HEADER DNA BINDING PROTEIN 23-JUN-12 3VU9 TITLE CRYSTAL STRUCTURE OF PSY3-CSM2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATINUM SENSITIVITY PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PSY3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHROMOSOME SEGREGATION IN MEIOSIS PROTEIN 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CSMN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: PSY3, YLR376C, L8039.17; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: CSM2, YIL132C; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DNA REPAIR, RECOMBINATION, MEIOSIS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.TAWARAMOTO,H.SASANUMA,H.HOSAKA,J.P.LAO,E.SANDA,M.SUZUKI, AUTHOR 2 E.YAMASHITA,N.HUNTER,M.SHINOHARA,A.NAKAGAWA,A.SHINOHARA REVDAT 4 20-MAR-24 3VU9 1 REMARK SEQADV REVDAT 3 22-NOV-17 3VU9 1 REMARK REVDAT 2 26-JUN-13 3VU9 1 JRNL REVDAT 1 10-APR-13 3VU9 0 JRNL AUTH H.SASANUMA,M.S.TAWARAMOTO,J.P.LAO,H.HOSAKA,E.SANDA,M.SUZUKI, JRNL AUTH 2 E.YAMASHITA,N.HUNTER,M.SHINOHARA,A.NAKAGAWA,A.SHINOHARA JRNL TITL A NEW PROTEIN COMPLEX PROMOTING THE ASSEMBLY OF RAD51 JRNL TITL 2 FILAMENTS JRNL REF NAT COMMUN V. 4 1676 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23575680 JRNL DOI 10.1038/NCOMMS2678 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 43029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3449 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4663 ; 2.280 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;37.783 ;24.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;16.147 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;24.383 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2547 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 12 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 2.988 ; 2.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2052 ; 4.149 ; 3.691 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1804 ; 3.854 ; 2.837 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0476 -5.3560 43.8041 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.2000 REMARK 3 T33: 0.1720 T12: -0.0153 REMARK 3 T13: 0.0259 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.7164 L22: 1.1466 REMARK 3 L33: 3.2781 L12: -0.6630 REMARK 3 L13: 0.2195 L23: -0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.2688 S13: -0.1962 REMARK 3 S21: 0.0078 S22: 0.0572 S23: 0.3162 REMARK 3 S31: 0.0186 S32: -0.4181 S33: -0.0682 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4786 -2.1907 12.3317 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.0739 REMARK 3 T33: 0.0715 T12: 0.0717 REMARK 3 T13: -0.0500 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.5657 L22: 0.7195 REMARK 3 L33: 3.6033 L12: 0.3655 REMARK 3 L13: 0.2233 L23: -0.7863 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.2123 S13: -0.0318 REMARK 3 S21: -0.1807 S22: -0.0962 S23: 0.0689 REMARK 3 S31: 0.1103 S32: 0.0795 S33: 0.0464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000095507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 30% ETHYLENE GLYCOL(IN REMARK 280 CASE OF SE-MET DERIVATIVE, 25%), 5% POLYETHYLENE GLYCOL, PH 7.0, REMARK 280 HANGING DROP VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.28000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.20150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.28000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.20150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 400 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 PHE A 143 REMARK 465 GLU A 144 REMARK 465 SER A 145 REMARK 465 ASP A 146 REMARK 465 LYS A 147 REMARK 465 ASN A 148 REMARK 465 TYR A 149 REMARK 465 ASP A 194 REMARK 465 LYS A 195 REMARK 465 TRP A 196 REMARK 465 SER A 197 REMARK 465 ILE A 198 REMARK 465 LYS A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 201 REMARK 465 SER A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 204 REMARK 465 THR A 205 REMARK 465 LEU A 240 REMARK 465 GLU A 241 REMARK 465 GLU A 242 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 100 REMARK 465 GLY B 101 REMARK 465 THR B 102 REMARK 465 GLU B 103 REMARK 465 ASP B 104 REMARK 465 ALA B 105 REMARK 465 VAL B 106 REMARK 465 ASN B 179 REMARK 465 ASN B 180 REMARK 465 THR B 181 REMARK 465 ARG B 182 REMARK 465 THR B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 VAL B 186 REMARK 465 ARG B 187 REMARK 465 SER B 188 REMARK 465 LYS B 189 REMARK 465 ARG B 190 REMARK 465 ARG B 191 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 CYS A 63 SG REMARK 470 THR A 64 OG1 CG2 REMARK 470 THR A 65 OG1 CG2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 41 O HOH B 484 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 140 CE2 PHE A 140 CD2 0.121 REMARK 500 PHE B 165 CE1 PHE B 165 CZ 0.125 REMARK 500 TYR B 206 CE1 TYR B 206 CZ 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 140 CB - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 PHE A 140 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP B 76 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -14.63 -43.95 REMARK 500 LYS A 40 35.89 -146.54 REMARK 500 ASP A 50 120.54 72.65 REMARK 500 PHE A 51 -72.60 1.29 REMARK 500 THR A 65 -82.80 -69.38 REMARK 500 ASP A 67 43.90 -89.97 REMARK 500 CYS A 97 36.85 -141.83 REMARK 500 PRO A 208 39.79 -94.29 REMARK 500 LYS A 210 77.27 -105.28 REMARK 500 ASP A 229 -103.75 -111.45 REMARK 500 ALA A 238 30.25 -96.02 REMARK 500 SER B 14 61.10 31.73 REMARK 500 ALA B 98 25.33 -57.63 REMARK 500 SER B 130 -111.11 -117.59 REMARK 500 LYS B 177 29.48 -54.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 50 PHE A 51 145.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 DBREF 3VU9 A 1 242 UNP Q12318 PSY3_YEAST 1 242 DBREF 3VU9 B 1 213 UNP P40465 CSM2_YEAST 1 213 SEQADV 3VU9 GLY A -2 UNP Q12318 EXPRESSION TAG SEQADV 3VU9 SER A -1 UNP Q12318 EXPRESSION TAG SEQADV 3VU9 HIS A 0 UNP Q12318 EXPRESSION TAG SEQRES 1 A 245 GLY SER HIS MET GLU VAL LEU LYS ASN ILE ARG ILE TYR SEQRES 2 A 245 PRO LEU SER ASN PHE ILE THR SER THR LYS ASN TYR ILE SEQRES 3 A 245 ASN LEU PRO ASN GLU LEU ARG ASN LEU ILE SER GLU GLU SEQRES 4 A 245 GLN GLU SER LYS LEU GLY PHE LEU HIS ILE ILE GLU SER SEQRES 5 A 245 ASP PHE LYS PRO SER VAL ALA LEU GLN LYS LEU VAL ASN SEQRES 6 A 245 CYS THR THR GLY ASP GLU LYS ILE LEU ILE ILE ASP ILE SEQRES 7 A 245 VAL SER ILE TRP SER GLN GLN LYS GLN ARG GLN HIS GLY SEQRES 8 A 245 ALA ILE TYR MET ASN SER LEU SER CYS ILE ASN ILE THR SEQRES 9 A 245 GLY LEU ILE VAL PHE LEU GLU LEU LEU TYR ASP SER PRO SEQRES 10 A 245 MET ASP ALA LEU ARG ARG CYS GLN VAL ASP ASN PHE ASN SEQRES 11 A 245 PHE GLN LEU ARG GLY ILE VAL ILE ASP ASN LEU SER PHE SEQRES 12 A 245 LEU ASN PHE GLU SER ASP LYS ASN TYR ASP VAL ILE ASN SEQRES 13 A 245 LEU SER LYS PHE GLU LYS LEU PHE LYS ILE LEU ARG LYS SEQRES 14 A 245 LEU ARG GLU PHE LEU GLY CYS TRP ILE ILE THR LYS SER SEQRES 15 A 245 PHE PRO THR ASP PHE TYR ASN GLY ILE GLU ASN THR LEU SEQRES 16 A 245 VAL ASP LYS TRP SER ILE LYS ARG LYS SER GLY VAL THR SEQRES 17 A 245 LEU TYR PRO THR LYS LEU PRO ASP SER TYR MET LYS GLY SEQRES 18 A 245 MET ASP LEU ILE ILE TYR ARG GLU VAL VAL ASP GLY ARG SEQRES 19 A 245 PRO GLN TYR ARG ARG ILE ALA ALA LEU GLU GLU SEQRES 1 B 213 MET GLU TYR GLU ASP LEU GLU LEU ILE THR ILE TRP PRO SEQRES 2 B 213 SER PRO THR LYS ASN LYS LEU CYS GLN PHE ILE LYS GLN SEQRES 3 B 213 ASN LEU SER LYS GLU HIS VAL VAL THR GLN LEU PHE PHE SEQRES 4 B 213 ILE ASP ALA THR SER SER PHE PRO LEU SER GLN PHE GLN SEQRES 5 B 213 LYS LEU VAL PRO PRO THR LEU PRO GLU ASN VAL ARG ILE SEQRES 6 B 213 TYR GLU ASN ILE ARG ILE ASN THR CYS LEU ASP LEU GLU SEQRES 7 B 213 GLU LEU SER ALA ILE THR VAL LYS LEU LEU GLN ILE LEU SEQRES 8 B 213 SER MET ASN LYS ILE ASN ALA GLN ARG GLY THR GLU ASP SEQRES 9 B 213 ALA VAL THR GLU PRO LEU LYS ILE ILE LEU TYR ILE ASN SEQRES 10 B 213 GLY LEU GLU VAL MET PHE ARG ASN SER GLN PHE LYS SER SEQRES 11 B 213 SER PRO GLN ARG SER HIS GLU LEU LEU ARG ASP THR LEU SEQRES 12 B 213 LEU LYS LEU ARG VAL MET GLY ASN ASP GLU ASN GLU ASN SEQRES 13 B 213 ALA SER ILE ARG THR LEU LEU GLU PHE PRO LYS GLU GLN SEQRES 14 B 213 LEU LEU ASP TYR TYR LEU LYS LYS ASN ASN ASN THR ARG SEQRES 15 B 213 THR SER SER VAL ARG SER LYS ARG ARG ARG ILE LYS ASN SEQRES 16 B 213 GLY ASP SER LEU ALA GLU TYR ILE TRP LYS TYR TYR ALA SEQRES 17 B 213 ASP SER LEU PHE GLU HET EDO B 301 4 HET EDO B 302 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *267(H2 O) HELIX 1 1 PRO A 11 THR A 17 5 7 HELIX 2 2 PRO A 26 ARG A 30 5 5 HELIX 3 3 SER A 34 SER A 39 1 6 HELIX 4 4 SER A 54 ASN A 62 1 9 HELIX 5 5 GLN A 81 ARG A 85 5 5 HELIX 6 6 ASN A 99 SER A 113 1 15 HELIX 7 7 SER A 113 CYS A 121 1 9 HELIX 8 8 LEU A 138 LEU A 141 5 4 HELIX 9 9 VAL A 151 GLY A 172 1 22 HELIX 10 10 PRO A 181 ASN A 186 1 6 HELIX 11 11 GLY A 187 THR A 191 5 5 HELIX 12 12 PRO A 212 LYS A 217 1 6 HELIX 13 13 THR B 16 SER B 29 1 14 HELIX 14 14 PRO B 47 VAL B 55 1 9 HELIX 15 15 LEU B 59 GLU B 61 5 3 HELIX 16 16 ASN B 62 ASN B 68 1 7 HELIX 17 17 ASP B 76 ALA B 98 1 23 HELIX 18 18 GLY B 118 SER B 130 1 13 HELIX 19 19 SER B 131 ASN B 151 1 21 HELIX 20 20 PRO B 166 GLN B 169 5 4 HELIX 21 21 LEU B 170 LYS B 177 1 8 HELIX 22 22 SER B 198 TYR B 207 1 10 SHEET 1 A 7 ALA A 89 MET A 92 0 SHEET 2 A 7 GLU A 68 ASP A 74 1 N ILE A 72 O ILE A 90 SHEET 3 A 7 GLN A 129 ASP A 136 1 O VAL A 134 N ILE A 73 SHEET 4 A 7 TRP A 174 SER A 179 1 O ILE A 176 N ILE A 133 SHEET 5 A 7 PHE A 43 ILE A 47 1 N ILE A 46 O THR A 177 SHEET 6 A 7 LEU A 221 VAL A 227 1 O ARG A 225 N ILE A 47 SHEET 7 A 7 PRO A 232 ARG A 236 -1 O GLN A 233 N GLU A 226 SHEET 1 B 6 ILE B 69 THR B 73 0 SHEET 2 B 6 VAL B 34 ASP B 41 1 N LEU B 37 O ARG B 70 SHEET 3 B 6 LEU B 110 ASN B 117 1 O LYS B 111 N VAL B 34 SHEET 4 B 6 ALA B 157 PHE B 165 1 O LEU B 162 N LEU B 114 SHEET 5 B 6 ILE B 9 PRO B 13 1 N THR B 10 O LEU B 163 SHEET 6 B 6 SER B 210 LEU B 211 1 O SER B 210 N ILE B 11 CISPEP 1 ASP A 136 ASN A 137 0 23.11 SITE 1 AC1 4 SER B 210 LEU B 211 PHE B 212 HOH B 526 SITE 1 AC2 4 TYR B 3 PHE B 23 ASN B 27 HOH B 542 CRYST1 134.560 50.403 76.350 90.00 102.92 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007432 0.000000 0.001705 0.00000 SCALE2 0.000000 0.019840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013438 0.00000