HEADER TRANSPORT PROTEIN/INHIBITOR 27-JUL-12 3VVS TITLE CRYSTAL STRUCTURE OF MATE IN COMPLEX WITH MAD3S COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARCHAEAL-TYPE TRANSPORTER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MACROCYCLIC PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MAD3S; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 STRAIN: JCM 8422; SOURCE 5 GENE: PF0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SELECTED BY THE RAPID SYSTEM PROTOCOL KEYWDS MATE, MULTIDRUG TRANSPORTER, MACROCYCLIC PEPTIDE, TRANSPORT PROTEIN, KEYWDS 2 TRANSPORT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,R.ISHITANI,O.NUREKI REVDAT 4 08-NOV-23 3VVS 1 REMARK LINK REVDAT 3 22-NOV-17 3VVS 1 REMARK REVDAT 2 29-JAN-14 3VVS 1 JRNL REVDAT 1 03-APR-13 3VVS 0 JRNL AUTH Y.TANAKA,C.J.HIPOLITO,A.D.MATURANA,K.ITO,T.KURODA,T.HIGUCHI, JRNL AUTH 2 T.KATOH,H.E.KATO,M.HATTORI,K.KUMAZAKI,T.TSUKAZAKI, JRNL AUTH 3 R.ISHITANI,H.SUGA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR THE DRUG EXTRUSION MECHANISM BY A MATE JRNL TITL 2 MULTIDRUG TRANSPORTER. JRNL REF NATURE V. 496 247 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23535598 JRNL DOI 10.1038/NATURE12014 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0821 - 6.1082 0.99 1412 143 0.2095 0.2066 REMARK 3 2 6.1082 - 4.8504 1.00 1382 141 0.2558 0.2883 REMARK 3 3 4.8504 - 4.2379 0.89 1228 128 0.2135 0.2346 REMARK 3 4 4.2379 - 3.8507 1.00 1370 139 0.1971 0.2448 REMARK 3 5 3.8507 - 3.5748 1.00 1372 133 0.2123 0.2123 REMARK 3 6 3.5748 - 3.3642 1.00 1360 143 0.2062 0.2446 REMARK 3 7 3.3642 - 3.1957 1.00 1353 136 0.2105 0.2540 REMARK 3 8 3.1957 - 3.0567 1.00 1373 138 0.2068 0.2437 REMARK 3 9 3.0567 - 2.9390 1.00 1347 134 0.2078 0.2664 REMARK 3 10 2.9390 - 2.8376 1.00 1363 141 0.2037 0.2694 REMARK 3 11 2.8376 - 2.7489 1.00 1339 141 0.2125 0.2681 REMARK 3 12 2.7489 - 2.6703 1.00 1359 132 0.2066 0.2726 REMARK 3 13 2.6703 - 2.6001 1.00 1326 143 0.2190 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 43.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.660 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.55890 REMARK 3 B22 (A**2) : -3.94750 REMARK 3 B33 (A**2) : -4.61150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.68560 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3584 REMARK 3 ANGLE : 0.648 4795 REMARK 3 CHIRALITY : 0.044 575 REMARK 3 PLANARITY : 0.003 567 REMARK 3 DIHEDRAL : 10.513 1300 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:235) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9096 32.5829 6.3771 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: -0.0033 REMARK 3 T33: 0.1022 T12: 0.0387 REMARK 3 T13: -0.0295 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.4704 L22: 1.8750 REMARK 3 L33: 1.4506 L12: 0.1005 REMARK 3 L13: 0.6161 L23: 0.1870 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0187 S13: 0.0186 REMARK 3 S21: -0.0840 S22: 0.0447 S23: -0.0659 REMARK 3 S31: -0.0515 S32: 0.1807 S33: -0.0291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 236:309) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2039 29.7507 14.2656 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.2404 REMARK 3 T33: 0.1321 T12: -0.0179 REMARK 3 T13: 0.0072 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.8668 L22: 1.2857 REMARK 3 L33: 1.2701 L12: -0.8518 REMARK 3 L13: -0.8063 L23: 0.4733 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: 0.1100 S13: 0.0740 REMARK 3 S21: -0.1181 S22: -0.1427 S23: -0.3215 REMARK 3 S31: -0.2842 S32: 0.2886 S33: -0.0246 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 310:454) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2286 21.3367 20.4578 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.2305 REMARK 3 T33: 0.1121 T12: 0.0322 REMARK 3 T13: -0.0483 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.5082 L22: 1.4077 REMARK 3 L33: 0.6090 L12: 0.3317 REMARK 3 L13: 0.1666 L23: 0.3273 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.1444 S13: -0.1560 REMARK 3 S21: 0.1220 S22: 0.1494 S23: -0.1213 REMARK 3 S31: 0.2014 S32: 0.3705 S33: -0.0585 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -27.7882 27.7289 5.7241 REMARK 3 T TENSOR REMARK 3 T11: 1.1542 T22: 0.5237 REMARK 3 T33: 0.8603 T12: -0.1114 REMARK 3 T13: -0.0286 T23: -0.1655 REMARK 3 L TENSOR REMARK 3 L11: 3.8555 L22: 2.0836 REMARK 3 L33: 5.0720 L12: -1.1338 REMARK 3 L13: -1.4598 L23: -1.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: -0.2713 S13: -0.6274 REMARK 3 S21: -0.2690 S22: 0.7818 S23: -0.1358 REMARK 3 S31: 0.8438 S32: 0.9953 S33: -0.4594 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 100MM HEPES-NAOH, 100MM REMARK 280 NASCN, PH 7.0, LIPDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.54550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.54550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 TYR A 351 REMARK 465 SER A 352 REMARK 465 GLU A 353 REMARK 465 SER A 354 REMARK 465 ALA A 355 REMARK 465 GLN A 356 REMARK 465 VAL A 357 REMARK 465 SER A 455 REMARK 465 ALA A 456 REMARK 465 THR A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 LYS A 460 REMARK 465 ARG A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 7 CD CE NZ REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLU A 91 OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 VAL A 133 CG1 CG2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 220 CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 SER A 233 OG REMARK 470 ARG A 284 CZ NH1 NH2 REMARK 470 LEU A 348 CG CD1 CD2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 THR A 454 OG1 CG2 REMARK 470 VAL B 10 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 5 -168.17 -120.53 REMARK 500 GLU A 131 -122.29 57.10 REMARK 500 VAL A 219 -62.66 -97.97 REMARK 500 PHE A 232 136.62 65.72 REMARK 500 THR A 368 -45.16 -134.57 REMARK 500 GLU A 391 75.03 -104.35 REMARK 500 CYS B 7 -56.21 -126.24 REMARK 500 LEU B 8 -82.27 -111.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 501 REMARK 610 OLC A 502 REMARK 610 OLC A 503 REMARK 610 OLC A 504 REMARK 610 OLC A 505 REMARK 610 OLC A 506 REMARK 610 OLC A 507 REMARK 610 OLC A 508 REMARK 610 OLC A 509 REMARK 610 OLC A 510 REMARK 610 OLC A 511 REMARK 610 OLC A 512 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF MACROCYCLIC PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVN RELATED DB: PDB REMARK 900 RELATED ID: 3VVO RELATED DB: PDB REMARK 900 RELATED ID: 3VVP RELATED DB: PDB REMARK 900 RELATED ID: 3VVQ RELATED DB: PDB REMARK 900 RELATED ID: 3VVR RELATED DB: PDB DBREF 3VVS A 1 461 UNP Q8U2X0 Q8U2X0_PYRFU 1 461 DBREF 3VVS B 0 10 PDB 3VVS 3VVS 0 10 SEQRES 1 A 461 MET SER GLU LYS THR THR LYS GLY VAL GLN LEU LEU ARG SEQRES 2 A 461 GLY ASP PRO LYS LYS ALA ILE VAL ARG LEU SER ILE PRO SEQRES 3 A 461 MET MET ILE GLY MET SER VAL GLN THR LEU TYR ASN LEU SEQRES 4 A 461 ALA ASP GLY ILE TRP VAL SER GLY LEU GLY PRO GLU SER SEQRES 5 A 461 LEU ALA ALA VAL GLY LEU PHE PHE PRO VAL PHE MET GLY SEQRES 6 A 461 ILE ILE ALA LEU ALA ALA GLY LEU GLY VAL GLY THR SER SEQRES 7 A 461 SER ALA ILE ALA ARG ARG ILE GLY ALA ARG ASP LYS GLU SEQRES 8 A 461 GLY ALA ASP ASN VAL ALA VAL HIS SER LEU ILE LEU SER SEQRES 9 A 461 LEU ILE LEU GLY VAL THR ILE THR ILE THR MET LEU PRO SEQRES 10 A 461 ALA ILE ASP SER LEU PHE ARG SER MET GLY ALA LYS GLY SEQRES 11 A 461 GLU ALA VAL GLU LEU ALA ILE GLU TYR ALA ARG VAL LEU SEQRES 12 A 461 LEU ALA GLY ALA PHE ILE ILE VAL PHE ASN ASN VAL GLY SEQRES 13 A 461 ASN GLY ILE LEU ARG GLY GLU GLY ASP ALA ASN ARG ALA SEQRES 14 A 461 MET LEU ALA MET VAL LEU GLY SER GLY LEU ASN ILE VAL SEQRES 15 A 461 LEU ASP PRO ILE PHE ILE TYR THR LEU GLY PHE GLY VAL SEQRES 16 A 461 VAL GLY ALA ALA TYR ALA THR LEU LEU SER MET VAL VAL SEQRES 17 A 461 THR SER LEU PHE ILE ALA TYR TRP LEU PHE VAL LYS ARG SEQRES 18 A 461 ASP THR TYR VAL ASP ILE THR LEU ARG ASP PHE SER PRO SEQRES 19 A 461 SER ARG GLU ILE LEU LYS ASP ILE LEU ARG VAL GLY LEU SEQRES 20 A 461 PRO SER SER LEU SER GLN LEU SER MET SER ILE ALA MET SEQRES 21 A 461 PHE PHE LEU ASN SER VAL ALA ILE THR ALA GLY GLY GLU SEQRES 22 A 461 ASN GLY VAL ALA VAL PHE THR SER ALA TRP ARG ILE THR SEQRES 23 A 461 MET LEU GLY ILE VAL PRO ILE LEU GLY MET ALA ALA ALA SEQRES 24 A 461 THR THR SER VAL THR GLY ALA ALA TYR GLY GLU ARG ASN SEQRES 25 A 461 VAL GLU LYS LEU GLU THR ALA TYR LEU TYR ALA ILE LYS SEQRES 26 A 461 ILE ALA PHE MET ILE GLU LEU ALA VAL VAL ALA PHE ILE SEQRES 27 A 461 MET LEU PHE ALA PRO GLN VAL ALA TYR LEU PHE THR TYR SEQRES 28 A 461 SER GLU SER ALA GLN VAL ILE LYS GLY ASP LEU ILE SER SEQRES 29 A 461 ALA LEU ARG THR LEU PRO VAL PHE LEU VAL LEU THR PRO SEQRES 30 A 461 PHE GLY MET MET THR SER ALA MET PHE GLN GLY ILE GLY SEQRES 31 A 461 GLU GLY GLU LYS SER LEU ILE LEU THR ILE PHE ARG THR SEQRES 32 A 461 LEU VAL MET GLN VAL GLY PHE ALA TYR ILE PHE VAL HIS SEQRES 33 A 461 TYR THR THR LEU GLY LEU ARG GLY VAL TRP ILE GLY ILE SEQRES 34 A 461 VAL ILE GLY ASN MET VAL ALA ALA ILE VAL GLY PHE LEU SEQRES 35 A 461 TRP GLY ARG MET ARG ILE SER ALA LEU LYS LYS THR SER SEQRES 36 A 461 ALA THR GLY GLY LYS ARG SEQRES 1 B 11 ACE DPN VAL TYR SER ALA VAL CYS LEU TYR VAL HET ACE B 0 3 HET DPN B 1 11 HET OLC A 501 13 HET OLC A 502 8 HET OLC A 503 19 HET OLC A 504 18 HET OLC A 505 13 HET OLC A 506 10 HET OLC A 507 19 HET OLC A 508 19 HET OLC A 509 19 HET OLC A 510 16 HET OLC A 511 16 HET OLC A 512 11 HETNAM ACE ACETYL GROUP HETNAM DPN D-PHENYLALANINE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 ACE C2 H4 O FORMUL 2 DPN C9 H11 N O2 FORMUL 3 OLC 12(C21 H40 O4) FORMUL 15 HOH *40(H2 O) HELIX 1 1 THR A 6 ARG A 13 1 8 HELIX 2 2 ASP A 15 GLY A 47 1 33 HELIX 3 3 GLY A 49 ALA A 87 1 39 HELIX 4 4 ASP A 89 LEU A 116 1 28 HELIX 5 5 ALA A 118 MET A 126 1 9 HELIX 6 6 GLU A 131 GLY A 146 1 16 HELIX 7 7 GLY A 146 GLU A 163 1 18 HELIX 8 8 ASP A 165 TYR A 189 1 25 HELIX 9 9 GLY A 194 VAL A 219 1 26 HELIX 10 10 SER A 235 MET A 287 1 53 HELIX 11 11 ILE A 290 GLU A 310 1 21 HELIX 12 12 ASN A 312 PHE A 341 1 30 HELIX 13 13 PHE A 341 PHE A 349 1 9 HELIX 14 14 LYS A 359 ARG A 367 1 9 HELIX 15 15 THR A 368 VAL A 374 5 7 HELIX 16 16 LEU A 375 ILE A 389 1 15 HELIX 17 17 GLU A 391 LEU A 404 1 14 HELIX 18 18 MET A 406 TYR A 417 1 12 HELIX 19 19 LEU A 422 THR A 454 1 33 LINK C ACE B 0 N DPN B 1 1555 1555 1.33 LINK CH3 ACE B 0 SG CYS B 7 1555 1555 1.81 LINK C DPN B 1 N VAL B 2 1555 1555 1.33 CISPEP 1 LYS A 4 THR A 5 0 0.71 CISPEP 2 GLY A 130 GLU A 131 0 -3.05 CISPEP 3 ARG A 230 ASP A 231 0 -0.49 CISPEP 4 ALA A 270 GLY A 271 0 -0.24 CISPEP 5 CYS B 7 LEU B 8 0 -1.93 SITE 1 AC1 3 PRO A 61 GLY A 65 OLC A 506 SITE 1 AC2 3 ILE A 106 THR A 190 PRO A 234 SITE 1 AC3 5 LEU A 101 PHE A 148 ARG A 221 THR A 228 SITE 2 AC3 5 LEU A 229 SITE 1 AC4 8 VAL A 33 LEU A 105 LEU A 116 ARG A 141 SITE 2 AC4 8 ALA A 145 MET A 170 VAL A 174 ILE A 181 SITE 1 AC5 3 LEU A 36 ALA A 145 TYR A 200 SITE 1 AC6 6 GLY A 65 ALA A 68 SER A 250 LEU A 254 SITE 2 AC6 6 SER A 257 OLC A 501 SITE 1 AC7 2 ILE A 29 TYR A 200 SITE 1 AC8 3 ILE A 113 THR A 114 LEU A 179 SITE 1 AC9 6 PRO A 117 ARG A 168 TYR A 215 TRP A 216 SITE 2 AC9 6 LYS A 220 ASP A 222 SITE 1 BC1 10 LYS A 4 THR A 6 GLY A 8 GLY A 164 SITE 2 BC1 10 ASP A 165 ALA A 166 ASN A 167 ASP A 222 SITE 3 BC1 10 THR A 223 TYR A 224 SITE 1 BC2 1 GLU A 393 SITE 1 BC3 18 GLN A 34 TYR A 37 ASN A 38 PHE A 60 SITE 2 BC3 18 PHE A 63 MET A 64 ILE A 67 ALA A 71 SITE 3 BC3 18 ILE A 150 ASN A 153 ASN A 154 ASN A 157 SITE 4 BC3 18 MET A 173 MET A 206 THR A 209 GLN A 253 SITE 5 BC3 18 MET A 256 THR A 280 CRYST1 155.091 59.970 68.525 90.00 91.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006448 0.000000 0.000208 0.00000 SCALE2 0.000000 0.016675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014601 0.00000