HEADER TRANSCRIPTION REGULATOR 30-JUL-12 3VVY TITLE CRYSTAL STRUCUTURE OF THE ETHIDIUM-BOUND FORM OF RAMR (TRANSCRIPTIONAL TITLE 2 REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RAMR, TETR-LIKE TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 588858; SOURCE 4 STRAIN: 14028S; SOURCE 5 GENE: STM0580, STM14_0676; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DUET KEYWDS TETR TRANSCRIPTIONAL REGULATOR FAMILY, HTH-MOTIF, TRANSCRIPTIONAL KEYWDS 2 REGULATOR, DNA BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.SAKURAI,E.NIKAIDO,R.NAKASHIMA,S.YAMASAKI,A.YAMAGUCHI,K.NISHINO REVDAT 4 20-MAR-24 3VVY 1 REMARK SEQADV REVDAT 3 22-NOV-17 3VVY 1 REMARK REVDAT 2 24-JUL-13 3VVY 1 JRNL REVDAT 1 03-JUL-13 3VVY 0 JRNL AUTH S.YAMASAKI,E.NIKAIDO,R.NAKASHIMA,K.SAKURAI,D.FUJIWARA, JRNL AUTH 2 I.FUJII,K.NISHINO JRNL TITL THE CRYSTAL STRUCTURE OF MULTIDRUG-RESISTANCE REGULATOR RAMR JRNL TITL 2 WITH MULTIPLE DRUGS JRNL REF NAT COMMUN V. 4 2078 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23800819 JRNL DOI 10.1038/NCOMMS3078 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 98895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 343 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6215 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8415 ; 2.304 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 777 ; 5.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;35.572 ;22.755 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1110 ;15.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;17.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4722 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3742 ; 1.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5981 ; 2.710 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2473 ; 4.286 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2417 ; 7.006 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3VVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 20MM NAPI, 0.2M REMARK 280 AMMONIUM SULFATE, 75MM NACL, 2MM DTT, 20% PEG 6000, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 192 REMARK 465 GLN A 193 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 192 REMARK 465 GLN B 193 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 3 REMARK 465 PRO C 4 REMARK 465 LYS C 5 REMARK 465 GLU C 192 REMARK 465 GLN C 193 REMARK 465 MET D 0 REMARK 465 VAL D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 GLU D 7 REMARK 465 GLU D 191 REMARK 465 GLU D 192 REMARK 465 GLN D 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 160 CD GLU A 160 OE2 -0.093 REMARK 500 GLU C 146 CB GLU C 146 CG 0.117 REMARK 500 GLU C 146 CD GLU C 146 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 PHE A 127 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 158 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 164 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE B 181 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 102 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 PHE C 127 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE C 127 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG C 136 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU C 158 CB - CG - CD1 ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG D 107 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 27 25.49 -55.76 REMARK 500 GLU C 7 -105.39 58.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVX RELATED DB: PDB REMARK 900 RELATED ID: 3VVZ RELATED DB: PDB REMARK 900 RELATED ID: 3VW0 RELATED DB: PDB REMARK 900 RELATED ID: 3VW1 RELATED DB: PDB REMARK 900 RELATED ID: 3VW2 RELATED DB: PDB DBREF 3VVY A 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VVY B 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VVY C 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 DBREF 3VVY D 2 193 UNP D0ZP76 D0ZP76_SALT1 2 193 SEQADV 3VVY MET A 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY VAL A 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY MET B 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY VAL B 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY MET C 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY VAL C 1 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY MET D 0 UNP D0ZP76 EXPRESSION TAG SEQADV 3VVY VAL D 1 UNP D0ZP76 EXPRESSION TAG SEQRES 1 A 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 A 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 A 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 A 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 A 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 A 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 A 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 A 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 A 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 A 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 A 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 A 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 A 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 A 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 A 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 B 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 B 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 B 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 B 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 B 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 B 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 B 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 B 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 B 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 B 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 B 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 B 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 B 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 B 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 B 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 C 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 C 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 C 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 C 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 C 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 C 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 C 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 C 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 C 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 C 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 C 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 C 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 C 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 C 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 C 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 D 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 D 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 D 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 D 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 D 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 D 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 D 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 D 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 D 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 D 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 D 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 D 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 D 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 D 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 D 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN HET ET A 301 24 HET ET B 301 24 HET ET C 301 24 HET ET D 301 24 HETNAM ET ETHIDIUM FORMUL 5 ET 4(C21 H20 N3 1+) FORMUL 9 HOH *400(H2 O) HELIX 1 1 ASP A 8 GLY A 25 1 18 HELIX 2 2 ILE A 26 ALA A 28 5 3 HELIX 3 3 SER A 29 ALA A 37 1 9 HELIX 4 4 ALA A 40 PHE A 48 1 9 HELIX 5 5 THR A 50 LEU A 74 1 25 HELIX 6 6 ASP A 80 HIS A 99 1 20 HELIX 7 7 HIS A 99 VAL A 111 1 13 HELIX 8 8 THR A 116 ASP A 125 1 10 HELIX 9 9 PHE A 127 VAL A 138 1 12 HELIX 10 10 LEU A 139 SER A 144 5 6 HELIX 11 11 TYR A 147 ASP A 169 1 23 HELIX 12 12 ARG A 172 THR A 189 1 18 HELIX 13 13 LYS B 9 GLY B 25 1 17 HELIX 14 14 SER B 29 ALA B 37 1 9 HELIX 15 15 ALA B 40 PHE B 48 1 9 HELIX 16 16 THR B 50 MET B 72 1 23 HELIX 17 17 ASP B 80 HIS B 99 1 20 HELIX 18 18 HIS B 99 SER B 112 1 14 HELIX 19 19 THR B 116 MET B 126 1 11 HELIX 20 20 PHE B 127 VAL B 138 1 12 HELIX 21 21 LEU B 139 SER B 144 5 6 HELIX 22 22 TYR B 147 ASP B 169 1 23 HELIX 23 23 ARG B 172 THR B 189 1 18 HELIX 24 24 ASP C 8 GLY C 25 1 18 HELIX 25 25 ILE C 26 ALA C 28 5 3 HELIX 26 26 SER C 29 GLY C 38 1 10 HELIX 27 27 ALA C 40 PHE C 48 1 9 HELIX 28 28 THR C 50 LEU C 74 1 25 HELIX 29 29 ASP C 80 HIS C 99 1 20 HELIX 30 30 HIS C 99 VAL C 111 1 13 HELIX 31 31 THR C 116 ASP C 125 1 10 HELIX 32 32 PHE C 127 VAL C 138 1 12 HELIX 33 33 LEU C 139 SER C 144 5 6 HELIX 34 34 TYR C 147 ASP C 169 1 23 HELIX 35 35 ARG C 172 THR C 189 1 18 HELIX 36 36 LYS D 9 GLY D 25 1 17 HELIX 37 37 SER D 29 ALA D 37 1 9 HELIX 38 38 ALA D 40 PHE D 48 1 9 HELIX 39 39 THR D 50 GLU D 73 1 24 HELIX 40 40 ASP D 80 HIS D 99 1 20 HELIX 41 41 HIS D 99 VAL D 111 1 13 HELIX 42 42 THR D 116 MET D 126 1 11 HELIX 43 43 PHE D 127 VAL D 138 1 12 HELIX 44 44 LEU D 139 SER D 144 5 6 HELIX 45 45 TYR D 147 ASP D 169 1 23 HELIX 46 46 ARG D 172 THR D 189 1 18 SITE 1 AC1 8 THR A 85 ILE A 88 TRP A 89 TYR A 92 SITE 2 AC1 8 CYS A 134 ASP A 152 PHE A 155 MET A 184 SITE 1 AC2 7 THR B 85 ILE B 88 TRP B 89 CYS B 134 SITE 2 AC2 7 ASP B 152 PHE B 155 MET B 184 SITE 1 AC3 7 THR C 85 ILE C 88 TRP C 89 CYS C 134 SITE 2 AC3 7 ASP C 152 PHE C 155 MET C 184 SITE 1 AC4 9 THR D 85 ILE D 88 TRP D 89 TYR D 92 SITE 2 AC4 9 CYS D 134 ASP D 152 PHE D 155 MET D 184 SITE 3 AC4 9 THR D 189 CRYST1 44.398 54.282 91.864 103.84 98.28 89.97 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022524 -0.000012 0.003374 0.00000 SCALE2 0.000000 0.018422 0.004587 0.00000 SCALE3 0.000000 0.000000 0.011336 0.00000