HEADER LIGASE 11-SEP-12 3VX7 TITLE CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD-ATG10 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: E2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 3 ORGANISM_TAXID: 4911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGBHPS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 11 ORGANISM_TAXID: 4911; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS UBIQUITIN CONJUGATION, E1-E2 COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YAMAGUCHI,K.MATOBA,R.SAWADA,Y.FUJIOKA,H.NAKATOGAWA,H.YAMAMOTO, AUTHOR 2 Y.KOBASHIGAWA,H.HOSHIDA,R.AKADA,Y.OHSUMI,N.N.NODA,F.INAGAKI REVDAT 3 08-NOV-23 3VX7 1 REMARK REVDAT 2 18-OCT-23 3VX7 1 JRNL REVDAT 1 14-NOV-12 3VX7 0 JRNL AUTH M.YAMAGUCHI,K.MATOBA,R.SAWADA,Y.FUJIOKA,H.NAKATOGAWA, JRNL AUTH 2 H.YAMAMOTO,Y.KOBASHIGAWA,H.HOSHIDA,R.AKADA,Y.OHSUMI, JRNL AUTH 3 N.N.NODA,F.INAGAKI JRNL TITL NONCANONICAL RECOGNITION AND UBL LOADING OF DISTINCT E2S BY JRNL TITL 2 AUTOPHAGY-ESSENTIAL ATG7. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1250 2012 JRNL REFN ESSN 1545-9985 JRNL PMID 23142983 JRNL DOI 10.1038/NSMB.2451 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 215793.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 16465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2245 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.420 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.630 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.730 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 63.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3VX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000095612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18382 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SODIUM PHOSPHATE, 0.7M POTASSIUM REMARK 280 PHOSPHATE, 0.2M LITHIUM SULFATE, 0.1M CHES, PH 9.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.96750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.96750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.96750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.96750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 92.96750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 92.96750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 92.96750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 92.96750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 92.96750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 92.96750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 92.96750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 92.96750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 92.96750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 139.45125 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.48375 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 139.45125 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 139.45125 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 139.45125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 46.48375 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 139.45125 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 46.48375 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 139.45125 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 46.48375 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 139.45125 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 46.48375 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 46.48375 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 139.45125 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 46.48375 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 139.45125 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 139.45125 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 139.45125 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 46.48375 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 139.45125 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 139.45125 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 46.48375 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 46.48375 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 46.48375 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 139.45125 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 46.48375 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 139.45125 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 46.48375 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 139.45125 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 139.45125 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 139.45125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 HIS A -1 REMARK 465 ILE A 30 REMARK 465 PHE A 31 REMARK 465 LYS A 32 REMARK 465 LEU A 33 REMARK 465 ASP A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 69 REMARK 465 GLU A 70 REMARK 465 MET A 277 REMARK 465 ASP A 278 REMARK 465 PRO A 279 REMARK 465 GLY B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 ASN A 68 CG OD1 ND2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 SER A 165 OG REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ASN A 188 CG OD1 ND2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 SER A 275 OG REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 SER B 85 OG REMARK 470 SER B 89 OG REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 139 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 0.31 -63.74 REMARK 500 LEU A 28 59.57 -115.44 REMARK 500 ARG A 59 -151.58 -82.91 REMARK 500 SER A 62 42.66 -78.67 REMARK 500 PHE A 63 18.94 -140.75 REMARK 500 PHE A 88 -71.73 -83.45 REMARK 500 CYS A 91 103.88 -171.19 REMARK 500 ASN A 111 -82.73 -137.73 REMARK 500 GLU A 115 3.18 -60.53 REMARK 500 PRO A 139 132.17 -36.57 REMARK 500 ASP A 144 142.83 -38.95 REMARK 500 SER A 178 -2.72 88.68 REMARK 500 GLN A 182 135.59 171.66 REMARK 500 LYS A 183 122.59 -33.82 REMARK 500 ALA A 184 62.67 -69.58 REMARK 500 PRO A 186 -38.84 -37.71 REMARK 500 LEU A 189 30.90 -82.37 REMARK 500 ASP A 199 146.99 -38.27 REMARK 500 PHE A 200 42.21 -103.41 REMARK 500 TRP A 218 -33.97 -39.26 REMARK 500 LEU A 221 -63.84 -94.92 REMARK 500 SER A 222 78.19 -117.54 REMARK 500 ASP A 235 -163.38 -72.03 REMARK 500 ASN A 247 8.40 59.55 REMARK 500 ASN A 249 -1.27 -145.82 REMARK 500 TRP B 21 98.08 -63.05 REMARK 500 ALA B 22 -6.31 -52.99 REMARK 500 THR B 42 20.40 -70.25 REMARK 500 ASP B 43 14.01 -164.41 REMARK 500 VAL B 55 -72.62 -65.07 REMARK 500 HIS B 57 59.85 -98.90 REMARK 500 ARG B 64 141.68 -171.34 REMARK 500 GLU B 71 -79.88 -67.92 REMARK 500 GLU B 72 -78.83 -121.88 REMARK 500 MET B 106 53.86 38.35 REMARK 500 SER B 108 -152.33 -142.60 REMARK 500 HIS B 128 11.11 83.55 REMARK 500 TRP B 133 -80.12 -61.58 REMARK 500 ASP B 142 111.58 -165.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VX6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A FREE FORM REMARK 900 RELATED ID: 3VX8 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DATABASE REFERENCE FOR EACH CHAIN DOES NOT CURRENTLY EXIST. DBREF 3VX7 A -3 279 PDB 3VX7 3VX7 -3 279 DBREF 3VX7 B -4 147 PDB 3VX7 3VX7 -4 147 SEQRES 1 A 283 GLY PRO HIS MET MET VAL SER ASP LEU LYS PHE ALA PRO SEQRES 2 A 283 SER PHE GLN SER PHE VAL ASP SER SER PHE PHE HIS GLU SEQRES 3 A 283 LEU SER ARG LEU LYS LEU ASP ILE PHE LYS LEU ASP SER SEQRES 4 A 283 ASP GLU LYS ALA LEU TYR THR GLN LEU ASP LEU ASN GLN SEQRES 5 A 283 PHE THR SER ASN VAL LEU ALA ILE SER LEU ARG ASP ASP SEQRES 6 A 283 SER PHE GLN LYS PRO ASP ASN ASP GLU HIS ASN ILE ILE SEQRES 7 A 283 LEU LYS GLY TYR LEU LEU ASN PHE ASN THR ILE GLU LEU SEQRES 8 A 283 PHE LYS ASN CYS ASN LYS ILE GLN PHE ILE LYS GLU LYS SEQRES 9 A 283 GLY GLN GLU LEU LEU GLN ARG GLY LEU GLU ASN ASP LEU SEQRES 10 A 283 ASN GLU ILE ILE SER PHE TYR MET ILE SER PHE ALA ASP SEQRES 11 A 283 LEU LYS LYS TYR LYS PHE TYR TYR TRP ILE CYS MET PRO SEQRES 12 A 283 SER PHE GLN SER ASP GLY ALA THR TYR GLN ILE ILE SER SEQRES 13 A 283 SER LYS VAL ILE ALA SER ASP SER ASP ILE SER VAL SER SEQRES 14 A 283 PHE ILE LYS GLN ASN VAL ILE ILE ALA CYS VAL ILE SER SEQRES 15 A 283 GLY VAL ILE GLN LYS ALA THR PRO ASP ASN LEU LYS VAL SEQRES 16 A 283 CYS GLU LYS VAL VAL PHE LYS ASP PHE SER HIS LEU LYS SEQRES 17 A 283 ASP ILE PRO SER ALA VAL THR LYS ASN ILE LEU THR VAL SEQRES 18 A 283 TRP SER LYS LEU SER PRO ARG GLU THR TYR THR ILE CYS SEQRES 19 A 283 PHE LEU ARG SER ASP GLU SER SER PHE GLU ALA GLU ILE SEQRES 20 A 283 ILE ILE ASN ASN GLY ASN ASN PRO SER LEU LYS VAL SER SEQRES 21 A 283 GLY TRP GLU LYS ASN GLY LEU GLY LYS LEU ALA PRO LYS SEQRES 22 A 283 SER ILE ASP LEU SER SER LEU MET ASP PRO SEQRES 1 B 152 GLY PRO LEU GLY SER MET LEU THR LEU PRO GLU TYR ASN SEQRES 2 B 152 GLU GLN ILE PRO ASN VAL ARG SER LEU LEU THR LYS TRP SEQRES 3 B 152 ALA LYS VAL GLU ARG ILE GLN ASP VAL GLN ASP GLY LEU SEQRES 4 B 152 GLN LEU ASP VAL ARG LEU LYS THR ASP THR LEU LEU GLU SEQRES 5 B 152 LEU HIS ILE TYR TYR ASP HIS VAL TYR HIS VAL PRO SER SEQRES 6 B 152 ILE LYS PHE ARG LEU TRP SER LEU ASP THR GLU GLU ASP SEQRES 7 B 152 ILE SER SER LEU ARG LEU LEU THR LEU SER ASP SER GLU SEQRES 8 B 152 LEU ARG SER ILE LEU ASN LEU GLY THR PHE SER VAL THR SEQRES 9 B 152 LEU SER THR ASP MET GLU MET LYS SER VAL TYR TYR TYR SEQRES 10 B 152 ILE ASN ASN CYS ASP THR ASP ALA ASN VAL GLY SER ASP SEQRES 11 B 152 VAL GLU HIS TYR LEU THR ARG TRP ILE SER LEU TYR ILE SEQRES 12 B 152 ARG ILE PHE ASP LEU ASN PHE VAL PRO HELIX 1 1 SER A 17 LEU A 28 1 12 HELIX 2 2 THR A 84 ASN A 90 1 7 HELIX 3 3 ASN A 92 ASN A 111 1 20 HELIX 4 4 LEU A 113 ILE A 117 5 5 HELIX 5 5 SER A 160 GLN A 169 1 10 HELIX 6 6 ASP A 187 VAL A 191 5 5 HELIX 7 7 VAL A 210 SER A 222 1 13 HELIX 8 8 THR B 3 TRP B 21 1 19 HELIX 9 9 SER B 83 LEU B 91 1 9 HELIX 10 10 ASP B 117 GLY B 123 1 7 HELIX 11 11 HIS B 128 ILE B 138 1 11 HELIX 12 12 ARG B 139 PHE B 141 5 3 SHEET 1 A 6 SER A 3 ASP A 4 0 SHEET 2 A 6 THR A 147 LYS A 154 -1 O ILE A 150 N SER A 3 SHEET 3 A 6 PHE A 239 ASN A 246 -1 O GLU A 242 N ILE A 151 SHEET 4 A 6 TYR A 227 PHE A 231 -1 N ILE A 229 O ALA A 241 SHEET 5 A 6 LYS A 194 PHE A 197 1 N PHE A 197 O CYS A 230 SHEET 6 A 6 ILE A 173 VAL A 176 -1 N ALA A 174 O VAL A 196 SHEET 1 B 2 PHE A 11 VAL A 15 0 SHEET 2 B 2 LEU A 54 LEU A 58 1 O ILE A 56 N GLN A 12 SHEET 1 C10 LYS A 38 GLN A 43 0 SHEET 2 C10 ILE A 74 ASN A 81 -1 O GLY A 77 N LEU A 40 SHEET 3 C10 TYR A 120 ASP A 126 1 O MET A 121 N LEU A 80 SHEET 4 C10 LYS A 131 SER A 143 -1 O TYR A 133 N PHE A 124 SHEET 5 C10 LYS A 269 ASP A 272 -1 O LYS A 269 N TYR A 134 SHEET 6 C10 SER B 75 LEU B 79 1 O SER B 75 N SER A 270 SHEET 7 C10 PRO B 59 THR B 70 -1 N ASP B 69 O SER B 76 SHEET 8 C10 THR B 44 TYR B 52 -1 N TYR B 51 O SER B 60 SHEET 9 C10 GLY B 33 LYS B 41 -1 N VAL B 38 O LEU B 46 SHEET 10 C10 VAL B 24 VAL B 30 -1 N GLN B 28 O GLN B 35 SHEET 1 D 7 LEU A 253 TRP A 258 0 SHEET 2 D 7 LYS A 131 SER A 143 -1 N MET A 138 O GLY A 257 SHEET 3 D 7 LYS A 269 ASP A 272 -1 O LYS A 269 N TYR A 134 SHEET 4 D 7 SER B 75 LEU B 79 1 O SER B 75 N SER A 270 SHEET 5 D 7 PRO B 59 THR B 70 -1 N ASP B 69 O SER B 76 SHEET 6 D 7 VAL B 109 ILE B 113 -1 O TYR B 111 N PHE B 63 SHEET 7 D 7 VAL B 98 THR B 102 -1 N THR B 99 O TYR B 112 CRYST1 185.935 185.935 185.935 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005378 0.00000