HEADER ISOMERASE 03-SEP-12 3VWW TITLE CRYSTAL STRUCTURE OF A0-DOMAIN OF P5 FROM H. SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: A0 DOMAIN, UNP RESIDUES 25-140; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM PROTEIN 5, ER PROTEIN 5, ERP5, PROTEIN COMPND 6 DISULFIDE ISOMERASE P5, THIOREDOXIN DOMAIN-CONTAINING PROTEIN 7; COMPND 7 EC: 5.3.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDIA6, ERP5, P5, TXNDC7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDI FAMILY MEMBER, THIOREDOXIN FOLD, PROTEIN DISULFIDE ISOMERASE, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INABA,M.SUZUKI REVDAT 1 04-SEP-13 3VWW 0 JRNL AUTH Y.SATO,R.KOJIMA,M.OKUMURA,M.HAGIWARA,S.MASUI,K.MAEGAWA, JRNL AUTH 2 M.SAIKI,T.HORIBE,M.SUZUKI,K.INABA JRNL TITL SYNERGISTIC COOPERATION OF PDI FAMILY MEMBERS IN JRNL TITL 2 PEROXIREDOXIN 4-DRIVEN OXIDATIVE PROTEIN FOLDING JRNL REF SCI REP V. 3 2456 2013 JRNL REFN ESSN 2045-2322 JRNL PMID 23949117 JRNL DOI 10.1038/SREP02456 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0340 - 3.5028 0.99 2863 150 0.1668 0.2133 REMARK 3 2 3.5028 - 2.7809 1.00 2784 154 0.1712 0.1967 REMARK 3 3 2.7809 - 2.4296 1.00 2821 146 0.1825 0.2883 REMARK 3 4 2.4296 - 2.2075 1.00 2785 140 0.1689 0.2318 REMARK 3 5 2.2075 - 2.0493 1.00 2775 148 0.1712 0.2499 REMARK 3 6 2.0493 - 1.9285 1.00 2743 163 0.1917 0.2778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94280 REMARK 3 B22 (A**2) : -1.54580 REMARK 3 B33 (A**2) : 2.48870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.15420 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1868 REMARK 3 ANGLE : 1.028 2536 REMARK 3 CHIRALITY : 0.075 274 REMARK 3 PLANARITY : 0.004 330 REMARK 3 DIHEDRAL : 12.599 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 27:36) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4353 40.2741 -2.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1084 REMARK 3 T33: 0.1874 T12: 0.0107 REMARK 3 T13: 0.0696 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 8.8803 L22: 4.8026 REMARK 3 L33: 5.4104 L12: 2.0033 REMARK 3 L13: 5.5046 L23: 3.7835 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0383 S13: 0.2321 REMARK 3 S21: -0.3558 S22: -0.0333 S23: -0.3721 REMARK 3 S31: 0.0835 S32: 0.3679 S33: 0.0550 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 37:47) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9084 29.5862 -0.1069 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.1610 REMARK 3 T33: 0.1692 T12: 0.0255 REMARK 3 T13: 0.0854 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 4.9270 L22: 4.4738 REMARK 3 L33: 5.8671 L12: -0.1533 REMARK 3 L13: -0.6113 L23: 0.0885 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: 0.3624 S13: -0.6224 REMARK 3 S21: -0.6298 S22: -0.0844 S23: -0.5219 REMARK 3 S31: 0.8268 S32: 0.7215 S33: 0.0686 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 48:57) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2691 44.7274 1.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.0955 REMARK 3 T33: 0.1085 T12: -0.0453 REMARK 3 T13: -0.0058 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.6473 L22: 9.8400 REMARK 3 L33: 1.5375 L12: -4.6309 REMARK 3 L13: 1.0867 L23: -3.1970 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.0918 S13: 0.0571 REMARK 3 S21: 0.0766 S22: 0.1311 S23: -0.1178 REMARK 3 S31: -0.1465 S32: 0.0562 S33: -0.0808 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 58:78) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0950 45.9685 9.5123 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.1108 REMARK 3 T33: 0.1642 T12: -0.0129 REMARK 3 T13: 0.0323 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 4.6753 L22: 3.6698 REMARK 3 L33: 3.6411 L12: -2.5887 REMARK 3 L13: 1.9499 L23: -2.1884 REMARK 3 S TENSOR REMARK 3 S11: -0.2725 S12: -0.0218 S13: 0.3013 REMARK 3 S21: 0.1485 S22: 0.1818 S23: -0.5279 REMARK 3 S31: -0.5545 S32: 0.2625 S33: 0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 79:94) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4629 41.1283 -3.8772 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.0188 REMARK 3 T33: 0.1427 T12: -0.0003 REMARK 3 T13: 0.0200 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.6568 L22: 3.8249 REMARK 3 L33: 3.9963 L12: -0.4077 REMARK 3 L13: 1.5177 L23: 0.4061 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: 0.4817 S13: -0.2870 REMARK 3 S21: -0.4262 S22: -0.1766 S23: 0.2637 REMARK 3 S31: 0.0769 S32: -0.1475 S33: 0.0616 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 95:110) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2700 36.5760 4.1078 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.0932 REMARK 3 T33: 0.1381 T12: -0.0078 REMARK 3 T13: 0.0218 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.0345 L22: 5.6725 REMARK 3 L33: 1.4373 L12: 0.3721 REMARK 3 L13: -0.0341 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: 0.0076 S13: -0.0286 REMARK 3 S21: -0.0407 S22: 0.0607 S23: 0.5632 REMARK 3 S31: -0.0411 S32: -0.0389 S33: -0.0274 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resseq 111:115) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0050 30.2487 6.5742 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1455 REMARK 3 T33: 0.1856 T12: -0.0201 REMARK 3 T13: 0.0292 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 8.6663 L22: 2.4082 REMARK 3 L33: 2.2930 L12: -1.9230 REMARK 3 L13: 1.4769 L23: 1.6759 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: -0.0989 S13: -0.6122 REMARK 3 S21: 0.2801 S22: -0.1312 S23: -0.0021 REMARK 3 S31: 0.4304 S32: -0.4582 S33: -0.0785 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resseq 116:142) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9437 33.7359 16.0001 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.1352 REMARK 3 T33: 0.1083 T12: 0.0135 REMARK 3 T13: -0.0086 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.4863 L22: 3.5932 REMARK 3 L33: 2.2010 L12: -3.7823 REMARK 3 L13: -0.5679 L23: 0.7327 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.1939 S13: -0.1013 REMARK 3 S21: 0.3043 S22: 0.1136 S23: 0.3256 REMARK 3 S31: 0.0426 S32: 0.0250 S33: -0.1108 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'B' and (resseq 27:47) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3450 26.8070 14.9602 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1458 REMARK 3 T33: 0.0313 T12: 0.0323 REMARK 3 T13: 0.0354 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.9055 L22: 4.3088 REMARK 3 L33: 1.4078 L12: -3.0872 REMARK 3 L13: 0.2760 L23: 0.8268 REMARK 3 S TENSOR REMARK 3 S11: 0.4470 S12: 0.7050 S13: 0.5935 REMARK 3 S21: -0.8586 S22: -0.5619 S23: -0.7158 REMARK 3 S31: -0.0303 S32: 0.0762 S33: -0.0787 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'B' and (resseq 48:110) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5037 19.9211 23.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0648 REMARK 3 T33: 0.0478 T12: 0.0063 REMARK 3 T13: 0.0130 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.1713 L22: 3.6073 REMARK 3 L33: 2.0283 L12: -1.0035 REMARK 3 L13: 0.6585 L23: -0.5202 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: -0.0386 S13: -0.1870 REMARK 3 S21: 0.1113 S22: -0.0504 S23: -0.0039 REMARK 3 S31: 0.1274 S32: -0.0011 S33: -0.0339 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'B' and (resseq 111:121) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0396 26.0338 29.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.2644 REMARK 3 T33: 0.1186 T12: 0.0270 REMARK 3 T13: 0.0383 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 5.8015 L22: 5.3579 REMARK 3 L33: 4.1276 L12: 4.3027 REMARK 3 L13: -1.3825 L23: -1.4420 REMARK 3 S TENSOR REMARK 3 S11: 0.2192 S12: -0.7653 S13: 0.4375 REMARK 3 S21: 0.4479 S22: -0.3829 S23: 0.4493 REMARK 3 S31: -0.1747 S32: -0.1297 S33: 0.1037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: chain 'B' and (resseq 122:142) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7066 32.5127 22.5723 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1311 REMARK 3 T33: 0.1578 T12: 0.0327 REMARK 3 T13: 0.0006 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 2.2695 L22: 4.6427 REMARK 3 L33: 3.0651 L12: -1.5851 REMARK 3 L13: 0.3830 L23: -2.7457 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: -0.2582 S13: 0.2215 REMARK 3 S21: 0.6279 S22: 0.1070 S23: 0.7094 REMARK 3 S31: -0.3041 S32: -0.2127 S33: -0.0282 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB095601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 30.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 4000, 50MM SODIUM PHOSPHATE (PH REMARK 280 6.7), VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.23050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.62050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.23050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.62050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 321 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 111 O HOH A 362 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 98 -95.80 -102.67 REMARK 500 ARG A 120 55.62 -93.59 REMARK 500 VAL B 77 -55.43 -125.32 REMARK 500 HIS B 88 63.65 -108.60 REMARK 500 GLN B 98 -105.22 -99.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DML RELATED DB: PDB REMARK 900 NMR STRUCTURE OF P5 A0-DOMAIN REMARK 900 RELATED ID: 3VWU RELATED DB: PDB REMARK 900 RELATED ID: 3VWV RELATED DB: PDB REMARK 900 RELATED ID: 3W8J RELATED DB: PDB DBREF 3VWW A 27 142 UNP Q15084 PDIA6_HUMAN 25 140 DBREF 3VWW B 27 142 UNP Q15084 PDIA6_HUMAN 25 140 SEQRES 1 A 116 ASP ASP VAL ILE GLU LEU THR PRO SER ASN PHE ASN ARG SEQRES 2 A 116 GLU VAL ILE GLN SER ASP SER LEU TRP LEU VAL GLU PHE SEQRES 3 A 116 TYR ALA PRO TRP CYS GLY HIS CYS GLN ARG LEU THR PRO SEQRES 4 A 116 GLU TRP LYS LYS ALA ALA THR ALA LEU LYS ASP VAL VAL SEQRES 5 A 116 LYS VAL GLY ALA VAL ASP ALA ASP LYS HIS HIS SER LEU SEQRES 6 A 116 GLY GLY GLN TYR GLY VAL GLN GLY PHE PRO THR ILE MLY SEQRES 7 A 116 ILE PHE GLY SER ASN LYS ASN ARG PRO GLU ASP TYR GLN SEQRES 8 A 116 GLY GLY ARG THR GLY GLU ALA ILE VAL ASP ALA ALA LEU SEQRES 9 A 116 SER ALA LEU ARG GLN LEU VAL LYS ASP ARG LEU GLY SEQRES 1 B 116 ASP ASP VAL ILE GLU LEU THR PRO SER ASN PHE ASN ARG SEQRES 2 B 116 GLU VAL ILE GLN SER ASP SER LEU TRP LEU VAL GLU PHE SEQRES 3 B 116 TYR ALA PRO TRP CYS GLY HIS CYS GLN ARG LEU THR PRO SEQRES 4 B 116 GLU TRP LYS LYS ALA ALA THR ALA LEU LYS ASP VAL VAL SEQRES 5 B 116 LYS VAL GLY ALA VAL ASP ALA ASP LYS HIS HIS SER LEU SEQRES 6 B 116 GLY GLY GLN TYR GLY VAL GLN GLY PHE PRO THR ILE MLY SEQRES 7 B 116 ILE PHE GLY SER ASN LYS ASN ARG PRO GLU ASP TYR GLN SEQRES 8 B 116 GLY GLY ARG THR GLY GLU ALA ILE VAL ASP ALA ALA LEU SEQRES 9 B 116 SER ALA LEU ARG GLN LEU VAL LYS ASP ARG LEU GLY MODRES 3VWW MLY A 104 LYS N-DIMETHYL-LYSINE MODRES 3VWW MLY B 104 LYS N-DIMETHYL-LYSINE HET MLY A 104 11 HET MLY B 104 11 HET PO4 A 201 5 HET PO4 B 201 5 HETNAM MLY N-DIMETHYL-LYSINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *176(H2 O) HELIX 1 1 ASN A 36 VAL A 41 1 6 HELIX 2 2 CYS A 57 LEU A 74 1 18 HELIX 3 3 HIS A 88 TYR A 95 1 8 HELIX 4 4 THR A 121 GLY A 142 1 22 HELIX 5 5 ASN B 36 VAL B 41 1 6 HELIX 6 6 CYS B 57 LEU B 74 1 18 HELIX 7 7 HIS B 88 TYR B 95 1 8 HELIX 8 8 THR B 121 GLY B 142 1 22 SHEET 1 A 5 ILE A 30 GLU A 31 0 SHEET 2 A 5 LYS A 79 ASP A 84 1 O VAL A 80 N ILE A 30 SHEET 3 A 5 TRP A 48 TYR A 53 1 N GLU A 51 O VAL A 83 SHEET 4 A 5 THR A 102 PHE A 106 -1 O THR A 102 N PHE A 52 SHEET 5 A 5 GLU A 114 TYR A 116 -1 O GLU A 114 N ILE A 105 SHEET 1 B 5 ILE B 30 LEU B 32 0 SHEET 2 B 5 LYS B 79 ASP B 84 1 O ALA B 82 N LEU B 32 SHEET 3 B 5 TRP B 48 TYR B 53 1 N LEU B 49 O GLY B 81 SHEET 4 B 5 THR B 102 PHE B 106 -1 O THR B 102 N PHE B 52 SHEET 5 B 5 GLU B 114 ASP B 115 -1 O GLU B 114 N ILE B 105 LINK C ILE A 103 N MLY A 104 1555 1555 1.34 LINK C MLY A 104 N ILE A 105 1555 1555 1.33 LINK C ILE B 103 N MLY B 104 1555 1555 1.33 LINK C MLY B 104 N ILE B 105 1555 1555 1.33 CISPEP 1 PHE A 100 PRO A 101 0 -5.83 CISPEP 2 PHE B 100 PRO B 101 0 -6.41 SITE 1 AC1 6 HIS A 59 PRO A 101 ARG A 120 HOH A 368 SITE 2 AC1 6 HOH A 380 SER B 35 SITE 1 AC2 4 HIS A 59 ARG A 62 ASN B 38 GLN B 43 CRYST1 90.461 43.241 61.245 90.00 101.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011054 0.000000 0.002206 0.00000 SCALE2 0.000000 0.023126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016650 0.00000