THR ASP ASP ILE ARG PHE GLY GLY VAL CYS SEQRES 12 A 355 GLU PHE SER ASN GLY LEU LEU VAL TYR SER ASN GLU PHE SEQRES 13 A 355 ASN LEU GLY GLN ILE HIS ILE THR LYS LEU GLN SER SER SEQRES 14 A 355 GLY SER ALA THR THR GLN ASP GLN GLY VAL GLN GLN LYS SEQRES 15 A 355 ALA ILE LEU GLY LYS GLY VAL LEU ILE LYS ALA HIS THR SEQRES 16 A 355 ASN PRO ILE LYS MET VAL ARG LEU ASN ARG LYS SER ASP SEQRES 17 A 355 MET VAL ALA THR CYS SER GLN ASP GLY THR ILE ILE ARG SEQRES 18 A 355 VAL PHE LYS THR GLU ASP GLY VAL LEU VAL ARG GLU PHE SEQRES 19 A 355 ARG ARG GLY LEU ASP ARG ALA ASP VAL VAL ASP MET LYS SEQRES 20 A 355 TRP SER THR ASP GLY SER LYS LEU ALA VAL VAL SER ASP SEQRES 21 A 355 LYS TRP THR LEU HIS VAL PHE GLU ILE PHE ASN ASP GLN SEQRES 22 A 355 ASP ASN LYS ARG HIS ALA LEU LYS GLY TRP ILE ASN MET SEQRES 23 A 355 LYS TYR PHE GLN SER GLU TRP SER LEU CYS ASN PHE LYS SEQRES 24 A 355 LEU SER VAL ASP LYS HIS VAL ARG GLY CYS LYS ILE ALA SEQRES 25 A 355 TRP ILE SER GLU SER SER LEU VAL VAL VAL TRP PRO HIS SEQRES 26 A 355 THR ARG MET ILE GLU THR PHE LYS VAL VAL PHE ASP ASP SEQRES 27 A 355 GLU MET GLU ARG TRP LEU ILE GLN MET ASP GLN ARG GLU SEQRES 28 A 355 GLN LEU MET ILE SEQRES 1 B 355 GLY PRO LEU GLY SER MET ILE THR ARG ASN PRO ILE VAL SEQRES 2 B 355 PRO GLU ASN HIS VAL SER ASN PRO VAL THR ASP TYR GLU SEQRES 3 B 355 PHE ASN GLN ASP GLN SER CYS LEU ILE LEU SER THR LEU SEQRES 4 B 355 LYS SER PHE GLU ILE TYR ASN VAL HIS PRO VAL ALA HIS SEQRES 5 B 355 ILE MET SER GLN GLU MET ARG HIS LEU SER LYS VAL ARG SEQRES 6 B 355 MET LEU HIS ARG THR ASN TYR VAL ALA PHE VAL THR GLY SEQRES 7 B 355 VAL LYS GLU VAL VAL HIS ILE TRP ASP ASP VAL LYS LYS SEQRES 8 B 355 GLN ASP VAL SER ARG ILE LYS VAL ASP ALA PRO VAL LYS SEQRES 9 B 355 ASP LEU PHE LEU SER ARG GLU PHE ILE VAL VAL SER TYR SEQRES 10 B 355 GLY ASP VAL ILE SER VAL PHE LYS PHE GLY ASN PRO TRP SEQRES 11 B 355 LYS ARG ILE THR ASP ASP ILE ARG PHE GLY GLY VAL CYS SEQRES 12 B 355 GLU PHE SER ASN GLY LEU LEU VAL TYR SER ASN GLU PHE SEQRES 13 B 355 ASN LEU GLY GLN ILE HIS ILE THR LYS LEU GLN SER SER SEQRES 14 B 355 GLY SER ALA THR THR GLN ASP GLN GLY VAL GLN GLN LYS SEQRES 15 B 355 ALA ILE LEU GLY LYS GLY VAL LEU ILE LYS ALA HIS THR SEQRES 16 B 355 ASN PRO ILE LYS MET VAL ARG LEU ASN ARG LYS SER ASP SEQRES 17 B 355 MET VAL ALA THR CYS SER GLN ASP GLY THR ILE ILE ARG SEQRES 18 B 355 VAL PHE LYS THR GLU ASP GLY VAL LEU VAL ARG GLU PHE SEQRES 19 B 355 ARG ARG GLY LEU ASP ARG ALA ASP VAL VAL ASP MET LYS SEQRES 20 B 355 TRP SER THR ASP GLY SER LYS LEU ALA VAL VAL SER ASP SEQRES 21 B 355 LYS TRP THR LEU HIS VAL PHE GLU ILE PHE ASN ASP GLN SEQRES 22 B 355 ASP ASN LYS ARG HIS ALA LEU LYS GLY TRP ILE ASN MET SEQRES 23 B 355 LYS TYR PHE GLN SER GLU TRP SER LEU CYS ASN PHE LYS SEQRES 24 B 355 LEU SER VAL ASP LYS HIS VAL ARG GLY CYS LYS ILE ALA SEQRES 25 B 355 TRP ILE SER GLU SER SER LEU VAL VAL VAL TRP PRO HIS SEQRES 26 B 355 THR ARG MET ILE GLU THR PHE LYS VAL VAL PHE ASP ASP SEQRES 27 B 355 GLU MET GLU ARG TRP LEU ILE GLN MET ASP GLN ARG GLU SEQRES 28 B 355 GLN LEU MET ILE HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 13(O4 S 2-) FORMUL 16 HOH *138(H2 O) SHEET 1 A 4 ASP A 19 PHE A 22 0 SHEET 2 A 4 CYS A 28 SER A 32 -1 O ILE A 30 N GLU A 21 SHEET 3 A 4 SER A 36 ASN A 41 -1 O GLU A 38 N LEU A 31 SHEET 4 A 4 ALA A 46 GLU A 52 -1 O ALA A 46 N ASN A 41 SHEET 1 B 4 LYS A 58 MET A 61 0 SHEET 2 B 4 TYR A 67 VAL A 71 -1 O ALA A 69 N ARG A 60 SHEET 3 B 4 VAL A 77 ASP A 82 -1 O TRP A 81 N VAL A 68 SHEET 4 B 4 GLN A 87 LYS A 93 -1 O ILE A 92 N VAL A 78 SHEET 1 C 7 VAL A 98 LEU A 103 0 SHEET 2 C 7 PHE A 107 TYR A 112 -1 O SER A 111 N LYS A 99 SHEET 3 C 7 VAL A 115 LYS A 120 -1 O SER A 117 N VAL A 110 SHEET 4 C 7 ILE A 132 SER A 141 -1 O ILE A 132 N ILE A 116 SHEET 5 C 7 LEU A 144 ASN A 149 -1 O SER A 148 N VAL A 137 SHEET 6 C 7 ILE A 156 LYS A 160 -1 O THR A 159 N LEU A 145 SHEET 7 C 7 VAL A 184 ILE A 186 -1 O VAL A 184 N ILE A 158 SHEET 1 D 4 ILE A 193 LEU A 198 0 SHEET 2 D 4 MET A 204 SER A 209 -1 O ALA A 206 N ARG A 197 SHEET 3 D 4 ILE A 214 LYS A 219 -1 O ARG A 216 N THR A 207 SHEET 4 D 4 LEU A 225 ARG A 230 -1 O VAL A 226 N VAL A 217 SHEET 1 E 4 VAL A 238 TRP A 243 0 SHEET 2 E 4 LYS A 249 SER A 254 -1 O VAL A 253 N VAL A 239 SHEET 3 E 4 THR A 258 GLU A 263 -1 O PHE A 262 N LEU A 250 SHEET 4 E 4 CYS A 291 LYS A 294 -1 O PHE A 293 N LEU A 259 SHEET 1 F 2 HIS A 273 ALA A 274 0 SHEET 2 F 2 ILE A 279 ASN A 280 -1 O ILE A 279 N ALA A 274 SHEET 1 G 4 LYS A 305 TRP A 308 0 SHEET 2 G 4 SER A 313 TRP A 318 -1 O VAL A 315 N ALA A 307 SHEET 3 G 4 MET A 323 ASP A 332 -1 O PHE A 327 N LEU A 314 SHEET 4 G 4 ARG A 337 GLN A 347 -1 O LEU A 339 N VAL A 330 SHEET 1 H 4 ASP B 19 PHE B 22 0 SHEET 2 H 4 CYS B 28 SER B 32 -1 O ILE B 30 N GLU B 21 SHEET 3 H 4 SER B 36 ASN B 41 -1 O GLU B 38 N LEU B 31 SHEET 4 H 4 ALA B 46 GLU B 52 -1 O ALA B 46 N ASN B 41 SHEET 1 I 4 LYS B 58 MET B 61 0 SHEET 2 I 4 TYR B 67 VAL B 71 -1 O ALA B 69 N ARG B 60 SHEET 3 I 4 VAL B 77 ASP B 82 -1 O TRP B 81 N VAL B 68 SHEET 4 I 4 GLN B 87 LYS B 93 -1 O ILE B 92 N VAL B 78 SHEET 1 J 4 LEU B 101 LEU B 103 0 SHEET 2 J 4 PHE B 107 TYR B 112 -1 O VAL B 109 N PHE B 102 SHEET 3 J 4 VAL B 115 LYS B 120 -1 O SER B 117 N VAL B 110 SHEET 4 J 4 ARG B 127 ARG B 133 -1 O ILE B 128 N VAL B 118 SHEET 1 K 4 CYS B 138 SER B 141 0 SHEET 2 K 4 LEU B 144 SER B 148 -1 O LEU B 144 N SER B 141 SHEET 3 K 4 GLN B 155 LYS B 160 -1 O THR B 159 N LEU B 145 SHEET 4 K 4 LEU B 185 LYS B 187 -1 O ILE B 186 N ILE B 156 SHEET 1 L 5 ILE B 193 LEU B 198 0 SHEET 2 L 5 MET B 204 SER B 209 -1 O CYS B 208 N LYS B 194 SHEET 3 L 5 ILE B 214 LYS B 219 -1 O ARG B 216 N THR B 207 SHEET 4 L 5 LEU B 225 ARG B 230 -1 O PHE B 229 N ILE B 215 SHEET 5 L 5 GLU B 287 TRP B 288 1 O GLU B 287 N ARG B 230 SHEET 1 M 4 VAL B 238 TRP B 243 0 SHEET 2 M 4 LYS B 249 SER B 254 -1 O ALA B 251 N LYS B 242 SHEET 3 M 4 THR B 258 GLU B 263 -1 O PHE B 262 N LEU B 250 SHEET 4 M 4 CYS B 291 LYS B 294 -1 O PHE B 293 N LEU B 259 SHEET 1 N 4 LYS B 305 TRP B 308 0 SHEET 2 N 4 SER B 313 TRP B 318 -1 O VAL B 317 N LYS B 305 SHEET 3 N 4 MET B 323 ASP B 332 -1 O PHE B 327 N LEU B 314 SHEET 4 N 4 ARG B 337 GLN B 347 -1 O GLU B 346 N ILE B 324 CISPEP 1 HIS A 43 PRO A 44 0 -0.01 CISPEP 2 ASN A 123 PRO A 124 0 -0.35 CISPEP 3 HIS B 43 PRO B 44 0 -0.12 CISPEP 4 ASN B 123 PRO B 124 0 -1.56 SITE 1 AC1 6 LYS A 99 GLY A 113 ASN A 280 LYS A 282 SITE 2 AC1 6 HIS B 63 ARG B 105 SITE 1 AC2 2 LYS A 126 ARG A 127 SITE 1 AC3 6 HIS A 189 THR A 190 ASN A 191 SER A 209 SITE 2 AC3 6 ARG A 216 HOH A 536 SITE 1 AC4 6 LYS A 194 LYS A 271 ARG A 272 HIS A 273 SITE 2 AC4 6 HOH A 524 HOH A 543 SITE 1 AC5 3 ALA A 274 LEU A 275 LYS A 276 SITE 1 AC6 3 GLU A 287 HOH A 581 ARG B 91 SITE 1 AC7 4 HIS A 63 SER A 104 ARG A 105 SO4 A 408 SITE 1 AC8 4 GLN A 24 HIS A 63 ASN A 142 SO4 A 407 SITE 1 AC9 3 LYS A 187 HOH A 508 HIS B 43 SITE 1 BC1 5 GLN B 24 HIS B 63 SER B 104 HOH B 514 SITE 2 BC1 5 HOH B 553 SITE 1 BC2 3 ARG A 227 LYS B 120 HOH B 554 SITE 1 BC3 3 LYS B 126 ARG B 127 HOH B 523 SITE 1 BC4 5 HIS B 189 THR B 190 ASN B 191 SER B 209 SITE 2 BC4 5 ARG B 216 CRYST1 140.270 140.270 251.270 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007129 0.004116 0.000000 0.00000 SCALE2 0.000000 0.008232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003980 0.00000