HEADER SUGAR BINDING PROTEIN 11-SEP-12 3VXC TITLE CRYSTAL STRUCTURE OF XYLOBIOSE-BXLE COMPLEX FROM STREPTOMYCES TITLE 2 THERMOVIOLACEUS OPC-520 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR-BINDING LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THERMOVIOLACEUS; SOURCE 3 ORGANISM_TAXID: 1952; SOURCE 4 GENE: BXLD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC TRANSPORTER, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TOMOO,T.ISHIDA,K.MIYAMOTO,H.TSUJIBO REVDAT 3 20-MAR-24 3VXC 1 HETSYN REVDAT 2 29-JUL-20 3VXC 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 18-SEP-13 3VXC 0 JRNL AUTH K.TOMOO,T.ISHIDA,K.MIYAMOTO,H.TSUJIBO JRNL TITL CRYSTAL STRUCTURE OF XYLOOLIGOSACCHARIDE-BINDING PROTEIN JRNL TITL 2 FROM STREPTOMYCES THERMOVIOLACEUS OPC-520: DRAMATIC JRNL TITL 3 CONFORMATIONAL CHANGE WITH LIGAND BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 59174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6270 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8516 ; 1.816 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 794 ; 6.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;36.694 ;25.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1004 ;14.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4790 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3952 ; 1.171 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6316 ; 2.009 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2318 ; 3.548 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2200 ; 5.394 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000095617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 3.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SPRING-8; ROTATING ANODE REMARK 200 BEAMLINE : BL41XU; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M CITRATE, 15% REMARK 280 GLYCEROL, PH 3.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.83600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.57850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.83600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.57850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 TRP A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 CYS A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 GLY A 37 REMARK 465 LYS A 436 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 SER B 3 REMARK 465 TYR B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 TRP B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 GLY B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 LEU B 17 REMARK 465 ILE B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 THR B 24 REMARK 465 ALA B 25 REMARK 465 CYS B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 GLY B 33 REMARK 465 GLY B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 GLY B 37 REMARK 465 LYS B 436 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 865 O HOH A 931 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 353 CE2 TYR A 353 CD2 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 81 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 334 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 94 45.09 -107.83 REMARK 500 ILE A 203 -41.72 69.31 REMARK 500 CYS A 326 -178.72 -170.92 REMARK 500 ASN B 94 43.02 -105.47 REMARK 500 ILE B 203 -40.33 68.12 REMARK 500 HIS B 281 118.75 -161.84 REMARK 500 SER B 398 123.47 -36.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VXB RELATED DB: PDB DBREF 3VXC A 1 436 UNP Q76BU9 Q76BU9_STRTL 1 436 DBREF 3VXC B 1 436 UNP Q76BU9 Q76BU9_STRTL 1 436 SEQRES 1 A 436 MET GLN SER TYR SER ARG ARG TRP PHE LEU GLY ALA GLY SEQRES 2 A 436 ALA THR THR LEU ILE SER ALA ALA GLY LEU THR ALA CYS SEQRES 3 A 436 GLY SER GLY SER GLY SER GLY GLY SER GLY GLY THR ILE SEQRES 4 A 436 THR ALA MET VAL TYR GLY ASP ASP ALA VAL LYS VAL GLN SEQRES 5 A 436 ASP LYS ALA ALA SER ARG PHE ASN ALA SER ALA GLU ALA SEQRES 6 A 436 LYS LYS ALA ASN ALA LYS VAL LYS MET GLU ARG ILE PRO SEQRES 7 A 436 ALA SER ASP TYR PRO ALA LYS LEU ARG THR ALA MET GLY SEQRES 8 A 436 SER PRO ASN ALA PRO ASP ILE PHE PHE ASN TRP GLY GLY SEQRES 9 A 436 GLY SER ILE LYS ALA TYR LYS GLU ALA GLY GLN LEU VAL SEQRES 10 A 436 ASP LEU THR ASP VAL ILE LYS SER ASP GLU VAL LEU SER SEQRES 11 A 436 THR GLY PHE LEU PRO SER VAL VAL ALA ALA GLY SER LEU SEQRES 12 A 436 ASP GLY HIS GLU TYR GLY ILE PRO MET ARG GLY MET GLN SEQRES 13 A 436 PRO VAL LEU LEU PHE TYR ASN LYS SER VAL PHE ALA GLU SEQRES 14 A 436 HIS LYS LEU THR PRO PRO THR THR TRP ASP GLN LEU LEU SEQRES 15 A 436 ASP ASN VAL ALA LYS LEU LYS LYS ALA GLY VAL THR PRO SEQRES 16 A 436 PHE ALA LEU GLY GLY VAL GLU ILE TRP PRO GLU LEU MET SEQRES 17 A 436 TRP LEU GLU TYR LEU VAL ASP ARG ILE GLY GLY PRO GLN SEQRES 18 A 436 VAL PHE ASP LYS ILE ARG ASN GLY ASP ALA SER GLY TRP SEQRES 19 A 436 GLY ASP PRO ALA VAL LEU LYS ALA ALA GLN THR VAL LYS SEQRES 20 A 436 GLN LEU VAL ASP GLU GLY ALA PHE GLY LYS GLY PHE SER SEQRES 21 A 436 SER VAL SER TYR ASN ASN GLY GLY ALA PRO ALA LEU LEU SEQRES 22 A 436 ALA LYS GLY LYS ALA GLY MET HIS LEU MET GLY SER TRP SEQRES 23 A 436 GLU TYR SER THR GLN LEU GLY LYS PHE PRO ASP PHE ALA SEQRES 24 A 436 LYS LYS ASP LEU GLY TRP CYS ALA PHE PRO SER PHE GLU SEQRES 25 A 436 GLY GLY ALA GLY ASP ILE ARG ASN VAL VAL GLY ASN PRO SEQRES 26 A 436 CYS ASN TYR TRP SER VAL ASN ALA ARG THR GLY ASN LYS SEQRES 27 A 436 ASP GLY ALA ILE ALA PHE LEU ARG ASP CYS ALA SER GLU SEQRES 28 A 436 ALA TYR THR LYS ASP LEU ILE ASP ASN GLY ASP VAL PRO SEQRES 29 A 436 THR THR THR ILE ALA GLU ASN MET LEU ASP SER SER PRO SEQRES 30 A 436 ASN PRO GLU PHE ALA LYS PHE GLN TYR GLN LEU VAL GLN SEQRES 31 A 436 LYS ALA PRO ASN PHE THR LEU SER TRP ASP GLN ALA VAL SEQRES 32 A 436 ASP PRO ASP TRP GLN GLN PRO MET LEU THR GLU ILE ASN SEQRES 33 A 436 LYS LEU PHE VAL GLY LYS SER SER PRO GLU GLN PHE VAL SEQRES 34 A 436 SER ALA LEU LYS GLY LEU LYS SEQRES 1 B 436 MET GLN SER TYR SER ARG ARG TRP PHE LEU GLY ALA GLY SEQRES 2 B 436 ALA THR THR LEU ILE SER ALA ALA GLY LEU THR ALA CYS SEQRES 3 B 436 GLY SER GLY SER GLY SER GLY GLY SER GLY GLY THR ILE SEQRES 4 B 436 THR ALA MET VAL TYR GLY ASP ASP ALA VAL LYS VAL GLN SEQRES 5 B 436 ASP LYS ALA ALA SER ARG PHE ASN ALA SER ALA GLU ALA SEQRES 6 B 436 LYS LYS ALA ASN ALA LYS VAL LYS MET GLU ARG ILE PRO SEQRES 7 B 436 ALA SER ASP TYR PRO ALA LYS LEU ARG THR ALA MET GLY SEQRES 8 B 436 SER PRO ASN ALA PRO ASP ILE PHE PHE ASN TRP GLY GLY SEQRES 9 B 436 GLY SER ILE LYS ALA TYR LYS GLU ALA GLY GLN LEU VAL SEQRES 10 B 436 ASP LEU THR ASP VAL ILE LYS SER ASP GLU VAL LEU SER SEQRES 11 B 436 THR GLY PHE LEU PRO SER VAL VAL ALA ALA GLY SER LEU SEQRES 12 B 436 ASP GLY HIS GLU TYR GLY ILE PRO MET ARG GLY MET GLN SEQRES 13 B 436 PRO VAL LEU LEU PHE TYR ASN LYS SER VAL PHE ALA GLU SEQRES 14 B 436 HIS LYS LEU THR PRO PRO THR THR TRP ASP GLN LEU LEU SEQRES 15 B 436 ASP ASN VAL ALA LYS LEU LYS LYS ALA GLY VAL THR PRO SEQRES 16 B 436 PHE ALA LEU GLY GLY VAL GLU ILE TRP PRO GLU LEU MET SEQRES 17 B 436 TRP LEU GLU TYR LEU VAL ASP ARG ILE GLY GLY PRO GLN SEQRES 18 B 436 VAL PHE ASP LYS ILE ARG ASN GLY ASP ALA SER GLY TRP SEQRES 19 B 436 GLY ASP PRO ALA VAL LEU LYS ALA ALA GLN THR VAL LYS SEQRES 20 B 436 GLN LEU VAL ASP GLU GLY ALA PHE GLY LYS GLY PHE SER SEQRES 21 B 436 SER VAL SER TYR ASN ASN GLY GLY ALA PRO ALA LEU LEU SEQRES 22 B 436 ALA LYS GLY LYS ALA GLY MET HIS LEU MET GLY SER TRP SEQRES 23 B 436 GLU TYR SER THR GLN LEU GLY LYS PHE PRO ASP PHE ALA SEQRES 24 B 436 LYS LYS ASP LEU GLY TRP CYS ALA PHE PRO SER PHE GLU SEQRES 25 B 436 GLY GLY ALA GLY ASP ILE ARG ASN VAL VAL GLY ASN PRO SEQRES 26 B 436 CYS ASN TYR TRP SER VAL ASN ALA ARG THR GLY ASN LYS SEQRES 27 B 436 ASP GLY ALA ILE ALA PHE LEU ARG ASP CYS ALA SER GLU SEQRES 28 B 436 ALA TYR THR LYS ASP LEU ILE ASP ASN GLY ASP VAL PRO SEQRES 29 B 436 THR THR THR ILE ALA GLU ASN MET LEU ASP SER SER PRO SEQRES 30 B 436 ASN PRO GLU PHE ALA LYS PHE GLN TYR GLN LEU VAL GLN SEQRES 31 B 436 LYS ALA PRO ASN PHE THR LEU SER TRP ASP GLN ALA VAL SEQRES 32 B 436 ASP PRO ASP TRP GLN GLN PRO MET LEU THR GLU ILE ASN SEQRES 33 B 436 LYS LEU PHE VAL GLY LYS SER SER PRO GLU GLN PHE VAL SEQRES 34 B 436 SER ALA LEU LYS GLY LEU LYS HET XYP C 1 10 HET XYP C 2 9 HET XYP D 1 10 HET XYP D 2 9 HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 XYP 4(C5 H10 O5) FORMUL 5 HOH *466(H2 O) HELIX 1 1 ALA A 48 ALA A 61 1 14 HELIX 2 2 SER A 62 ALA A 68 1 7 HELIX 3 3 PRO A 78 SER A 80 5 3 HELIX 4 4 ASP A 81 GLY A 91 1 11 HELIX 5 5 GLY A 104 ALA A 113 1 10 HELIX 6 6 LEU A 119 ASP A 126 1 8 HELIX 7 7 ASP A 126 THR A 131 1 6 HELIX 8 8 LEU A 134 ALA A 140 1 7 HELIX 9 9 LYS A 164 HIS A 170 1 7 HELIX 10 10 THR A 177 ALA A 191 1 15 HELIX 11 11 ILE A 203 GLY A 219 1 17 HELIX 12 12 PRO A 220 ASN A 228 1 9 HELIX 13 13 ASP A 230 GLY A 235 5 6 HELIX 14 14 ASP A 236 GLU A 252 1 17 HELIX 15 15 GLY A 258 VAL A 262 5 5 HELIX 16 16 GLY A 267 LYS A 275 1 9 HELIX 17 17 SER A 285 PHE A 295 1 11 HELIX 18 18 PHE A 295 ASP A 302 1 8 HELIX 19 19 ASN A 337 CYS A 348 1 12 HELIX 20 20 SER A 350 GLY A 361 1 12 HELIX 21 21 ALA A 369 SER A 376 5 8 HELIX 22 22 ASN A 378 ALA A 392 1 15 HELIX 23 23 SER A 398 VAL A 403 1 6 HELIX 24 24 ASP A 404 VAL A 420 1 17 HELIX 25 25 SER A 424 GLY A 434 1 11 HELIX 26 26 ALA B 48 SER B 62 1 15 HELIX 27 27 SER B 62 ALA B 68 1 7 HELIX 28 28 PRO B 78 SER B 80 5 3 HELIX 29 29 ASP B 81 GLY B 91 1 11 HELIX 30 30 GLY B 104 ALA B 113 1 10 HELIX 31 31 LEU B 119 ASP B 126 1 8 HELIX 32 32 ASP B 126 THR B 131 1 6 HELIX 33 33 LEU B 134 ALA B 140 1 7 HELIX 34 34 LYS B 164 HIS B 170 1 7 HELIX 35 35 THR B 177 ALA B 191 1 15 HELIX 36 36 ILE B 203 GLY B 219 1 17 HELIX 37 37 PRO B 220 ASN B 228 1 9 HELIX 38 38 ASP B 230 GLY B 235 5 6 HELIX 39 39 ASP B 236 GLU B 252 1 17 HELIX 40 40 GLY B 258 VAL B 262 5 5 HELIX 41 41 GLY B 267 LYS B 275 1 9 HELIX 42 42 SER B 285 PHE B 295 1 11 HELIX 43 43 PHE B 295 ASP B 302 1 8 HELIX 44 44 ASN B 337 CYS B 348 1 12 HELIX 45 45 SER B 350 GLY B 361 1 12 HELIX 46 46 ALA B 369 SER B 376 5 8 HELIX 47 47 ASN B 378 ALA B 392 1 15 HELIX 48 48 SER B 398 VAL B 403 1 6 HELIX 49 49 ASP B 404 VAL B 420 1 17 HELIX 50 50 SER B 424 GLY B 434 1 11 SHEET 1 A 5 VAL A 72 ILE A 77 0 SHEET 2 A 5 ILE A 39 TYR A 44 1 N ALA A 41 O GLU A 75 SHEET 3 A 5 ILE A 98 ASN A 101 1 O ILE A 98 N MET A 42 SHEET 4 A 5 TYR A 328 VAL A 331 -1 O SER A 330 N PHE A 99 SHEET 5 A 5 ILE A 150 PRO A 151 -1 N ILE A 150 O TRP A 329 SHEET 1 B 2 SER A 142 LEU A 143 0 SHEET 2 B 2 HIS A 146 GLU A 147 -1 O HIS A 146 N LEU A 143 SHEET 1 C 4 THR A 194 ALA A 197 0 SHEET 2 C 4 ALA A 278 GLY A 284 1 O MET A 280 N ALA A 197 SHEET 3 C 4 GLN A 156 ASN A 163 -1 N LEU A 159 O MET A 283 SHEET 4 C 4 LEU A 303 CYS A 306 -1 O GLY A 304 N TYR A 162 SHEET 1 D 5 THR A 194 ALA A 197 0 SHEET 2 D 5 ALA A 278 GLY A 284 1 O MET A 280 N ALA A 197 SHEET 3 D 5 GLN A 156 ASN A 163 -1 N LEU A 159 O MET A 283 SHEET 4 D 5 VAL A 321 ASN A 324 -1 O VAL A 322 N VAL A 158 SHEET 5 D 5 PHE A 395 LEU A 397 1 O THR A 396 N VAL A 321 SHEET 1 E 5 VAL B 72 ILE B 77 0 SHEET 2 E 5 ILE B 39 TYR B 44 1 N ALA B 41 O GLU B 75 SHEET 3 E 5 ILE B 98 ASN B 101 1 O ILE B 98 N MET B 42 SHEET 4 E 5 TYR B 328 VAL B 331 -1 O SER B 330 N PHE B 99 SHEET 5 E 5 ILE B 150 PRO B 151 -1 N ILE B 150 O TRP B 329 SHEET 1 F 2 SER B 142 LEU B 143 0 SHEET 2 F 2 HIS B 146 GLU B 147 -1 O HIS B 146 N LEU B 143 SHEET 1 G 4 THR B 194 PHE B 196 0 SHEET 2 G 4 ALA B 278 GLY B 284 1 O MET B 280 N PRO B 195 SHEET 3 G 4 GLN B 156 ASN B 163 -1 N PHE B 161 O HIS B 281 SHEET 4 G 4 LEU B 303 CYS B 306 -1 O GLY B 304 N TYR B 162 SHEET 1 H 5 THR B 194 PHE B 196 0 SHEET 2 H 5 ALA B 278 GLY B 284 1 O MET B 280 N PRO B 195 SHEET 3 H 5 GLN B 156 ASN B 163 -1 N PHE B 161 O HIS B 281 SHEET 4 H 5 VAL B 321 ASN B 324 -1 O VAL B 322 N VAL B 158 SHEET 5 H 5 PHE B 395 LEU B 397 1 O THR B 396 N VAL B 321 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.42 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.42 CRYST1 103.672 163.157 42.931 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023293 0.00000