data_3VWB # _entry.id 3VWB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VWB pdb_00003vwb 10.2210/pdb3vwb/pdb NDB NA1990 ? ? RCSB RCSB095580 ? ? WWPDB D_1000095580 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-21 2 'Structure model' 1 1 2013-09-04 3 'Structure model' 1 2 2013-12-11 4 'Structure model' 1 3 2013-12-25 5 'Structure model' 1 4 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VWB _pdbx_database_status.recvd_initial_deposition_date 2012-08-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ntz . unspecified PDB 1zx4 . unspecified PDB 3mkz . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, X.P.' 1 'Waltersperger, S.' 2 'Wang, M.T.' 3 'Cui, S.' 4 # _citation.id primary _citation.title 'Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 10529 _citation.page_last 10541 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23985969 _citation.pdbx_database_id_DOI 10.1093/nar/gkt748 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, X.P.' 1 ? primary 'Zou, T.T.' 2 ? primary 'Mu, Z.X.' 3 ? primary 'Qin, B.' 4 ? primary 'Yang, J.' 5 ? primary 'Waltersperger, S.' 6 ? primary 'Wang, M.T.' 7 ? primary 'Cui, S.' 8 ? primary 'Jin, Q.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Virulence regulon transcriptional activator virB' 16254.703 1 ? ? 'UNP residues 129-250' ? 2 polymer syn 'DNA (26-MER)' 8004.859 1 ? ? ? ? 3 polymer syn 'DNA (26-MER)' 8097.236 1 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cell invasion regulator invE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHMAKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASE LNFNDYKILFNYYKGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN ; ;MGSSHHHHHHSSGLVPRGSHMAKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASE LNFNDYKILFNYYKGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN ; A ? 2 polydeoxyribonucleotide no yes ;(DA)(DA)(DA)(DC)(BRU)(DC)(DG)(DT)(DT)(DT)(DC)(DA)(DT)(DC)(DA)(DT)(DG)(DA)(DA) (DA)(BRU)(DC)(DC)(DC)(DA)(DC) ; AAACUCGTTTCATCATGAAAUCCCAC C ? 3 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DG)(DT)(DG)(DG)(DG)(DA)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DA)(DT)(DG)(DA) (DA)(DA)(DC)(DG)(DA)(DG) ; TTTGTGGGATTTCATGATGAAACGAG B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 LYS n 1 24 GLU n 1 25 HIS n 1 26 SER n 1 27 ILE n 1 28 ARG n 1 29 GLU n 1 30 LEU n 1 31 GLY n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 ASN n 1 36 PHE n 1 37 LEU n 1 38 LYS n 1 39 VAL n 1 40 SER n 1 41 GLY n 1 42 MET n 1 43 SER n 1 44 TYR n 1 45 LYS n 1 46 ASP n 1 47 ILE n 1 48 ALA n 1 49 LYS n 1 50 LYS n 1 51 GLU n 1 52 ASN n 1 53 LEU n 1 54 SER n 1 55 ARG n 1 56 ALA n 1 57 LYS n 1 58 VAL n 1 59 THR n 1 60 ARG n 1 61 ALA n 1 62 PHE n 1 63 GLN n 1 64 ALA n 1 65 ALA n 1 66 SER n 1 67 VAL n 1 68 PRO n 1 69 GLN n 1 70 GLU n 1 71 ILE n 1 72 ILE n 1 73 SER n 1 74 LEU n 1 75 PHE n 1 76 PRO n 1 77 ILE n 1 78 ALA n 1 79 SER n 1 80 GLU n 1 81 LEU n 1 82 ASN n 1 83 PHE n 1 84 ASN n 1 85 ASP n 1 86 TYR n 1 87 LYS n 1 88 ILE n 1 89 LEU n 1 90 PHE n 1 91 ASN n 1 92 TYR n 1 93 TYR n 1 94 LYS n 1 95 GLY n 1 96 LEU n 1 97 GLU n 1 98 LYS n 1 99 ALA n 1 100 ASN n 1 101 GLU n 1 102 SER n 1 103 LEU n 1 104 SER n 1 105 SER n 1 106 THR n 1 107 LEU n 1 108 PRO n 1 109 ILE n 1 110 LEU n 1 111 LYS n 1 112 GLU n 1 113 GLU n 1 114 ILE n 1 115 LYS n 1 116 ASP n 1 117 LEU n 1 118 ASP n 1 119 THR n 1 120 ASN n 1 121 LEU n 1 122 PRO n 1 123 PRO n 1 124 ASP n 1 125 ILE n 1 126 TYR n 1 127 LYS n 1 128 LYS n 1 129 GLU n 1 130 ILE n 1 131 LEU n 1 132 ASN n 1 133 ILE n 1 134 ILE n 1 135 LYS n 1 136 LYS n 1 137 SER n 1 138 LYS n 1 139 ASN n 1 140 ARG n 1 141 LYS n 1 142 GLN n 1 143 ASN n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DC n 2 5 BRU n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DC n 2 12 DA n 2 13 DT n 2 14 DC n 2 15 DA n 2 16 DT n 2 17 DG n 2 18 DA n 2 19 DA n 2 20 DA n 2 21 BRU n 2 22 DC n 2 23 DC n 2 24 DC n 2 25 DA n 2 26 DC n 3 1 DT n 3 2 DT n 3 3 DT n 3 4 DG n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DG n 3 9 DA n 3 10 DT n 3 11 DT n 3 12 DT n 3 13 DC n 3 14 DA n 3 15 DT n 3 16 DG n 3 17 DA n 3 18 DT n 3 19 DG n 3 20 DA n 3 21 DA n 3 22 DA n 3 23 DC n 3 24 DG n 3 25 DA n 3 26 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene virB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 301 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri 2a' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 42897 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic DNA with two internal Br-dU labels' 3 1 sample ? ? ? ? ? 'synthetic DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 108 ? ? ? A . n A 1 2 GLY 2 109 ? ? ? A . n A 1 3 SER 3 110 ? ? ? A . n A 1 4 SER 4 111 ? ? ? A . n A 1 5 HIS 5 112 ? ? ? A . n A 1 6 HIS 6 113 ? ? ? A . n A 1 7 HIS 7 114 ? ? ? A . n A 1 8 HIS 8 115 ? ? ? A . n A 1 9 HIS 9 116 ? ? ? A . n A 1 10 HIS 10 117 ? ? ? A . n A 1 11 SER 11 118 ? ? ? A . n A 1 12 SER 12 119 ? ? ? A . n A 1 13 GLY 13 120 ? ? ? A . n A 1 14 LEU 14 121 ? ? ? A . n A 1 15 VAL 15 122 ? ? ? A . n A 1 16 PRO 16 123 ? ? ? A . n A 1 17 ARG 17 124 ? ? ? A . n A 1 18 GLY 18 125 ? ? ? A . n A 1 19 SER 19 126 ? ? ? A . n A 1 20 HIS 20 127 ? ? ? A . n A 1 21 MET 21 128 ? ? ? A . n A 1 22 ALA 22 129 ? ? ? A . n A 1 23 LYS 23 130 ? ? ? A . n A 1 24 GLU 24 131 131 GLU GLU A . n A 1 25 HIS 25 132 132 HIS HIS A . n A 1 26 SER 26 133 133 SER SER A . n A 1 27 ILE 27 134 134 ILE ILE A . n A 1 28 ARG 28 135 135 ARG ARG A . n A 1 29 GLU 29 136 136 GLU GLU A . n A 1 30 LEU 30 137 137 LEU LEU A . n A 1 31 GLY 31 138 138 GLY GLY A . n A 1 32 ILE 32 139 139 ILE ILE A . n A 1 33 GLY 33 140 140 GLY GLY A . n A 1 34 LEU 34 141 141 LEU LEU A . n A 1 35 ASN 35 142 142 ASN ASN A . n A 1 36 PHE 36 143 143 PHE PHE A . n A 1 37 LEU 37 144 144 LEU LEU A . n A 1 38 LYS 38 145 145 LYS LYS A . n A 1 39 VAL 39 146 146 VAL VAL A . n A 1 40 SER 40 147 147 SER SER A . n A 1 41 GLY 41 148 148 GLY GLY A . n A 1 42 MET 42 149 149 MET MET A . n A 1 43 SER 43 150 150 SER SER A . n A 1 44 TYR 44 151 151 TYR TYR A . n A 1 45 LYS 45 152 152 LYS LYS A . n A 1 46 ASP 46 153 153 ASP ASP A . n A 1 47 ILE 47 154 154 ILE ILE A . n A 1 48 ALA 48 155 155 ALA ALA A . n A 1 49 LYS 49 156 156 LYS LYS A . n A 1 50 LYS 50 157 157 LYS LYS A . n A 1 51 GLU 51 158 158 GLU GLU A . n A 1 52 ASN 52 159 159 ASN ASN A . n A 1 53 LEU 53 160 160 LEU LEU A . n A 1 54 SER 54 161 161 SER SER A . n A 1 55 ARG 55 162 162 ARG ARG A . n A 1 56 ALA 56 163 163 ALA ALA A . n A 1 57 LYS 57 164 164 LYS LYS A . n A 1 58 VAL 58 165 165 VAL VAL A . n A 1 59 THR 59 166 166 THR THR A . n A 1 60 ARG 60 167 167 ARG ARG A . n A 1 61 ALA 61 168 168 ALA ALA A . n A 1 62 PHE 62 169 169 PHE PHE A . n A 1 63 GLN 63 170 170 GLN GLN A . n A 1 64 ALA 64 171 171 ALA ALA A . n A 1 65 ALA 65 172 172 ALA ALA A . n A 1 66 SER 66 173 173 SER SER A . n A 1 67 VAL 67 174 174 VAL VAL A . n A 1 68 PRO 68 175 175 PRO PRO A . n A 1 69 GLN 69 176 176 GLN GLN A . n A 1 70 GLU 70 177 177 GLU GLU A . n A 1 71 ILE 71 178 178 ILE ILE A . n A 1 72 ILE 72 179 179 ILE ILE A . n A 1 73 SER 73 180 180 SER SER A . n A 1 74 LEU 74 181 181 LEU LEU A . n A 1 75 PHE 75 182 182 PHE PHE A . n A 1 76 PRO 76 183 183 PRO PRO A . n A 1 77 ILE 77 184 184 ILE ILE A . n A 1 78 ALA 78 185 185 ALA ALA A . n A 1 79 SER 79 186 186 SER SER A . n A 1 80 GLU 80 187 187 GLU GLU A . n A 1 81 LEU 81 188 188 LEU LEU A . n A 1 82 ASN 82 189 189 ASN ASN A . n A 1 83 PHE 83 190 190 PHE PHE A . n A 1 84 ASN 84 191 191 ASN ASN A . n A 1 85 ASP 85 192 192 ASP ASP A . n A 1 86 TYR 86 193 193 TYR TYR A . n A 1 87 LYS 87 194 194 LYS LYS A . n A 1 88 ILE 88 195 195 ILE ILE A . n A 1 89 LEU 89 196 196 LEU LEU A . n A 1 90 PHE 90 197 197 PHE PHE A . n A 1 91 ASN 91 198 198 ASN ASN A . n A 1 92 TYR 92 199 199 TYR TYR A . n A 1 93 TYR 93 200 200 TYR TYR A . n A 1 94 LYS 94 201 201 LYS LYS A . n A 1 95 GLY 95 202 202 GLY GLY A . n A 1 96 LEU 96 203 203 LEU LEU A . n A 1 97 GLU 97 204 204 GLU GLU A . n A 1 98 LYS 98 205 205 LYS LYS A . n A 1 99 ALA 99 206 206 ALA ALA A . n A 1 100 ASN 100 207 207 ASN ASN A . n A 1 101 GLU 101 208 208 GLU GLU A . n A 1 102 SER 102 209 209 SER SER A . n A 1 103 LEU 103 210 210 LEU LEU A . n A 1 104 SER 104 211 211 SER SER A . n A 1 105 SER 105 212 212 SER SER A . n A 1 106 THR 106 213 213 THR THR A . n A 1 107 LEU 107 214 214 LEU LEU A . n A 1 108 PRO 108 215 215 PRO PRO A . n A 1 109 ILE 109 216 216 ILE ILE A . n A 1 110 LEU 110 217 217 LEU LEU A . n A 1 111 LYS 111 218 218 LYS LYS A . n A 1 112 GLU 112 219 219 GLU GLU A . n A 1 113 GLU 113 220 220 GLU GLU A . n A 1 114 ILE 114 221 221 ILE ILE A . n A 1 115 LYS 115 222 222 LYS LYS A . n A 1 116 ASP 116 223 223 ASP ASP A . n A 1 117 LEU 117 224 224 LEU LEU A . n A 1 118 ASP 118 225 225 ASP ASP A . n A 1 119 THR 119 226 226 THR THR A . n A 1 120 ASN 120 227 227 ASN ASN A . n A 1 121 LEU 121 228 228 LEU LEU A . n A 1 122 PRO 122 229 229 PRO PRO A . n A 1 123 PRO 123 230 230 PRO PRO A . n A 1 124 ASP 124 231 231 ASP ASP A . n A 1 125 ILE 125 232 232 ILE ILE A . n A 1 126 TYR 126 233 233 TYR TYR A . n A 1 127 LYS 127 234 234 LYS LYS A . n A 1 128 LYS 128 235 235 LYS LYS A . n A 1 129 GLU 129 236 236 GLU GLU A . n A 1 130 ILE 130 237 237 ILE ILE A . n A 1 131 LEU 131 238 238 LEU LEU A . n A 1 132 ASN 132 239 239 ASN ASN A . n A 1 133 ILE 133 240 240 ILE ILE A . n A 1 134 ILE 134 241 241 ILE ILE A . n A 1 135 LYS 135 242 242 LYS LYS A . n A 1 136 LYS 136 243 243 LYS LYS A . n A 1 137 SER 137 244 244 SER SER A . n A 1 138 LYS 138 245 245 LYS LYS A . n A 1 139 ASN 139 246 246 ASN ASN A . n A 1 140 ARG 140 247 ? ? ? A . n A 1 141 LYS 141 248 ? ? ? A . n A 1 142 GLN 142 249 ? ? ? A . n A 1 143 ASN 143 250 ? ? ? A . n B 2 1 DA 1 1 1 DA DA C . n B 2 2 DA 2 2 2 DA DA C . n B 2 3 DA 3 3 3 DA DA C . n B 2 4 DC 4 4 4 DC DC C . n B 2 5 BRU 5 5 5 BRU BRU C . n B 2 6 DC 6 6 6 DC DC C . n B 2 7 DG 7 7 7 DG DG C . n B 2 8 DT 8 8 8 DT DT C . n B 2 9 DT 9 9 9 DT DT C . n B 2 10 DT 10 10 10 DT DT C . n B 2 11 DC 11 11 11 DC DC C . n B 2 12 DA 12 12 12 DA DA C . n B 2 13 DT 13 13 13 DT DT C . n B 2 14 DC 14 14 14 DC DC C . n B 2 15 DA 15 15 15 DA DA C . n B 2 16 DT 16 16 16 DT DT C . n B 2 17 DG 17 17 17 DG DG C . n B 2 18 DA 18 18 18 DA DA C . n B 2 19 DA 19 19 19 DA DA C . n B 2 20 DA 20 20 20 DA DA C . n B 2 21 BRU 21 21 21 BRU BRU C . n B 2 22 DC 22 22 22 DC DC C . n B 2 23 DC 23 23 23 DC DC C . n B 2 24 DC 24 24 24 DC DC C . n B 2 25 DA 25 25 25 DA DA C . n B 2 26 DC 26 26 26 DC DC C . n C 3 1 DT 1 1 1 DT DT B . n C 3 2 DT 2 2 2 DT DT B . n C 3 3 DT 3 3 3 DT DT B . n C 3 4 DG 4 4 4 DG DG B . n C 3 5 DT 5 5 5 DT DT B . n C 3 6 DG 6 6 6 DG DG B . n C 3 7 DG 7 7 7 DG DG B . n C 3 8 DG 8 8 8 DG DG B . n C 3 9 DA 9 9 9 DA DA B . n C 3 10 DT 10 10 10 DT DT B . n C 3 11 DT 11 11 11 DT DT B . n C 3 12 DT 12 12 12 DT DT B . n C 3 13 DC 13 13 13 DC DC B . n C 3 14 DA 14 14 14 DA DA B . n C 3 15 DT 15 15 15 DT DT B . n C 3 16 DG 16 16 16 DG DG B . n C 3 17 DA 17 17 17 DA DA B . n C 3 18 DT 18 18 18 DT DT B . n C 3 19 DG 19 19 19 DG DG B . n C 3 20 DA 20 20 20 DA DA B . n C 3 21 DA 21 21 21 DA DA B . n C 3 22 DA 22 22 22 DA DA B . n C 3 23 DC 23 23 23 DC DC B . n C 3 24 DG 24 24 24 DG DG B . n C 3 25 DA 25 25 25 DA DA B . n C 3 26 DG 26 26 26 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 8 HOH HOH A . D 4 HOH 5 305 9 HOH HOH A . D 4 HOH 6 306 10 HOH HOH A . D 4 HOH 7 307 11 HOH HOH A . D 4 HOH 8 308 12 HOH HOH A . D 4 HOH 9 309 16 HOH HOH A . D 4 HOH 10 310 18 HOH HOH A . D 4 HOH 11 311 19 HOH HOH A . D 4 HOH 12 312 22 HOH HOH A . D 4 HOH 13 313 24 HOH HOH A . D 4 HOH 14 314 25 HOH HOH A . D 4 HOH 15 315 26 HOH HOH A . D 4 HOH 16 316 31 HOH HOH A . D 4 HOH 17 317 32 HOH HOH A . D 4 HOH 18 318 35 HOH HOH A . D 4 HOH 19 319 38 HOH HOH A . D 4 HOH 20 320 39 HOH HOH A . D 4 HOH 21 321 40 HOH HOH A . D 4 HOH 22 322 42 HOH HOH A . D 4 HOH 23 323 44 HOH HOH A . D 4 HOH 24 324 46 HOH HOH A . D 4 HOH 25 325 47 HOH HOH A . D 4 HOH 26 326 49 HOH HOH A . D 4 HOH 27 327 51 HOH HOH A . D 4 HOH 28 328 52 HOH HOH A . D 4 HOH 29 329 53 HOH HOH A . D 4 HOH 30 330 54 HOH HOH A . D 4 HOH 31 331 55 HOH HOH A . D 4 HOH 32 332 60 HOH HOH A . D 4 HOH 33 333 61 HOH HOH A . D 4 HOH 34 334 62 HOH HOH A . E 4 HOH 1 101 5 HOH HOH C . E 4 HOH 2 102 7 HOH HOH C . E 4 HOH 3 103 13 HOH HOH C . E 4 HOH 4 104 15 HOH HOH C . E 4 HOH 5 105 23 HOH HOH C . E 4 HOH 6 106 27 HOH HOH C . E 4 HOH 7 107 28 HOH HOH C . E 4 HOH 8 108 30 HOH HOH C . E 4 HOH 9 109 34 HOH HOH C . E 4 HOH 10 110 36 HOH HOH C . E 4 HOH 11 111 37 HOH HOH C . E 4 HOH 12 112 41 HOH HOH C . E 4 HOH 13 113 43 HOH HOH C . E 4 HOH 14 114 56 HOH HOH C . E 4 HOH 15 115 57 HOH HOH C . F 4 HOH 1 101 4 HOH HOH B . F 4 HOH 2 102 6 HOH HOH B . F 4 HOH 3 103 14 HOH HOH B . F 4 HOH 4 104 17 HOH HOH B . F 4 HOH 5 105 20 HOH HOH B . F 4 HOH 6 106 21 HOH HOH B . F 4 HOH 7 107 29 HOH HOH B . F 4 HOH 8 108 33 HOH HOH B . F 4 HOH 9 109 45 HOH HOH B . F 4 HOH 10 110 48 HOH HOH B . F 4 HOH 11 111 50 HOH HOH B . F 4 HOH 12 112 58 HOH HOH B . F 4 HOH 13 113 59 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal RemDAq 'data collection' . ? 1 SHELXD phasing . ? 2 SHELXE 'model building' . ? 3 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 4 XDS 'data reduction' package ? 5 XDS 'data scaling' package ? 6 # _cell.entry_id 3VWB _cell.length_a 57.321 _cell.length_b 163.051 _cell.length_c 39.569 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VWB _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VWB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.95 _exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1M MgCl2, 0.1M Sodium Acetate, 22% PEG400, 3%(v/v) dimethyl sulfoxide, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2011-08-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bartels Monochromator Crystal Type Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97920 # _reflns.entry_id 3VWB _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F -3.0 _reflns.d_resolution_low 46.891 _reflns.d_resolution_high 2.416 _reflns.number_obs 27467 _reflns.number_all 27467 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.56 _reflns.B_iso_Wilson_estimate 46.5 _reflns.pdbx_redundancy 7.77 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.42 _reflns_shell.d_res_low 2.56 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.768 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.43 _reflns_shell.pdbx_redundancy 7.54 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4363 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VWB _refine.ls_number_reflns_obs 27362 _refine.ls_number_reflns_all 27467 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.891 _refine.ls_d_res_high 2.416 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.2371 _refine.ls_R_factor_all 0.2371 _refine.ls_R_factor_R_work 0.2353 _refine.ls_R_factor_R_free 0.2710 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.96 _refine.ls_number_reflns_R_free 1358 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 68.9097 _refine.aniso_B[1][1] 14.0000 _refine.aniso_B[2][2] -7.5335 _refine.aniso_B[3][3] -6.4665 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL.' _refine.solvent_model_param_ksol 0.301 _refine.solvent_model_param_bsol 31.730 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.41 _refine.overall_FOM_work_R_set 0.7987 _refine.B_iso_max 190.730 _refine.B_iso_min 13.810 _refine.pdbx_overall_phase_error 26.8300 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 931 _refine_hist.pdbx_number_atoms_nucleic_acid 1060 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 2053 _refine_hist.d_res_high 2.416 _refine_hist.d_res_low 46.891 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 2144 0.004 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3103 0.979 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 351 0.046 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 214 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 868 27.192 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.4161 2.5025 10 98.0000 2588 . 0.3641 0.3900 . 133 . 2721 . 'X-RAY DIFFRACTION' . 2.5025 2.6027 10 100.0000 2605 . 0.3179 0.3614 . 135 . 2740 . 'X-RAY DIFFRACTION' . 2.6027 2.7211 10 100.0000 2583 . 0.2906 0.2738 . 136 . 2719 . 'X-RAY DIFFRACTION' . 2.7211 2.8646 10 100.0000 2638 . 0.2618 0.3229 . 138 . 2776 . 'X-RAY DIFFRACTION' . 2.8646 3.0440 10 100.0000 2619 . 0.2704 0.3344 . 136 . 2755 . 'X-RAY DIFFRACTION' . 3.0440 3.2790 10 99.0000 2556 . 0.2418 0.2598 . 134 . 2690 . 'X-RAY DIFFRACTION' . 3.2790 3.6088 10 100.0000 2594 . 0.2439 0.2875 . 140 . 2734 . 'X-RAY DIFFRACTION' . 3.6088 4.1308 10 100.0000 2597 . 0.2245 0.2658 . 137 . 2734 . 'X-RAY DIFFRACTION' . 4.1308 5.2033 10 100.0000 2613 . 0.2086 0.2460 . 131 . 2744 . 'X-RAY DIFFRACTION' . 5.2033 46.8995 10 100.0000 2611 . 0.1921 0.2240 . 138 . 2749 . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 3VWB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VWB _struct.title ;Crystal structure of VirB core domain (Se-Met derivative) complexed with the cis-acting site (5-BRU modifications) upstream icsb promoter ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VWB _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;HTH DNA binding motif, dsDNA, Palindromic DNA sequence, ParB like, HTH DNA-binding motif, transcriptional activator, sequence specific dsDNA binding, TRANSCRIPTION-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VIRB_SHIFL P0A247 1 ;AKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANE SLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN ; 129 ? 2 PDB 3VWB 3VWB 2 ? ? ? 3 PDB 3VWB 3VWB 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VWB A 22 ? 143 ? P0A247 129 ? 250 ? 129 250 2 2 3VWB C 1 ? 26 ? 3VWB 1 ? 26 ? 1 26 3 3 3VWB B 1 ? 26 ? 3VWB 1 ? 26 ? 1 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VWB MET A 1 ? UNP P0A247 ? ? 'expression tag' 108 1 1 3VWB GLY A 2 ? UNP P0A247 ? ? 'expression tag' 109 2 1 3VWB SER A 3 ? UNP P0A247 ? ? 'expression tag' 110 3 1 3VWB SER A 4 ? UNP P0A247 ? ? 'expression tag' 111 4 1 3VWB HIS A 5 ? UNP P0A247 ? ? 'expression tag' 112 5 1 3VWB HIS A 6 ? UNP P0A247 ? ? 'expression tag' 113 6 1 3VWB HIS A 7 ? UNP P0A247 ? ? 'expression tag' 114 7 1 3VWB HIS A 8 ? UNP P0A247 ? ? 'expression tag' 115 8 1 3VWB HIS A 9 ? UNP P0A247 ? ? 'expression tag' 116 9 1 3VWB HIS A 10 ? UNP P0A247 ? ? 'expression tag' 117 10 1 3VWB SER A 11 ? UNP P0A247 ? ? 'expression tag' 118 11 1 3VWB SER A 12 ? UNP P0A247 ? ? 'expression tag' 119 12 1 3VWB GLY A 13 ? UNP P0A247 ? ? 'expression tag' 120 13 1 3VWB LEU A 14 ? UNP P0A247 ? ? 'expression tag' 121 14 1 3VWB VAL A 15 ? UNP P0A247 ? ? 'expression tag' 122 15 1 3VWB PRO A 16 ? UNP P0A247 ? ? 'expression tag' 123 16 1 3VWB ARG A 17 ? UNP P0A247 ? ? 'expression tag' 124 17 1 3VWB GLY A 18 ? UNP P0A247 ? ? 'expression tag' 125 18 1 3VWB SER A 19 ? UNP P0A247 ? ? 'expression tag' 126 19 1 3VWB HIS A 20 ? UNP P0A247 ? ? 'expression tag' 127 20 1 3VWB MET A 21 ? UNP P0A247 ? ? 'expression tag' 128 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4670 ? 1 MORE -14 ? 1 'SSA (A^2)' 15330 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? LEU A 34 ? SER A 133 LEU A 141 1 ? 9 HELX_P HELX_P2 2 LEU A 34 ? VAL A 39 ? LEU A 141 VAL A 146 1 ? 6 HELX_P HELX_P3 3 SER A 43 ? ASN A 52 ? SER A 150 ASN A 159 1 ? 10 HELX_P HELX_P4 4 SER A 54 ? SER A 66 ? SER A 161 SER A 173 1 ? 13 HELX_P HELX_P5 5 PRO A 68 ? LEU A 74 ? PRO A 175 LEU A 181 1 ? 7 HELX_P HELX_P6 6 ILE A 77 ? LEU A 81 ? ILE A 184 LEU A 188 5 ? 5 HELX_P HELX_P7 7 ASN A 82 ? ALA A 99 ? ASN A 189 ALA A 206 1 ? 18 HELX_P HELX_P8 8 THR A 106 ? ASP A 116 ? THR A 213 ASP A 223 1 ? 11 HELX_P HELX_P9 9 TYR A 126 ? ASN A 139 ? TYR A 233 ASN A 246 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? C DC 4 C BRU 5 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale2 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DC 6 P ? ? C BRU 5 C DC 6 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale3 covale both ? B DA 20 "O3'" ? ? ? 1_555 B BRU 21 P ? ? C DA 20 C BRU 21 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B BRU 21 "O3'" ? ? ? 1_555 B DC 22 P ? ? C BRU 21 C DC 22 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DG 26 O6 ? ? C DA 3 B DG 26 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 26 N1 ? ? C DC 4 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 26 O6 ? ? C DC 4 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 26 N2 ? ? C DC 4 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B BRU 5 N3 ? ? ? 1_555 C DA 25 N1 ? ? C BRU 5 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B BRU 5 O4 ? ? ? 1_555 C DA 25 N6 ? ? C BRU 5 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 24 N2 ? ? C DC 6 B DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 23 N3 ? ? C DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 23 O2 ? ? C DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 23 N4 ? ? C DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 21 N1 ? ? C DT 9 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 21 N6 ? ? C DT 9 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 20 N1 ? ? C DT 10 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 20 N6 ? ? C DT 10 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 19 N1 ? ? C DC 11 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 19 O6 ? ? C DC 11 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 19 N2 ? ? C DC 11 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 18 N3 ? ? C DA 12 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 18 O4 ? ? C DA 12 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 17 N1 ? ? C DT 13 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 17 N6 ? ? C DT 13 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 16 N1 ? ? C DC 14 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 16 O6 ? ? C DC 14 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 16 N2 ? ? C DC 14 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 15 N3 ? ? C DA 15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 15 O4 ? ? C DA 15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 16 N3 ? ? ? 1_555 C DA 14 N1 ? ? C DT 16 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 16 O4 ? ? ? 1_555 C DA 14 N6 ? ? C DT 16 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 17 N1 ? ? ? 1_555 C DC 13 N3 ? ? C DG 17 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 17 N2 ? ? ? 1_555 C DC 13 O2 ? ? C DG 17 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 17 O6 ? ? ? 1_555 C DC 13 N4 ? ? C DG 17 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 18 N1 ? ? ? 1_555 C DT 12 N3 ? ? C DA 18 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DA 18 N6 ? ? ? 1_555 C DT 12 O4 ? ? C DA 18 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 19 N1 ? ? ? 1_555 C DT 11 N3 ? ? C DA 19 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 19 N6 ? ? ? 1_555 C DT 11 O4 ? ? C DA 19 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 20 N1 ? ? ? 1_555 C DT 10 N3 ? ? C DA 20 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DA 20 N6 ? ? ? 1_555 C DT 10 O4 ? ? C DA 20 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B BRU 21 N3 ? ? ? 1_555 C DA 9 N1 ? ? C BRU 21 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B BRU 21 O4 ? ? ? 1_555 C DA 9 N6 ? ? C BRU 21 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 22 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 22 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 22 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 22 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 22 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 22 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 23 N3 ? ? ? 1_555 C DG 7 N1 ? ? C DC 23 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 23 N4 ? ? ? 1_555 C DG 7 O6 ? ? C DC 23 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DC 23 O2 ? ? ? 1_555 C DG 7 N2 ? ? C DC 23 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DC 24 N3 ? ? ? 1_555 C DG 6 N1 ? ? C DC 24 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DC 24 N4 ? ? ? 1_555 C DG 6 O6 ? ? C DC 24 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DC 24 O2 ? ? ? 1_555 C DG 6 N2 ? ? C DC 24 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DA 25 N1 ? ? ? 1_555 C DT 5 N3 ? ? C DA 25 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DA 25 N6 ? ? ? 1_555 C DT 5 O4 ? ? C DA 25 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DC 26 N3 ? ? ? 1_555 C DG 4 N1 ? ? C DC 26 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 26 N4 ? ? ? 1_555 C DG 4 O6 ? ? C DC 26 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 26 O2 ? ? ? 1_555 C DG 4 N2 ? ? C DC 26 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 119 A . ? THR 226 A ASN 120 A ? ASN 227 A 1 0.65 2 ILE 125 A . ? ILE 232 A TYR 126 A ? TYR 233 A 1 -0.25 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H2''" C BRU 21 ? ? "O5'" C DC 22 ? ? 1.59 2 1 O A LYS 218 ? ? O A HOH 318 ? ? 1.97 3 1 O B HOH 111 ? ? O B HOH 113 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DT 9 ? ? "C2'" C DT 9 ? ? "C1'" C DT 9 ? ? 96.49 102.40 -5.91 0.80 N 2 1 "O4'" C DT 9 ? ? "C1'" C DT 9 ? ? N1 C DT 9 ? ? 110.83 108.30 2.53 0.30 N 3 1 "O4'" C DC 24 ? ? "C1'" C DC 24 ? ? N1 C DC 24 ? ? 110.20 108.30 1.90 0.30 N 4 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.31 108.30 2.01 0.30 N 5 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 111.49 108.30 3.19 0.30 N 6 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 97.46 102.40 -4.94 0.80 N 7 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.60 108.30 3.30 0.30 N 8 1 "C3'" B DG 19 ? ? "C2'" B DG 19 ? ? "C1'" B DG 19 ? ? 97.04 102.40 -5.36 0.80 N 9 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 110.33 108.30 2.03 0.30 N 10 1 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 112.13 108.30 3.83 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 233 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 74.57 _pdbx_validate_torsion.psi -96.80 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B BRU 5 C BRU 5 ? DU ? 2 B BRU 21 C BRU 21 ? DU ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 58.508 62.202 -10.981 0.9949 1.1345 1.0663 -0.0889 0.2026 0.0564 0.0208 0.0203 0.0019 -0.0158 0.0054 -0.0074 0.0031 -0.0218 -0.0000 -0.0072 -0.0100 -0.0101 -0.0148 -0.0221 0.0034 'X-RAY DIFFRACTION' 2 ? refined 56.0691 56.6188 -14.2223 0.1660 0.4132 0.3229 0.0088 0.0347 -0.0064 0.0071 0.0035 0.0040 -0.0015 -0.0055 0.0009 0.0578 -0.0325 0.0032 0.0346 -0.0589 -0.0672 -0.0338 -0.0378 0.0170 'X-RAY DIFFRACTION' 3 ? refined 60.5548 44.2825 -14.1235 0.2086 0.4770 0.2680 0.0599 0.0627 -0.0687 0.0408 0.0231 0.0172 -0.0220 0.0048 -0.0158 0.0096 0.0374 0.0041 0.0124 -0.0351 0.0698 -0.0301 0.0104 0.1057 'X-RAY DIFFRACTION' 4 ? refined 52.0637 53.6580 -12.3690 0.2047 0.4170 0.2242 0.0282 -0.0380 -0.0640 0.0001 0.0728 0.1286 -0.0128 -0.0144 -0.0668 0.0129 -0.0470 -0.0888 -0.1433 0.0241 -0.1001 -0.1662 -0.1149 0.1516 'X-RAY DIFFRACTION' 5 ? refined 41.8389 52.5316 -15.2894 0.2568 0.5047 0.2981 -0.0272 -0.0030 -0.0683 0.0201 0.0040 0.0114 -0.0051 -0.0090 0.0167 0.0358 -0.0601 -0.0001 -0.1683 -0.0489 -0.0151 0.2067 -0.0605 -0.0244 'X-RAY DIFFRACTION' 6 ? refined 32.4508 59.8400 -24.8152 0.1713 0.5272 0.1125 0.1384 -0.2243 -0.1158 0.0127 0.0153 0.0073 0.0142 0.0066 0.0045 -0.0181 0.0031 -0.1083 0.1072 -0.0577 -0.0136 -0.0947 0.0074 0.0204 'X-RAY DIFFRACTION' 7 ? refined 33.9166 71.4215 -12.5223 0.4604 0.4830 0.6408 0.1760 0.1514 -0.1762 0.0020 0.0034 0.0094 -0.0014 -0.0020 -0.0041 0.0099 0.0329 -0.0000 -0.0034 0.0781 0.0387 -0.0283 -0.0478 -0.0093 'X-RAY DIFFRACTION' 8 ? refined 32.9323 60.6065 -13.2379 0.2926 0.7664 0.2828 0.1809 -0.0486 -0.1456 0.0064 0.0528 0.0406 -0.0167 0.0071 0.0073 -0.0605 -0.0192 -0.0157 -0.0046 0.0246 0.0132 -0.0124 0.0630 -0.0585 'X-RAY DIFFRACTION' 9 ? refined 29.3464 52.0149 -15.6255 0.8272 0.6671 0.5633 0.0879 0.2322 -0.0020 0.0025 0.0043 0.0006 0.0003 -0.0014 -0.0001 -0.0313 -0.0115 -0.0000 0.0105 -0.0195 0.0304 0.0396 -0.0104 -0.0176 'X-RAY DIFFRACTION' 10 ? refined 41.7223 20.0122 -4.7936 1.2728 0.5870 1.3996 -0.1677 0.1989 -0.0496 0.0041 0.0096 0.0003 -0.0034 -0.0011 0.0038 0.0190 -0.0032 -0.0001 -0.0817 -0.0320 0.0613 0.0137 -0.0371 -0.0819 'X-RAY DIFFRACTION' 11 ? refined 49.8948 38.8347 -1.5178 0.3066 0.2419 0.3396 -0.0156 0.0365 -0.0984 0.0782 0.0149 0.0564 -0.0255 0.0232 -0.0383 -0.1463 -0.0625 -0.0312 -0.0090 -0.2736 -0.0374 0.2188 0.3103 -0.1224 'X-RAY DIFFRACTION' 12 ? refined 45.0622 74.5048 8.0250 1.2613 -0.2726 0.6308 0.0463 -0.0458 -0.1980 0.2919 0.0815 0.1146 0.1192 -0.0906 -0.0966 0.0167 -0.4215 -0.2904 -0.3659 0.6782 0.2711 0.2129 -0.8303 -0.1494 'X-RAY DIFFRACTION' 13 ? refined 42.8111 83.9020 7.2545 1.4456 -0.2647 0.8542 0.3357 0.0559 -0.2449 0.0085 0.2360 0.1757 0.0455 -0.0250 0.0654 -0.1527 -0.1798 -0.3909 0.0261 0.5861 -0.1416 0.2017 -0.2510 -0.1849 'X-RAY DIFFRACTION' 14 ? refined 49.2398 43.7899 -0.8431 0.5248 0.2195 0.3159 0.0090 0.0967 -0.0434 0.0830 0.0293 0.0952 0.0586 -0.0393 -0.0526 -0.1098 -0.1237 -0.0218 -0.0144 -0.2025 -0.0308 -0.0032 0.2887 0.0825 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 131 A 132 '( CHAIN A AND RESID 131:132 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 133 A 141 '( CHAIN A AND RESID 133:141 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 142 A 153 '( CHAIN A AND RESID 142:153 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 154 A 184 '( CHAIN A AND RESID 154:184 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 185 A 208 '( CHAIN A AND RESID 185:208 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 209 A 224 '( CHAIN A AND RESID 209:224 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 225 A 234 '( CHAIN A AND RESID 225:234 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 235 A 241 '( CHAIN A AND RESID 235:241 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 242 A 246 '( CHAIN A AND RESID 242:246 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 1 B 4 '( CHAIN B AND RESID 1:4 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 5 B 13 '( CHAIN B AND RESID 5:13 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 B 14 B 26 '( CHAIN B AND RESID 14:26 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 13 13 C 1 C 13 '( CHAIN C AND RESID 1:13 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 14 14 C 14 C 26 '( CHAIN C AND RESID 14:26 )' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 108 ? A MET 1 2 1 Y 1 A GLY 109 ? A GLY 2 3 1 Y 1 A SER 110 ? A SER 3 4 1 Y 1 A SER 111 ? A SER 4 5 1 Y 1 A HIS 112 ? A HIS 5 6 1 Y 1 A HIS 113 ? A HIS 6 7 1 Y 1 A HIS 114 ? A HIS 7 8 1 Y 1 A HIS 115 ? A HIS 8 9 1 Y 1 A HIS 116 ? A HIS 9 10 1 Y 1 A HIS 117 ? A HIS 10 11 1 Y 1 A SER 118 ? A SER 11 12 1 Y 1 A SER 119 ? A SER 12 13 1 Y 1 A GLY 120 ? A GLY 13 14 1 Y 1 A LEU 121 ? A LEU 14 15 1 Y 1 A VAL 122 ? A VAL 15 16 1 Y 1 A PRO 123 ? A PRO 16 17 1 Y 1 A ARG 124 ? A ARG 17 18 1 Y 1 A GLY 125 ? A GLY 18 19 1 Y 1 A SER 126 ? A SER 19 20 1 Y 1 A HIS 127 ? A HIS 20 21 1 Y 1 A MET 128 ? A MET 21 22 1 Y 1 A ALA 129 ? A ALA 22 23 1 Y 1 A LYS 130 ? A LYS 23 24 1 Y 1 A ARG 247 ? A ARG 140 25 1 Y 1 A LYS 248 ? A LYS 141 26 1 Y 1 A GLN 249 ? A GLN 142 27 1 Y 1 A ASN 250 ? A ASN 143 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BRU N1 N N N 74 BRU C2 C N N 75 BRU N3 N N N 76 BRU C4 C N N 77 BRU C5 C N N 78 BRU C6 C N N 79 BRU O2 O N N 80 BRU O4 O N N 81 BRU BR BR N N 82 BRU "C1'" C N R 83 BRU "C2'" C N N 84 BRU "C3'" C N S 85 BRU "C4'" C N R 86 BRU "O3'" O N N 87 BRU "O4'" O N N 88 BRU "C5'" C N N 89 BRU "O5'" O N N 90 BRU P P N N 91 BRU OP1 O N N 92 BRU OP2 O N N 93 BRU OP3 O N N 94 BRU HN3 H N N 95 BRU H6 H N N 96 BRU "H1'" H N N 97 BRU "H2'" H N N 98 BRU "H2''" H N N 99 BRU "H3'" H N N 100 BRU "H4'" H N N 101 BRU "HO3'" H N N 102 BRU "H5'" H N N 103 BRU "H5''" H N N 104 BRU HOP2 H N N 105 BRU HOP3 H N N 106 DA OP3 O N N 107 DA P P N N 108 DA OP1 O N N 109 DA OP2 O N N 110 DA "O5'" O N N 111 DA "C5'" C N N 112 DA "C4'" C N R 113 DA "O4'" O N N 114 DA "C3'" C N S 115 DA "O3'" O N N 116 DA "C2'" C N N 117 DA "C1'" C N R 118 DA N9 N Y N 119 DA C8 C Y N 120 DA N7 N Y N 121 DA C5 C Y N 122 DA C6 C Y N 123 DA N6 N N N 124 DA N1 N Y N 125 DA C2 C Y N 126 DA N3 N Y N 127 DA C4 C Y N 128 DA HOP3 H N N 129 DA HOP2 H N N 130 DA "H5'" H N N 131 DA "H5''" H N N 132 DA "H4'" H N N 133 DA "H3'" H N N 134 DA "HO3'" H N N 135 DA "H2'" H N N 136 DA "H2''" H N N 137 DA "H1'" H N N 138 DA H8 H N N 139 DA H61 H N N 140 DA H62 H N N 141 DA H2 H N N 142 DC OP3 O N N 143 DC P P N N 144 DC OP1 O N N 145 DC OP2 O N N 146 DC "O5'" O N N 147 DC "C5'" C N N 148 DC "C4'" C N R 149 DC "O4'" O N N 150 DC "C3'" C N S 151 DC "O3'" O N N 152 DC "C2'" C N N 153 DC "C1'" C N R 154 DC N1 N N N 155 DC C2 C N N 156 DC O2 O N N 157 DC N3 N N N 158 DC C4 C N N 159 DC N4 N N N 160 DC C5 C N N 161 DC C6 C N N 162 DC HOP3 H N N 163 DC HOP2 H N N 164 DC "H5'" H N N 165 DC "H5''" H N N 166 DC "H4'" H N N 167 DC "H3'" H N N 168 DC "HO3'" H N N 169 DC "H2'" H N N 170 DC "H2''" H N N 171 DC "H1'" H N N 172 DC H41 H N N 173 DC H42 H N N 174 DC H5 H N N 175 DC H6 H N N 176 DG OP3 O N N 177 DG P P N N 178 DG OP1 O N N 179 DG OP2 O N N 180 DG "O5'" O N N 181 DG "C5'" C N N 182 DG "C4'" C N R 183 DG "O4'" O N N 184 DG "C3'" C N S 185 DG "O3'" O N N 186 DG "C2'" C N N 187 DG "C1'" C N R 188 DG N9 N Y N 189 DG C8 C Y N 190 DG N7 N Y N 191 DG C5 C Y N 192 DG C6 C N N 193 DG O6 O N N 194 DG N1 N N N 195 DG C2 C N N 196 DG N2 N N N 197 DG N3 N N N 198 DG C4 C Y N 199 DG HOP3 H N N 200 DG HOP2 H N N 201 DG "H5'" H N N 202 DG "H5''" H N N 203 DG "H4'" H N N 204 DG "H3'" H N N 205 DG "HO3'" H N N 206 DG "H2'" H N N 207 DG "H2''" H N N 208 DG "H1'" H N N 209 DG H8 H N N 210 DG H1 H N N 211 DG H21 H N N 212 DG H22 H N N 213 DT OP3 O N N 214 DT P P N N 215 DT OP1 O N N 216 DT OP2 O N N 217 DT "O5'" O N N 218 DT "C5'" C N N 219 DT "C4'" C N R 220 DT "O4'" O N N 221 DT "C3'" C N S 222 DT "O3'" O N N 223 DT "C2'" C N N 224 DT "C1'" C N R 225 DT N1 N N N 226 DT C2 C N N 227 DT O2 O N N 228 DT N3 N N N 229 DT C4 C N N 230 DT O4 O N N 231 DT C5 C N N 232 DT C7 C N N 233 DT C6 C N N 234 DT HOP3 H N N 235 DT HOP2 H N N 236 DT "H5'" H N N 237 DT "H5''" H N N 238 DT "H4'" H N N 239 DT "H3'" H N N 240 DT "HO3'" H N N 241 DT "H2'" H N N 242 DT "H2''" H N N 243 DT "H1'" H N N 244 DT H3 H N N 245 DT H71 H N N 246 DT H72 H N N 247 DT H73 H N N 248 DT H6 H N N 249 GLN N N N N 250 GLN CA C N S 251 GLN C C N N 252 GLN O O N N 253 GLN CB C N N 254 GLN CG C N N 255 GLN CD C N N 256 GLN OE1 O N N 257 GLN NE2 N N N 258 GLN OXT O N N 259 GLN H H N N 260 GLN H2 H N N 261 GLN HA H N N 262 GLN HB2 H N N 263 GLN HB3 H N N 264 GLN HG2 H N N 265 GLN HG3 H N N 266 GLN HE21 H N N 267 GLN HE22 H N N 268 GLN HXT H N N 269 GLU N N N N 270 GLU CA C N S 271 GLU C C N N 272 GLU O O N N 273 GLU CB C N N 274 GLU CG C N N 275 GLU CD C N N 276 GLU OE1 O N N 277 GLU OE2 O N N 278 GLU OXT O N N 279 GLU H H N N 280 GLU H2 H N N 281 GLU HA H N N 282 GLU HB2 H N N 283 GLU HB3 H N N 284 GLU HG2 H N N 285 GLU HG3 H N N 286 GLU HE2 H N N 287 GLU HXT H N N 288 GLY N N N N 289 GLY CA C N N 290 GLY C C N N 291 GLY O O N N 292 GLY OXT O N N 293 GLY H H N N 294 GLY H2 H N N 295 GLY HA2 H N N 296 GLY HA3 H N N 297 GLY HXT H N N 298 HIS N N N N 299 HIS CA C N S 300 HIS C C N N 301 HIS O O N N 302 HIS CB C N N 303 HIS CG C Y N 304 HIS ND1 N Y N 305 HIS CD2 C Y N 306 HIS CE1 C Y N 307 HIS NE2 N Y N 308 HIS OXT O N N 309 HIS H H N N 310 HIS H2 H N N 311 HIS HA H N N 312 HIS HB2 H N N 313 HIS HB3 H N N 314 HIS HD1 H N N 315 HIS HD2 H N N 316 HIS HE1 H N N 317 HIS HE2 H N N 318 HIS HXT H N N 319 HOH O O N N 320 HOH H1 H N N 321 HOH H2 H N N 322 ILE N N N N 323 ILE CA C N S 324 ILE C C N N 325 ILE O O N N 326 ILE CB C N S 327 ILE CG1 C N N 328 ILE CG2 C N N 329 ILE CD1 C N N 330 ILE OXT O N N 331 ILE H H N N 332 ILE H2 H N N 333 ILE HA H N N 334 ILE HB H N N 335 ILE HG12 H N N 336 ILE HG13 H N N 337 ILE HG21 H N N 338 ILE HG22 H N N 339 ILE HG23 H N N 340 ILE HD11 H N N 341 ILE HD12 H N N 342 ILE HD13 H N N 343 ILE HXT H N N 344 LEU N N N N 345 LEU CA C N S 346 LEU C C N N 347 LEU O O N N 348 LEU CB C N N 349 LEU CG C N N 350 LEU CD1 C N N 351 LEU CD2 C N N 352 LEU OXT O N N 353 LEU H H N N 354 LEU H2 H N N 355 LEU HA H N N 356 LEU HB2 H N N 357 LEU HB3 H N N 358 LEU HG H N N 359 LEU HD11 H N N 360 LEU HD12 H N N 361 LEU HD13 H N N 362 LEU HD21 H N N 363 LEU HD22 H N N 364 LEU HD23 H N N 365 LEU HXT H N N 366 LYS N N N N 367 LYS CA C N S 368 LYS C C N N 369 LYS O O N N 370 LYS CB C N N 371 LYS CG C N N 372 LYS CD C N N 373 LYS CE C N N 374 LYS NZ N N N 375 LYS OXT O N N 376 LYS H H N N 377 LYS H2 H N N 378 LYS HA H N N 379 LYS HB2 H N N 380 LYS HB3 H N N 381 LYS HG2 H N N 382 LYS HG3 H N N 383 LYS HD2 H N N 384 LYS HD3 H N N 385 LYS HE2 H N N 386 LYS HE3 H N N 387 LYS HZ1 H N N 388 LYS HZ2 H N N 389 LYS HZ3 H N N 390 LYS HXT H N N 391 MET N N N N 392 MET CA C N S 393 MET C C N N 394 MET O O N N 395 MET CB C N N 396 MET CG C N N 397 MET SD S N N 398 MET CE C N N 399 MET OXT O N N 400 MET H H N N 401 MET H2 H N N 402 MET HA H N N 403 MET HB2 H N N 404 MET HB3 H N N 405 MET HG2 H N N 406 MET HG3 H N N 407 MET HE1 H N N 408 MET HE2 H N N 409 MET HE3 H N N 410 MET HXT H N N 411 PHE N N N N 412 PHE CA C N S 413 PHE C C N N 414 PHE O O N N 415 PHE CB C N N 416 PHE CG C Y N 417 PHE CD1 C Y N 418 PHE CD2 C Y N 419 PHE CE1 C Y N 420 PHE CE2 C Y N 421 PHE CZ C Y N 422 PHE OXT O N N 423 PHE H H N N 424 PHE H2 H N N 425 PHE HA H N N 426 PHE HB2 H N N 427 PHE HB3 H N N 428 PHE HD1 H N N 429 PHE HD2 H N N 430 PHE HE1 H N N 431 PHE HE2 H N N 432 PHE HZ H N N 433 PHE HXT H N N 434 PRO N N N N 435 PRO CA C N S 436 PRO C C N N 437 PRO O O N N 438 PRO CB C N N 439 PRO CG C N N 440 PRO CD C N N 441 PRO OXT O N N 442 PRO H H N N 443 PRO HA H N N 444 PRO HB2 H N N 445 PRO HB3 H N N 446 PRO HG2 H N N 447 PRO HG3 H N N 448 PRO HD2 H N N 449 PRO HD3 H N N 450 PRO HXT H N N 451 SER N N N N 452 SER CA C N S 453 SER C C N N 454 SER O O N N 455 SER CB C N N 456 SER OG O N N 457 SER OXT O N N 458 SER H H N N 459 SER H2 H N N 460 SER HA H N N 461 SER HB2 H N N 462 SER HB3 H N N 463 SER HG H N N 464 SER HXT H N N 465 THR N N N N 466 THR CA C N S 467 THR C C N N 468 THR O O N N 469 THR CB C N R 470 THR OG1 O N N 471 THR CG2 C N N 472 THR OXT O N N 473 THR H H N N 474 THR H2 H N N 475 THR HA H N N 476 THR HB H N N 477 THR HG1 H N N 478 THR HG21 H N N 479 THR HG22 H N N 480 THR HG23 H N N 481 THR HXT H N N 482 TYR N N N N 483 TYR CA C N S 484 TYR C C N N 485 TYR O O N N 486 TYR CB C N N 487 TYR CG C Y N 488 TYR CD1 C Y N 489 TYR CD2 C Y N 490 TYR CE1 C Y N 491 TYR CE2 C Y N 492 TYR CZ C Y N 493 TYR OH O N N 494 TYR OXT O N N 495 TYR H H N N 496 TYR H2 H N N 497 TYR HA H N N 498 TYR HB2 H N N 499 TYR HB3 H N N 500 TYR HD1 H N N 501 TYR HD2 H N N 502 TYR HE1 H N N 503 TYR HE2 H N N 504 TYR HH H N N 505 TYR HXT H N N 506 VAL N N N N 507 VAL CA C N S 508 VAL C C N N 509 VAL O O N N 510 VAL CB C N N 511 VAL CG1 C N N 512 VAL CG2 C N N 513 VAL OXT O N N 514 VAL H H N N 515 VAL H2 H N N 516 VAL HA H N N 517 VAL HB H N N 518 VAL HG11 H N N 519 VAL HG12 H N N 520 VAL HG13 H N N 521 VAL HG21 H N N 522 VAL HG22 H N N 523 VAL HG23 H N N 524 VAL HXT H N N 525 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BRU N1 C2 sing N N 70 BRU N1 C6 sing N N 71 BRU N1 "C1'" sing N N 72 BRU C2 N3 sing N N 73 BRU C2 O2 doub N N 74 BRU N3 C4 sing N N 75 BRU N3 HN3 sing N N 76 BRU C4 C5 sing N N 77 BRU C4 O4 doub N N 78 BRU C5 C6 doub N N 79 BRU C5 BR sing N N 80 BRU C6 H6 sing N N 81 BRU "C1'" "C2'" sing N N 82 BRU "C1'" "O4'" sing N N 83 BRU "C1'" "H1'" sing N N 84 BRU "C2'" "C3'" sing N N 85 BRU "C2'" "H2'" sing N N 86 BRU "C2'" "H2''" sing N N 87 BRU "C3'" "C4'" sing N N 88 BRU "C3'" "O3'" sing N N 89 BRU "C3'" "H3'" sing N N 90 BRU "C4'" "O4'" sing N N 91 BRU "C4'" "C5'" sing N N 92 BRU "C4'" "H4'" sing N N 93 BRU "O3'" "HO3'" sing N N 94 BRU "C5'" "O5'" sing N N 95 BRU "C5'" "H5'" sing N N 96 BRU "C5'" "H5''" sing N N 97 BRU "O5'" P sing N N 98 BRU P OP1 doub N N 99 BRU P OP2 sing N N 100 BRU P OP3 sing N N 101 BRU OP2 HOP2 sing N N 102 BRU OP3 HOP3 sing N N 103 DA OP3 P sing N N 104 DA OP3 HOP3 sing N N 105 DA P OP1 doub N N 106 DA P OP2 sing N N 107 DA P "O5'" sing N N 108 DA OP2 HOP2 sing N N 109 DA "O5'" "C5'" sing N N 110 DA "C5'" "C4'" sing N N 111 DA "C5'" "H5'" sing N N 112 DA "C5'" "H5''" sing N N 113 DA "C4'" "O4'" sing N N 114 DA "C4'" "C3'" sing N N 115 DA "C4'" "H4'" sing N N 116 DA "O4'" "C1'" sing N N 117 DA "C3'" "O3'" sing N N 118 DA "C3'" "C2'" sing N N 119 DA "C3'" "H3'" sing N N 120 DA "O3'" "HO3'" sing N N 121 DA "C2'" "C1'" sing N N 122 DA "C2'" "H2'" sing N N 123 DA "C2'" "H2''" sing N N 124 DA "C1'" N9 sing N N 125 DA "C1'" "H1'" sing N N 126 DA N9 C8 sing Y N 127 DA N9 C4 sing Y N 128 DA C8 N7 doub Y N 129 DA C8 H8 sing N N 130 DA N7 C5 sing Y N 131 DA C5 C6 sing Y N 132 DA C5 C4 doub Y N 133 DA C6 N6 sing N N 134 DA C6 N1 doub Y N 135 DA N6 H61 sing N N 136 DA N6 H62 sing N N 137 DA N1 C2 sing Y N 138 DA C2 N3 doub Y N 139 DA C2 H2 sing N N 140 DA N3 C4 sing Y N 141 DC OP3 P sing N N 142 DC OP3 HOP3 sing N N 143 DC P OP1 doub N N 144 DC P OP2 sing N N 145 DC P "O5'" sing N N 146 DC OP2 HOP2 sing N N 147 DC "O5'" "C5'" sing N N 148 DC "C5'" "C4'" sing N N 149 DC "C5'" "H5'" sing N N 150 DC "C5'" "H5''" sing N N 151 DC "C4'" "O4'" sing N N 152 DC "C4'" "C3'" sing N N 153 DC "C4'" "H4'" sing N N 154 DC "O4'" "C1'" sing N N 155 DC "C3'" "O3'" sing N N 156 DC "C3'" "C2'" sing N N 157 DC "C3'" "H3'" sing N N 158 DC "O3'" "HO3'" sing N N 159 DC "C2'" "C1'" sing N N 160 DC "C2'" "H2'" sing N N 161 DC "C2'" "H2''" sing N N 162 DC "C1'" N1 sing N N 163 DC "C1'" "H1'" sing N N 164 DC N1 C2 sing N N 165 DC N1 C6 sing N N 166 DC C2 O2 doub N N 167 DC C2 N3 sing N N 168 DC N3 C4 doub N N 169 DC C4 N4 sing N N 170 DC C4 C5 sing N N 171 DC N4 H41 sing N N 172 DC N4 H42 sing N N 173 DC C5 C6 doub N N 174 DC C5 H5 sing N N 175 DC C6 H6 sing N N 176 DG OP3 P sing N N 177 DG OP3 HOP3 sing N N 178 DG P OP1 doub N N 179 DG P OP2 sing N N 180 DG P "O5'" sing N N 181 DG OP2 HOP2 sing N N 182 DG "O5'" "C5'" sing N N 183 DG "C5'" "C4'" sing N N 184 DG "C5'" "H5'" sing N N 185 DG "C5'" "H5''" sing N N 186 DG "C4'" "O4'" sing N N 187 DG "C4'" "C3'" sing N N 188 DG "C4'" "H4'" sing N N 189 DG "O4'" "C1'" sing N N 190 DG "C3'" "O3'" sing N N 191 DG "C3'" "C2'" sing N N 192 DG "C3'" "H3'" sing N N 193 DG "O3'" "HO3'" sing N N 194 DG "C2'" "C1'" sing N N 195 DG "C2'" "H2'" sing N N 196 DG "C2'" "H2''" sing N N 197 DG "C1'" N9 sing N N 198 DG "C1'" "H1'" sing N N 199 DG N9 C8 sing Y N 200 DG N9 C4 sing Y N 201 DG C8 N7 doub Y N 202 DG C8 H8 sing N N 203 DG N7 C5 sing Y N 204 DG C5 C6 sing N N 205 DG C5 C4 doub Y N 206 DG C6 O6 doub N N 207 DG C6 N1 sing N N 208 DG N1 C2 sing N N 209 DG N1 H1 sing N N 210 DG C2 N2 sing N N 211 DG C2 N3 doub N N 212 DG N2 H21 sing N N 213 DG N2 H22 sing N N 214 DG N3 C4 sing N N 215 DT OP3 P sing N N 216 DT OP3 HOP3 sing N N 217 DT P OP1 doub N N 218 DT P OP2 sing N N 219 DT P "O5'" sing N N 220 DT OP2 HOP2 sing N N 221 DT "O5'" "C5'" sing N N 222 DT "C5'" "C4'" sing N N 223 DT "C5'" "H5'" sing N N 224 DT "C5'" "H5''" sing N N 225 DT "C4'" "O4'" sing N N 226 DT "C4'" "C3'" sing N N 227 DT "C4'" "H4'" sing N N 228 DT "O4'" "C1'" sing N N 229 DT "C3'" "O3'" sing N N 230 DT "C3'" "C2'" sing N N 231 DT "C3'" "H3'" sing N N 232 DT "O3'" "HO3'" sing N N 233 DT "C2'" "C1'" sing N N 234 DT "C2'" "H2'" sing N N 235 DT "C2'" "H2''" sing N N 236 DT "C1'" N1 sing N N 237 DT "C1'" "H1'" sing N N 238 DT N1 C2 sing N N 239 DT N1 C6 sing N N 240 DT C2 O2 doub N N 241 DT C2 N3 sing N N 242 DT N3 C4 sing N N 243 DT N3 H3 sing N N 244 DT C4 O4 doub N N 245 DT C4 C5 sing N N 246 DT C5 C7 sing N N 247 DT C5 C6 doub N N 248 DT C7 H71 sing N N 249 DT C7 H72 sing N N 250 DT C7 H73 sing N N 251 DT C6 H6 sing N N 252 GLN N CA sing N N 253 GLN N H sing N N 254 GLN N H2 sing N N 255 GLN CA C sing N N 256 GLN CA CB sing N N 257 GLN CA HA sing N N 258 GLN C O doub N N 259 GLN C OXT sing N N 260 GLN CB CG sing N N 261 GLN CB HB2 sing N N 262 GLN CB HB3 sing N N 263 GLN CG CD sing N N 264 GLN CG HG2 sing N N 265 GLN CG HG3 sing N N 266 GLN CD OE1 doub N N 267 GLN CD NE2 sing N N 268 GLN NE2 HE21 sing N N 269 GLN NE2 HE22 sing N N 270 GLN OXT HXT sing N N 271 GLU N CA sing N N 272 GLU N H sing N N 273 GLU N H2 sing N N 274 GLU CA C sing N N 275 GLU CA CB sing N N 276 GLU CA HA sing N N 277 GLU C O doub N N 278 GLU C OXT sing N N 279 GLU CB CG sing N N 280 GLU CB HB2 sing N N 281 GLU CB HB3 sing N N 282 GLU CG CD sing N N 283 GLU CG HG2 sing N N 284 GLU CG HG3 sing N N 285 GLU CD OE1 doub N N 286 GLU CD OE2 sing N N 287 GLU OE2 HE2 sing N N 288 GLU OXT HXT sing N N 289 GLY N CA sing N N 290 GLY N H sing N N 291 GLY N H2 sing N N 292 GLY CA C sing N N 293 GLY CA HA2 sing N N 294 GLY CA HA3 sing N N 295 GLY C O doub N N 296 GLY C OXT sing N N 297 GLY OXT HXT sing N N 298 HIS N CA sing N N 299 HIS N H sing N N 300 HIS N H2 sing N N 301 HIS CA C sing N N 302 HIS CA CB sing N N 303 HIS CA HA sing N N 304 HIS C O doub N N 305 HIS C OXT sing N N 306 HIS CB CG sing N N 307 HIS CB HB2 sing N N 308 HIS CB HB3 sing N N 309 HIS CG ND1 sing Y N 310 HIS CG CD2 doub Y N 311 HIS ND1 CE1 doub Y N 312 HIS ND1 HD1 sing N N 313 HIS CD2 NE2 sing Y N 314 HIS CD2 HD2 sing N N 315 HIS CE1 NE2 sing Y N 316 HIS CE1 HE1 sing N N 317 HIS NE2 HE2 sing N N 318 HIS OXT HXT sing N N 319 HOH O H1 sing N N 320 HOH O H2 sing N N 321 ILE N CA sing N N 322 ILE N H sing N N 323 ILE N H2 sing N N 324 ILE CA C sing N N 325 ILE CA CB sing N N 326 ILE CA HA sing N N 327 ILE C O doub N N 328 ILE C OXT sing N N 329 ILE CB CG1 sing N N 330 ILE CB CG2 sing N N 331 ILE CB HB sing N N 332 ILE CG1 CD1 sing N N 333 ILE CG1 HG12 sing N N 334 ILE CG1 HG13 sing N N 335 ILE CG2 HG21 sing N N 336 ILE CG2 HG22 sing N N 337 ILE CG2 HG23 sing N N 338 ILE CD1 HD11 sing N N 339 ILE CD1 HD12 sing N N 340 ILE CD1 HD13 sing N N 341 ILE OXT HXT sing N N 342 LEU N CA sing N N 343 LEU N H sing N N 344 LEU N H2 sing N N 345 LEU CA C sing N N 346 LEU CA CB sing N N 347 LEU CA HA sing N N 348 LEU C O doub N N 349 LEU C OXT sing N N 350 LEU CB CG sing N N 351 LEU CB HB2 sing N N 352 LEU CB HB3 sing N N 353 LEU CG CD1 sing N N 354 LEU CG CD2 sing N N 355 LEU CG HG sing N N 356 LEU CD1 HD11 sing N N 357 LEU CD1 HD12 sing N N 358 LEU CD1 HD13 sing N N 359 LEU CD2 HD21 sing N N 360 LEU CD2 HD22 sing N N 361 LEU CD2 HD23 sing N N 362 LEU OXT HXT sing N N 363 LYS N CA sing N N 364 LYS N H sing N N 365 LYS N H2 sing N N 366 LYS CA C sing N N 367 LYS CA CB sing N N 368 LYS CA HA sing N N 369 LYS C O doub N N 370 LYS C OXT sing N N 371 LYS CB CG sing N N 372 LYS CB HB2 sing N N 373 LYS CB HB3 sing N N 374 LYS CG CD sing N N 375 LYS CG HG2 sing N N 376 LYS CG HG3 sing N N 377 LYS CD CE sing N N 378 LYS CD HD2 sing N N 379 LYS CD HD3 sing N N 380 LYS CE NZ sing N N 381 LYS CE HE2 sing N N 382 LYS CE HE3 sing N N 383 LYS NZ HZ1 sing N N 384 LYS NZ HZ2 sing N N 385 LYS NZ HZ3 sing N N 386 LYS OXT HXT sing N N 387 MET N CA sing N N 388 MET N H sing N N 389 MET N H2 sing N N 390 MET CA C sing N N 391 MET CA CB sing N N 392 MET CA HA sing N N 393 MET C O doub N N 394 MET C OXT sing N N 395 MET CB CG sing N N 396 MET CB HB2 sing N N 397 MET CB HB3 sing N N 398 MET CG SD sing N N 399 MET CG HG2 sing N N 400 MET CG HG3 sing N N 401 MET SD CE sing N N 402 MET CE HE1 sing N N 403 MET CE HE2 sing N N 404 MET CE HE3 sing N N 405 MET OXT HXT sing N N 406 PHE N CA sing N N 407 PHE N H sing N N 408 PHE N H2 sing N N 409 PHE CA C sing N N 410 PHE CA CB sing N N 411 PHE CA HA sing N N 412 PHE C O doub N N 413 PHE C OXT sing N N 414 PHE CB CG sing N N 415 PHE CB HB2 sing N N 416 PHE CB HB3 sing N N 417 PHE CG CD1 doub Y N 418 PHE CG CD2 sing Y N 419 PHE CD1 CE1 sing Y N 420 PHE CD1 HD1 sing N N 421 PHE CD2 CE2 doub Y N 422 PHE CD2 HD2 sing N N 423 PHE CE1 CZ doub Y N 424 PHE CE1 HE1 sing N N 425 PHE CE2 CZ sing Y N 426 PHE CE2 HE2 sing N N 427 PHE CZ HZ sing N N 428 PHE OXT HXT sing N N 429 PRO N CA sing N N 430 PRO N CD sing N N 431 PRO N H sing N N 432 PRO CA C sing N N 433 PRO CA CB sing N N 434 PRO CA HA sing N N 435 PRO C O doub N N 436 PRO C OXT sing N N 437 PRO CB CG sing N N 438 PRO CB HB2 sing N N 439 PRO CB HB3 sing N N 440 PRO CG CD sing N N 441 PRO CG HG2 sing N N 442 PRO CG HG3 sing N N 443 PRO CD HD2 sing N N 444 PRO CD HD3 sing N N 445 PRO OXT HXT sing N N 446 SER N CA sing N N 447 SER N H sing N N 448 SER N H2 sing N N 449 SER CA C sing N N 450 SER CA CB sing N N 451 SER CA HA sing N N 452 SER C O doub N N 453 SER C OXT sing N N 454 SER CB OG sing N N 455 SER CB HB2 sing N N 456 SER CB HB3 sing N N 457 SER OG HG sing N N 458 SER OXT HXT sing N N 459 THR N CA sing N N 460 THR N H sing N N 461 THR N H2 sing N N 462 THR CA C sing N N 463 THR CA CB sing N N 464 THR CA HA sing N N 465 THR C O doub N N 466 THR C OXT sing N N 467 THR CB OG1 sing N N 468 THR CB CG2 sing N N 469 THR CB HB sing N N 470 THR OG1 HG1 sing N N 471 THR CG2 HG21 sing N N 472 THR CG2 HG22 sing N N 473 THR CG2 HG23 sing N N 474 THR OXT HXT sing N N 475 TYR N CA sing N N 476 TYR N H sing N N 477 TYR N H2 sing N N 478 TYR CA C sing N N 479 TYR CA CB sing N N 480 TYR CA HA sing N N 481 TYR C O doub N N 482 TYR C OXT sing N N 483 TYR CB CG sing N N 484 TYR CB HB2 sing N N 485 TYR CB HB3 sing N N 486 TYR CG CD1 doub Y N 487 TYR CG CD2 sing Y N 488 TYR CD1 CE1 sing Y N 489 TYR CD1 HD1 sing N N 490 TYR CD2 CE2 doub Y N 491 TYR CD2 HD2 sing N N 492 TYR CE1 CZ doub Y N 493 TYR CE1 HE1 sing N N 494 TYR CE2 CZ sing Y N 495 TYR CE2 HE2 sing N N 496 TYR CZ OH sing N N 497 TYR OH HH sing N N 498 TYR OXT HXT sing N N 499 VAL N CA sing N N 500 VAL N H sing N N 501 VAL N H2 sing N N 502 VAL CA C sing N N 503 VAL CA CB sing N N 504 VAL CA HA sing N N 505 VAL C O doub N N 506 VAL C OXT sing N N 507 VAL CB CG1 sing N N 508 VAL CB CG2 sing N N 509 VAL CB HB sing N N 510 VAL CG1 HG11 sing N N 511 VAL CG1 HG12 sing N N 512 VAL CG1 HG13 sing N N 513 VAL CG2 HG21 sing N N 514 VAL CG2 HG22 sing N N 515 VAL CG2 HG23 sing N N 516 VAL OXT HXT sing N N 517 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VWB 'double helix' 3VWB 'b-form double helix' 3VWB 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 4 1_555 C DG 26 1_555 -0.297 -0.160 0.347 6.395 -33.515 -0.843 1 C_DC4:DG26_B C 4 ? B 26 ? 19 1 1 B BRU 5 1_555 C DA 25 1_555 -0.345 0.235 0.487 -9.842 -12.700 -7.642 2 C_BRU5:DA25_B C 5 ? B 25 ? 20 1 1 B DC 6 1_555 C DG 24 1_555 -1.759 0.734 -0.827 11.877 -3.142 4.368 3 C_DC6:DG24_B C 6 ? B 24 ? ? ? 1 B DG 7 1_555 C DC 23 1_555 0.201 -0.292 0.375 9.288 -18.366 -5.362 4 C_DG7:DC23_B C 7 ? B 23 ? 19 1 1 B DT 9 1_555 C DA 21 1_555 -0.339 -0.115 -0.330 8.135 -7.408 -3.480 5 C_DT9:DA21_B C 9 ? B 21 ? 20 1 1 B DT 10 1_555 C DA 20 1_555 -0.136 -0.079 -0.472 7.674 -17.976 -1.693 6 C_DT10:DA20_B C 10 ? B 20 ? 20 1 1 B DC 11 1_555 C DG 19 1_555 -0.023 -0.236 -0.551 1.569 -7.720 0.025 7 C_DC11:DG19_B C 11 ? B 19 ? 19 1 1 B DA 12 1_555 C DT 18 1_555 0.529 -0.193 0.010 -5.976 -6.703 -7.328 8 C_DA12:DT18_B C 12 ? B 18 ? 20 1 1 B DT 13 1_555 C DA 17 1_555 -0.078 0.040 0.074 -1.204 -10.280 3.764 9 C_DT13:DA17_B C 13 ? B 17 ? 20 1 1 B DC 14 1_555 C DG 16 1_555 0.159 -0.045 -0.127 2.675 -7.619 1.595 10 C_DC14:DG16_B C 14 ? B 16 ? 19 1 1 B DA 15 1_555 C DT 15 1_555 -0.093 -0.061 -0.068 2.404 -15.429 3.238 11 C_DA15:DT15_B C 15 ? B 15 ? 20 1 1 B DT 16 1_555 C DA 14 1_555 -0.279 -0.118 -0.070 5.412 -9.846 4.442 12 C_DT16:DA14_B C 16 ? B 14 ? 20 1 1 B DG 17 1_555 C DC 13 1_555 -0.019 -0.213 0.178 15.965 -7.510 -1.665 13 C_DG17:DC13_B C 17 ? B 13 ? 19 1 1 B DA 18 1_555 C DT 12 1_555 0.026 -0.166 0.055 6.299 -29.074 -0.624 14 C_DA18:DT12_B C 18 ? B 12 ? 20 1 1 B DA 19 1_555 C DT 11 1_555 0.121 0.017 -0.062 5.662 -22.900 3.172 15 C_DA19:DT11_B C 19 ? B 11 ? 20 1 1 B DA 20 1_555 C DT 10 1_555 -0.127 -0.034 0.140 0.700 -21.877 0.852 16 C_DA20:DT10_B C 20 ? B 10 ? 20 1 1 B BRU 21 1_555 C DA 9 1_555 -0.431 0.090 -0.003 2.640 -14.482 -0.663 17 C_BRU21:DA9_B C 21 ? B 9 ? 20 1 1 B DC 22 1_555 C DG 8 1_555 0.058 -0.084 0.090 -2.614 -24.512 1.678 18 C_DC22:DG8_B C 22 ? B 8 ? 19 1 1 B DC 23 1_555 C DG 7 1_555 -0.225 -0.120 0.214 -12.380 -5.740 -0.546 19 C_DC23:DG7_B C 23 ? B 7 ? 19 1 1 B DC 24 1_555 C DG 6 1_555 0.172 -0.079 0.154 5.605 -10.410 0.807 20 C_DC24:DG6_B C 24 ? B 6 ? 19 1 1 B DA 25 1_555 C DT 5 1_555 0.591 -0.216 -0.205 -0.954 -9.269 -9.640 21 C_DA25:DT5_B C 25 ? B 5 ? 20 1 1 B DC 26 1_555 C DG 4 1_555 0.631 -0.351 0.291 5.955 -5.919 1.212 22 C_DC26:DG4_B C 26 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 4 1_555 C DG 26 1_555 B BRU 5 1_555 C DA 25 1_555 -0.516 -0.647 3.761 2.804 4.477 34.168 -1.871 1.359 3.597 7.563 -4.737 34.561 1 CC_DC4BRU5:DA25DG26_BB C 4 ? B 26 ? C 5 ? B 25 ? 1 B BRU 5 1_555 C DA 25 1_555 B DC 6 1_555 C DG 24 1_555 0.930 -0.550 2.673 8.633 4.864 17.630 -3.482 0.749 2.598 14.480 -25.698 20.205 2 CC_BRU5DC6:DG24DA25_BB C 5 ? B 25 ? C 6 ? B 24 ? 1 B DC 6 1_555 C DG 24 1_555 B DG 7 1_555 C DC 23 1_555 -0.538 1.128 3.428 -11.289 12.861 51.045 0.355 -0.189 3.630 14.467 12.698 53.654 3 CC_DC6DG7:DC23DG24_BB C 6 ? B 24 ? C 7 ? B 23 ? 1 B DG 7 1_555 C DC 23 1_555 B DT 9 1_555 C DA 21 1_555 -0.249 -1.545 6.541 3.307 3.553 56.849 -2.006 0.622 6.419 3.725 -3.467 57.038 4 CC_DG7DT9:DA21DC23_BB C 7 ? B 23 ? C 9 ? B 21 ? 1 B DT 9 1_555 C DA 21 1_555 B DT 10 1_555 C DA 20 1_555 -0.107 -0.194 3.221 1.535 -0.291 37.016 -0.267 0.371 3.216 -0.458 -2.416 37.047 5 CC_DT9DT10:DA20DA21_BB C 9 ? B 21 ? C 10 ? B 20 ? 1 B DT 10 1_555 C DA 20 1_555 B DC 11 1_555 C DG 19 1_555 0.915 0.099 3.392 4.073 3.682 39.552 -0.301 -0.846 3.461 5.409 -5.984 39.916 6 CC_DT10DC11:DG19DA20_BB C 10 ? B 20 ? C 11 ? B 19 ? 1 B DC 11 1_555 C DG 19 1_555 B DA 12 1_555 C DT 18 1_555 -0.491 -0.008 3.609 -4.937 10.435 31.499 -1.934 -0.056 3.467 18.463 8.736 33.497 7 CC_DC11DA12:DT18DG19_BB C 11 ? B 19 ? C 12 ? B 18 ? 1 B DA 12 1_555 C DT 18 1_555 B DT 13 1_555 C DA 17 1_555 0.109 -0.802 3.208 -0.915 -3.429 27.336 -0.851 -0.451 3.277 -7.216 1.926 27.561 8 CC_DA12DT13:DA17DT18_BB C 12 ? B 18 ? C 13 ? B 17 ? 1 B DT 13 1_555 C DA 17 1_555 B DC 14 1_555 C DG 16 1_555 0.694 0.190 3.191 5.217 3.023 35.707 -0.117 -0.388 3.261 4.887 -8.434 36.196 9 CC_DT13DC14:DG16DA17_BB C 13 ? B 17 ? C 14 ? B 16 ? 1 B DC 14 1_555 C DG 16 1_555 B DA 15 1_555 C DT 15 1_555 -0.617 1.176 3.433 -1.961 1.852 38.381 1.541 0.677 3.510 2.813 2.978 38.472 10 CC_DC14DA15:DT15DG16_BB C 14 ? B 16 ? C 15 ? B 15 ? 1 B DA 15 1_555 C DT 15 1_555 B DT 16 1_555 C DA 14 1_555 0.065 -0.720 3.246 -0.749 2.807 29.535 -1.985 -0.282 3.163 5.489 1.464 29.674 11 CC_DA15DT16:DA14DT15_BB C 15 ? B 15 ? C 16 ? B 14 ? 1 B DT 16 1_555 C DA 14 1_555 B DG 17 1_555 C DC 13 1_555 -0.026 1.009 3.086 0.201 10.218 32.414 0.104 0.076 3.245 17.761 -0.349 33.946 12 CC_DT16DG17:DC13DA14_BB C 16 ? B 14 ? C 17 ? B 13 ? 1 B DG 17 1_555 C DC 13 1_555 B DA 18 1_555 C DT 12 1_555 -0.576 0.839 3.601 0.951 2.656 36.700 0.929 1.055 3.635 4.210 -1.508 36.805 13 CC_DG17DA18:DT12DC13_BB C 17 ? B 13 ? C 18 ? B 12 ? 1 B DA 18 1_555 C DT 12 1_555 B DA 19 1_555 C DT 11 1_555 0.403 0.243 3.132 2.410 0.584 40.334 0.289 -0.322 3.153 0.846 -3.492 40.407 14 CC_DA18DA19:DT11DT12_BB C 18 ? B 12 ? C 19 ? B 11 ? 1 B DA 19 1_555 C DT 11 1_555 B DA 20 1_555 C DT 10 1_555 -0.132 -0.013 3.249 -2.284 -1.708 37.479 0.201 -0.091 3.249 -2.654 3.549 37.583 15 CC_DA19DA20:DT10DT11_BB C 19 ? B 11 ? C 20 ? B 10 ? 1 B DA 20 1_555 C DT 10 1_555 B BRU 21 1_555 C DA 9 1_555 0.031 -0.701 3.180 0.914 -2.236 32.515 -0.868 0.100 3.219 -3.986 -1.630 32.602 16 CC_DA20BRU21:DA9DT10_BB C 20 ? B 10 ? C 21 ? B 9 ? 1 B BRU 21 1_555 C DA 9 1_555 B DC 22 1_555 C DG 8 1_555 0.361 -0.249 3.354 1.989 -4.965 42.827 0.165 -0.290 3.374 -6.768 -2.711 43.144 17 CC_BRU21DC22:DG8DA9_BB C 21 ? B 9 ? C 22 ? B 8 ? 1 B DC 22 1_555 C DG 8 1_555 B DC 23 1_555 C DG 7 1_555 0.837 0.055 3.461 3.278 4.301 35.973 -0.554 -0.852 3.505 6.916 -5.271 36.364 18 CC_DC22DC23:DG7DG8_BB C 22 ? B 8 ? C 23 ? B 7 ? 1 B DC 23 1_555 C DG 7 1_555 B DC 24 1_555 C DG 6 1_555 -0.253 0.211 2.868 0.826 9.562 24.567 -1.812 0.752 2.745 21.455 -1.853 26.349 19 CC_DC23DC24:DG6DG7_BB C 23 ? B 7 ? C 24 ? B 6 ? 1 B DC 24 1_555 C DG 6 1_555 B DA 25 1_555 C DT 5 1_555 -0.778 1.361 3.505 2.616 -5.192 45.231 2.231 1.243 3.290 -6.718 -3.385 45.583 20 CC_DC24DA25:DT5DG6_BB C 24 ? B 6 ? C 25 ? B 5 ? 1 B DA 25 1_555 C DT 5 1_555 B DC 26 1_555 C DG 4 1_555 1.259 -0.376 3.098 -2.117 1.649 29.001 -1.083 -2.934 2.975 3.285 4.215 29.122 21 CC_DA25DC26:DG4DT5_BB C 25 ? B 5 ? C 26 ? B 4 ? # _atom_sites.entry_id 3VWB _atom_sites.fract_transf_matrix[1][1] 0.017446 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006133 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025272 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H N O P S # loop_