data_3VXF # _entry.id 3VXF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VXF RCSB RCSB095620 WWPDB D_1000095620 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VXE _pdbx_database_related.details 'X-ray crystallography of Human alpha-thrombin-bivalirudin complex at pD5.0, 100K' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VXF _pdbx_database_status.recvd_initial_deposition_date 2012-09-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yamada, T.' 1 ? 'Kurihara, K.' 2 ? 'Masumi, K.' 3 ? 'Tamada, T.' 4 ? 'Tomoyori, K.' 5 ? 'Ohnishi, Y.' 6 ? 'Tanaka, I.' 7 ? 'Kuroki, R.' 8 ? 'Niimura, N.' 9 ? # _citation.id primary _citation.title ;Neutron and X-ray crystallographic analysis of the human alpha-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex ; _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1834 _citation.page_first 1532 _citation.page_last 1538 _citation.year 2013 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23712263 _citation.pdbx_database_id_DOI 10.1016/j.bbapap.2013.05.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, T.' 1 ? primary 'Kurihara, K.' 2 ? primary 'Ohnishi, Y.' 3 ? primary 'Tamada, T.' 4 ? primary 'Tomoyori, K.' 5 ? primary 'Masumi, K.' 6 ? primary 'Tanaka, I.' 7 ? primary 'Kuroki, R.' 8 ? primary 'Niimura, N.' 9 ? # _cell.entry_id 3VXF _cell.length_a 80.998 _cell.length_b 107.800 _cell.length_c 45.888 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VXF _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn BIVALIRUDIN 1779.813 1 ? ? C-TERMINAL ? 4 polymer syn BIVALIRUDIN 419.498 1 ? ? N-TERMINAL ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 6 water nat water 18.015 158 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'ALPHA-THROMBIN LIGHT CHAIN' 2 'ALPHA-THROMBIN HEAVY CHAIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no no PGGGGNGDFEEIPEEYL PGGGGNGDFEEIPEEYL J ? 4 'polypeptide(L)' no yes '(DPN)PR' FPR I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 PRO n 3 2 GLY n 3 3 GLY n 3 4 GLY n 3 5 GLY n 3 6 ASN n 3 7 GLY n 3 8 ASP n 3 9 PHE n 3 10 GLU n 3 11 GLU n 3 12 ILE n 3 13 PRO n 3 14 GLU n 3 15 GLU n 3 16 TYR n 3 17 LEU n 4 1 DPN n 4 2 PRO n 4 3 ARG n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 3 1 sample ? ? unidentified ? 32644 'ENZYMATICALLY PRODUCED FROM BIVALIRUDIN DURING THE CRYSTALLIZATION' 4 1 sample ? ? unidentified ? 32644 'ENZYMATICALLY PRODUCED FROM BIVALIRUDIN DURING THE CRYSTALLIZATION' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? 3 PDB 3VXF 3VXF 3 ? ? ? 4 PDB 3VXF 3VXF 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VXF L 1 H 36 ? P00734 328 ? 363 ? 1 17 2 2 3VXF H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 3VXF J 1 ? 17 ? 3VXF 48 ? 64 ? 48 64 4 4 3VXF I 1 ? 3 ? 3VXF 1 ? 3 ? 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _exptl.entry_id _exptl.method _exptl.crystals_number 3VXF 'X-RAY DIFFRACTION' 1 3VXF 'NEUTRON DIFFRACTION' 1 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 2.78 55.70 ? ? ? 2 ? ? ? ? ? ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_details ;THE CRYSTAL WAS OBTAINED BY A SITTING DROP VAPOR DIFFUSION AFTER MACROSEEDING. 2% (W/V) TO 10% (W/V) PEG4000, 100MM SODIUM ACETATE PD5.0. THE INITIAL CONCENTRATION OF THROMBIN-BIVALIRUDIN COMPLEX WAS 5MG/ML, pH 5.00, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id _diffrn.pdbx_serial_crystal_experiment 1 298 ? 1 ? 2 298 ? 2 ? # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4r' 2009-06-13 'Bending magnet, monochromator, mirrors' 2 'IMAGE PLATE' BIX-4 2009-03-23 monochromator # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si(111)' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si(111)' ? neutron # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 2.6 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-6A' 'Photon Factory' BL-6A ? 1.0 2 'NUCLEAR REACTOR' 'JRR-3M BEAMLINE 1G-C' JRR-3M 1G-C ? 2.6 # loop_ _reflns.pdbx_diffrn_id _reflns.pdbx_ordinal _reflns.entry_id _reflns.observed_criterion_sigma_I _reflns.observed_criterion_sigma_F _reflns.d_resolution_low _reflns.d_resolution_high _reflns.number_obs _reflns.number_all _reflns.percent_possible_obs _reflns.pdbx_Rmerge_I_obs _reflns.pdbx_Rsym_value _reflns.pdbx_netI_over_sigmaI _reflns.B_iso_Wilson_estimate _reflns.pdbx_redundancy _reflns.R_free_details _reflns.limit_h_max _reflns.limit_h_min _reflns.limit_k_max _reflns.limit_k_min _reflns.limit_l_max _reflns.limit_l_min _reflns.observed_criterion_F_max _reflns.observed_criterion_F_min _reflns.pdbx_chi_squared _reflns.pdbx_scaling_rejects _reflns.pdbx_CC_half _reflns.pdbx_Rpim_I_all _reflns.pdbx_Rrim_I_all 1 1 3VXF -3 0 50 1.6 51182 51182 95.6 0.051 ? 34.5 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 2 3VXF 0 ? 100 2.8 8509 ? 80.0 0.134 ? 4.79 20.030 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_Rrim_I_all 1 1 1.60 1.66 97.1 0.332 ? 5.2 ? ? ? ? ? ? ? ? ? ? 1 2 1.66 1.72 97.3 0.243 ? 6.8 ? ? ? ? ? ? ? ? ? ? 1 3 1.72 1.80 97.6 0.173 ? 10.9 ? ? ? ? ? ? ? ? ? ? 1 4 1.80 1.90 97.6 0.125 ? 13.8 ? ? ? ? ? ? ? ? ? ? 1 5 1.90 2.02 98.1 0.088 ? 17.9 ? ? ? ? ? ? ? ? ? ? 1 6 2.02 2.17 98.5 0.068 ? 22.7 ? ? ? ? ? ? ? ? ? ? 1 7 2.17 2.39 98.9 0.056 ? 29.1 ? ? ? ? ? ? ? ? ? ? 1 8 2.39 2.74 98.8 0.047 ? 39.7 ? ? ? ? ? ? ? ? ? ? 1 9 2.74 3.45 98.0 0.040 ? 44.9 ? ? ? ? ? ? ? ? ? ? 1 10 3.45 50.0 75.3 0.036 ? 45.6 ? ? ? ? ? ? ? ? ? ? 2 11 2.80 2.90 70.1 0.33 ? 1.81 ? ? ? ? ? ? ? ? ? ? # loop_ _refine.pdbx_refine_id _refine.entry_id _refine.pdbx_diffrn_id _refine.pdbx_TLS_residual_ADP_flag _refine.ls_number_reflns_obs _refine.ls_number_reflns_all _refine.pdbx_ls_sigma_I _refine.pdbx_ls_sigma_F _refine.pdbx_data_cutoff_high_absF _refine.pdbx_data_cutoff_low_absF _refine.pdbx_data_cutoff_high_rms_absF _refine.ls_d_res_low _refine.ls_d_res_high _refine.ls_percent_reflns_obs _refine.ls_R_factor_obs _refine.ls_R_factor_all _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free _refine.ls_R_factor_R_free_error _refine.ls_R_factor_R_free_error_details _refine.ls_percent_reflns_R_free _refine.ls_number_reflns_R_free _refine.ls_number_parameters _refine.ls_number_restraints _refine.occupancy_min _refine.occupancy_max _refine.correlation_coeff_Fo_to_Fc _refine.correlation_coeff_Fo_to_Fc_free _refine.B_iso_mean _refine.aniso_B[1][1] _refine.aniso_B[2][2] _refine.aniso_B[3][3] _refine.aniso_B[1][2] _refine.aniso_B[1][3] _refine.aniso_B[2][3] _refine.solvent_model_details _refine.solvent_model_param_ksol _refine.solvent_model_param_bsol _refine.pdbx_solvent_vdw_probe_radii _refine.pdbx_solvent_ion_probe_radii _refine.pdbx_solvent_shrinkage_radii _refine.pdbx_ls_cross_valid_method _refine.details _refine.pdbx_starting_model _refine.pdbx_method_to_determine_struct _refine.pdbx_isotropic_thermal_model _refine.pdbx_stereochemistry_target_values _refine.pdbx_stereochem_target_val_spec_case _refine.pdbx_R_Free_selection_details _refine.pdbx_overall_ESU_R_Free _refine.overall_SU_ML _refine.pdbx_overall_phase_error _refine.overall_SU_B _refine.overall_SU_R_Cruickshank_DPI _refine.pdbx_overall_SU_R_free_Cruickshank_DPI _refine.pdbx_overall_SU_R_Blow_DPI _refine.pdbx_overall_SU_R_free_Blow_DPI _refine.overall_FOM_work_R_set _refine.ls_redundancy_reflns_obs _refine.B_iso_min _refine.B_iso_max _refine.overall_SU_R_free _refine.ls_wR_factor_R_free _refine.ls_wR_factor_R_work _refine.overall_FOM_free_R_set _refine.pdbx_overall_ESU_R 'X-RAY DIFFRACTION' 3VXF 1 ? 51136 51136 ? 1.35 ? ? ? 29.227 1.602 95.32 0.1619 ? 0.1609 0.1842 ? ? 3.72 1902 ? ? ? ? ? ? 17.8990 -1.0167 2.9256 -1.9089 0.0000 0.0000 -0.0000 'FLAT BULK SOLVENT MODEL' 0.425 53.565 1.40 ? 1.37 ? ? ? ? ? ML ? ? ? 0.16 16.97 ? ? ? ? ? 0.8582 ? ? ? ? ? ? ? ? 'NEUTRON DIFFRACTION' 3VXF 2 ? 8072 ? ? . ? ? ? 44.873 2.752 73.72 0.1855 ? 0.1828 0.2339 ? ? 5.00 404 ? ? ? ? ? ? 15.6030 0.7967 -2.7111 1.9144 -0.0000 -0.0000 0.0000 'FLAT BULK SOLVENT MODEL' 0.558 15.603 1.10 ? 1.01 ? ? ? ? ? ML ? ? ? 0.28 21.09 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2357 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 2529 _refine_hist.d_res_high 1.602 _refine_hist.d_res_low 29.227 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.016 ? ? 5140 'NEUTRON DIFFRACTION' ? f_angle_d 2.044 ? ? 9130 'NEUTRON DIFFRACTION' ? f_dihedral_angle_d 17.995 ? ? 1339 'NEUTRON DIFFRACTION' ? f_chiral_restr 0.117 ? ? 350 'NEUTRON DIFFRACTION' ? f_plane_restr 0.010 ? ? 994 'NEUTRON DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_obs 'X-RAY DIFFRACTION' . 1.6020 1.6593 4768 0.1973 94.00 0.2136 . . 170 . . . . . 'X-RAY DIFFRACTION' . 1.6593 1.7257 4972 0.1769 97.00 0.1875 . . 181 . . . . . 'X-RAY DIFFRACTION' . 1.7257 1.8042 5002 0.1676 98.00 0.2174 . . 182 . . . . . 'X-RAY DIFFRACTION' . 1.8042 1.8993 5008 0.1630 98.00 0.2017 . . 182 . . . . . 'X-RAY DIFFRACTION' . 1.8993 2.0183 5010 0.1524 98.00 0.1898 . . 183 . . . . . 'X-RAY DIFFRACTION' . 2.0183 2.1741 5077 0.1480 98.00 0.1775 . . 185 . . . . . 'X-RAY DIFFRACTION' . 2.1741 2.3928 5112 0.1474 99.00 0.1665 . . 186 . . . . . 'X-RAY DIFFRACTION' . 2.3928 2.7388 5130 0.1538 99.00 0.1625 . . 186 . . . . . 'X-RAY DIFFRACTION' . 2.7388 3.4498 5083 0.1613 98.00 0.1914 . . 241 . . . . . 'X-RAY DIFFRACTION' . 3.4498 29.2321 4072 0.1710 76.00 0.1850 . . 206 . . . . . 'NEUTRON DIFFRACTION' . 2.7523 3.1505 2044 0.1940 60.00 0.2738 . . 106 . . . . . 'NEUTRON DIFFRACTION' . 3.1505 3.9689 2705 0.1785 79.00 0.2338 . . 141 . . . . . 'NEUTRON DIFFRACTION' . 3.9689 44.8787 2919 0.1810 81.00 0.2171 . . 157 . . . . . # _struct.entry_id 3VXF _struct.title 'X/N Joint refinement of Human alpha-thrombin-Bivalirudin complex PD5' _struct.pdbx_descriptor 'Thrombin light chain (E.C.3.4.21.5), Thrombin heavy chain (E.C.3.4.21.5), BIVALIRUDIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VXF _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'SERINE PROTEASE, HYDROLYSIS, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? I N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 15 ? SER A 19 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P2 2 THR A 24 B TYR A 32 J THR L 14 TYR L 14 1 ? 9 HELX_P HELX_P3 3 ALA B 41 ? CYS B 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P4 4 PRO B 48 B ASP B 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P5 5 THR B 55 I ASN B 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P8 8 LYS B 191 ? GLY B 195 C LYS H 185 GLY H 186 5 ? 5 HELX_P HELX_P9 9 LEU B 246 ? PHE B 257 ? LEU H 234 PHE H 245 1 ? 12 HELX_P HELX_P10 10 PRO C 13 ? LEU C 17 ? PRO J 60 LEU J 64 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale one ? B ASN 53 ND2 ? G ? 1_555 E NAG . C1 ? ? H ASN 60 H NAG 300 1_555 ? ? ? ? ? ? ? 1.741 ? N-Glycosylation covale2 covale both ? D DPN 1 C ? ? ? 1_555 D PRO 2 N ? ? I DPN 1 I PRO 2 1_555 ? ? ? ? ? ? ? 1.350 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER H 20 ASP H 21 A 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 A 3 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 A 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 A 5 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 A 6 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 A 7 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 B 1 LYS B 77 ? SER B 79 ? LYS H 81 SER H 83 B 2 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 B 3 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 B 4 GLU B 25 ? LEU B 32 ? GLU H 39 LEU H 46 B 5 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 6 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 7 LEU B 81 ? ILE B 86 ? LEU H 85 ILE H 90 C 1 LEU B 46 ? TYR B 47 A LEU H 60 TYR H 60 C 2 LYS B 52 F ASN B 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER H 20 O VAL B 162 ? O VAL H 157 A 2 3 O VAL B 163 ? O VAL H 158 N VAL B 138 ? N VAL H 138 A 3 4 N ARG B 137 ? N ARG H 137 O VAL B 210 ? O VAL H 200 A 4 5 N MET B 211 ? N MET H 201 O TYR B 220 ? O TYR H 208 A 5 6 N TRP B 227 ? N TRP H 215 O PHE B 239 ? O PHE H 227 A 6 7 O TYR B 240 ? O TYR H 228 N PHE B 186 ? N PHE H 181 B 1 2 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 B 2 3 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 B 3 4 N LEU B 18 ? N LEU H 33 O CYS B 28 ? O CYS H 42 B 4 5 N SER B 31 ? N SER H 45 O LEU B 39 ? O LEU H 53 B 5 6 N THR B 40 ? N THR H 54 O ALA B 101 ? O ALA H 104 B 6 7 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 C 1 2 N TYR B 47 A N TYR H 60 O LYS B 52 F O LYS H 60 # _database_PDB_matrix.entry_id 3VXF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VXF _atom_sites.fract_transf_matrix[1][1] 0.012346 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021792 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C D H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? L H n A 1 2 PHE 2 1 ? ? ? L G n A 1 3 GLY 3 1 ? ? ? L F n A 1 4 SER 4 1 ? ? ? L E n A 1 5 GLY 5 1 ? ? ? L D n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 15 ? ? ? L . n A 1 35 GLY 35 16 ? ? ? L . n A 1 36 ARG 36 17 ? ? ? L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 149 149 THR THR H . n B 2 150 ALA 150 149 149 ALA ALA H A n B 2 151 ASN 151 149 149 ASN ASN H B n B 2 152 VAL 152 149 149 VAL VAL H C n B 2 153 GLY 153 149 149 GLY GLY H D n B 2 154 LYS 154 149 149 LYS LYS H E n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 ? ? ? H . n B 2 259 GLU 259 247 ? ? ? H . n C 3 1 PRO 1 48 ? ? ? J . n C 3 2 GLY 2 49 ? ? ? J . n C 3 3 GLY 3 50 ? ? ? J . n C 3 4 GLY 4 51 ? ? ? J . n C 3 5 GLY 5 52 ? ? ? J . n C 3 6 ASN 6 53 ? ? ? J . n C 3 7 GLY 7 54 ? ? ? J . n C 3 8 ASP 8 55 55 ASP ASP J . n C 3 9 PHE 9 56 56 PHE PHE J . n C 3 10 GLU 10 57 57 GLU GLU J . n C 3 11 GLU 11 58 58 GLU GLU J . n C 3 12 ILE 12 59 59 ILE ILE J . n C 3 13 PRO 13 60 60 PRO PRO J . n C 3 14 GLU 14 61 61 GLU GLU J . n C 3 15 GLU 15 62 62 GLU GLU J . n C 3 16 TYR 16 63 63 TYR TYR J . n C 3 17 LEU 17 64 64 LEU LEU J . n D 4 1 DPN 1 1 1 DPN DPN I . n D 4 2 PRO 2 2 2 PRO PRO I . n D 4 3 ARG 3 3 3 ARG ARG I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG 1 300 300 NAG NAG H . F 6 DOD 1 101 1020 DOD DOD L . F 6 DOD 2 102 1029 DOD DOD L . F 6 DOD 3 103 1041 DOD DOD L . F 6 DOD 4 104 1044 DOD DOD L . F 6 DOD 5 105 2001 DOD DOD L . F 6 DOD 6 106 2023 DOD DOD L . F 6 DOD 7 107 2024 DOD DOD L . F 6 DOD 8 108 3018 DOD DOD L . F 6 DOD 9 109 3028 DOD DOD L . F 6 DOD 10 110 3029 DOD DOD L . G 6 DOD 1 1001 1001 DOD DOD H . G 6 DOD 2 1002 1002 DOD DOD H . G 6 DOD 3 1003 1003 DOD DOD H . G 6 DOD 4 1004 1004 DOD DOD H . G 6 DOD 5 1005 1005 DOD DOD H . G 6 DOD 6 1006 1006 DOD DOD H . G 6 DOD 7 1007 1007 DOD DOD H . G 6 DOD 8 1008 1008 DOD DOD H . G 6 DOD 9 1009 1009 DOD DOD H . G 6 DOD 10 1010 1010 DOD DOD H . G 6 DOD 11 1011 1011 DOD DOD H . G 6 DOD 12 1012 1012 DOD DOD H . G 6 DOD 13 1013 1013 DOD DOD H . G 6 DOD 14 1014 1014 DOD DOD H . G 6 DOD 15 1015 1015 DOD DOD H . G 6 DOD 16 1016 1016 DOD DOD H . G 6 DOD 17 1017 1017 DOD DOD H . G 6 DOD 18 1018 1018 DOD DOD H . G 6 DOD 19 1019 1019 DOD DOD H . G 6 DOD 20 1020 1022 DOD DOD H . G 6 DOD 21 1021 1023 DOD DOD H . G 6 DOD 22 1022 1024 DOD DOD H . G 6 DOD 23 1023 1025 DOD DOD H . G 6 DOD 24 1024 1026 DOD DOD H . G 6 DOD 25 1025 1027 DOD DOD H . G 6 DOD 26 1026 1028 DOD DOD H . G 6 DOD 27 1027 1030 DOD DOD H . G 6 DOD 28 1028 1031 DOD DOD H . G 6 DOD 29 1029 1032 DOD DOD H . G 6 DOD 30 1030 1033 DOD DOD H . G 6 DOD 31 1031 1034 DOD DOD H . G 6 DOD 32 1032 1035 DOD DOD H . G 6 DOD 33 1033 1036 DOD DOD H . G 6 DOD 34 1034 1037 DOD DOD H . G 6 DOD 35 1035 1038 DOD DOD H . G 6 DOD 36 1036 1039 DOD DOD H . G 6 DOD 37 1037 1040 DOD DOD H . G 6 DOD 38 1038 1042 DOD DOD H . G 6 DOD 39 1039 1043 DOD DOD H . G 6 DOD 40 1040 1045 DOD DOD H . G 6 DOD 41 1041 1046 DOD DOD H . G 6 DOD 42 1042 1047 DOD DOD H . G 6 DOD 43 1043 1048 DOD DOD H . G 6 DOD 44 1044 1049 DOD DOD H . G 6 DOD 45 1045 1050 DOD DOD H . G 6 DOD 46 1046 1051 DOD DOD H . G 6 DOD 47 1047 1052 DOD DOD H . G 6 DOD 48 1048 1053 DOD DOD H . G 6 DOD 49 1049 1054 DOD DOD H . G 6 DOD 50 1050 1055 DOD DOD H . G 6 DOD 51 1051 1056 DOD DOD H . G 6 DOD 52 1052 1058 DOD DOD H . G 6 DOD 53 1053 1059 DOD DOD H . G 6 DOD 54 1054 1062 DOD DOD H . G 6 DOD 55 1055 1063 DOD DOD H . G 6 DOD 56 1056 1065 DOD DOD H . G 6 DOD 57 1057 1066 DOD DOD H . G 6 DOD 58 1058 1067 DOD DOD H . G 6 DOD 59 1059 1068 DOD DOD H . G 6 DOD 60 1060 1069 DOD DOD H . G 6 DOD 61 1061 1070 DOD DOD H . G 6 DOD 62 1062 1071 DOD DOD H . G 6 DOD 63 1063 1073 DOD DOD H . G 6 DOD 64 1064 1074 DOD DOD H . G 6 DOD 65 1065 1075 DOD DOD H . G 6 DOD 66 1066 2002 DOD DOD H . G 6 DOD 67 1067 2003 DOD DOD H . G 6 DOD 68 1068 2004 DOD DOD H . G 6 DOD 69 1069 2005 DOD DOD H . G 6 DOD 70 1070 2006 DOD DOD H . G 6 DOD 71 1071 2007 DOD DOD H . G 6 DOD 72 1072 2008 DOD DOD H . G 6 DOD 73 1073 2009 DOD DOD H . G 6 DOD 74 1074 2010 DOD DOD H . G 6 DOD 75 1075 2011 DOD DOD H . G 6 DOD 76 1076 2012 DOD DOD H . G 6 DOD 77 1077 2013 DOD DOD H . G 6 DOD 78 1078 2014 DOD DOD H . G 6 DOD 79 1079 2015 DOD DOD H . G 6 DOD 80 1080 2016 DOD DOD H . G 6 DOD 81 1081 2017 DOD DOD H . G 6 DOD 82 1082 2018 DOD DOD H . G 6 DOD 83 1083 2019 DOD DOD H . G 6 DOD 84 1084 2020 DOD DOD H . G 6 DOD 85 1085 2022 DOD DOD H . G 6 DOD 86 1086 2025 DOD DOD H . G 6 DOD 87 1087 2026 DOD DOD H . G 6 DOD 88 1088 2027 DOD DOD H . G 6 DOD 89 1089 2028 DOD DOD H . G 6 DOD 90 1090 2029 DOD DOD H . G 6 DOD 91 1091 2030 DOD DOD H . G 6 DOD 92 1092 2031 DOD DOD H . G 6 DOD 93 1093 2032 DOD DOD H . G 6 DOD 94 1094 2033 DOD DOD H . G 6 DOD 95 1095 2034 DOD DOD H . G 6 DOD 96 1096 2035 DOD DOD H . G 6 DOD 97 1097 2036 DOD DOD H . G 6 DOD 98 1098 2037 DOD DOD H . G 6 DOD 99 1099 2038 DOD DOD H . G 6 DOD 100 1100 2039 DOD DOD H . G 6 DOD 101 1101 3001 DOD DOD H . G 6 DOD 102 1102 3002 DOD DOD H . G 6 DOD 103 1103 3003 DOD DOD H . G 6 DOD 104 1104 3004 DOD DOD H . G 6 DOD 105 1105 3005 DOD DOD H . G 6 DOD 106 1106 3006 DOD DOD H . G 6 DOD 107 1107 3007 DOD DOD H . G 6 DOD 108 1108 3008 DOD DOD H . G 6 DOD 109 1109 3009 DOD DOD H . G 6 DOD 110 1110 3010 DOD DOD H . G 6 DOD 111 1111 3011 DOD DOD H . G 6 DOD 112 1112 3012 DOD DOD H . G 6 DOD 113 1113 3013 DOD DOD H . G 6 DOD 114 1114 3014 DOD DOD H . G 6 DOD 115 1115 3016 DOD DOD H . G 6 DOD 116 1116 3017 DOD DOD H . G 6 DOD 117 1117 3019 DOD DOD H . G 6 DOD 118 1118 3020 DOD DOD H . G 6 DOD 119 1119 3021 DOD DOD H . G 6 DOD 120 1120 3022 DOD DOD H . G 6 DOD 121 1121 3023 DOD DOD H . G 6 DOD 122 1122 3024 DOD DOD H . G 6 DOD 123 1123 3025 DOD DOD H . G 6 DOD 124 1124 3026 DOD DOD H . G 6 DOD 125 1125 3027 DOD DOD H . G 6 DOD 126 1126 3030 DOD DOD H . G 6 DOD 127 1127 3031 DOD DOD H . G 6 DOD 128 1128 3032 DOD DOD H . G 6 DOD 129 1129 3033 DOD DOD H . G 6 DOD 130 1130 3034 DOD DOD H . G 6 DOD 131 1131 3035 DOD DOD H . G 6 DOD 132 1132 3036 DOD DOD H . G 6 DOD 133 1133 3037 DOD DOD H . G 6 DOD 134 1134 3038 DOD DOD H . G 6 DOD 135 1135 3039 DOD DOD H . G 6 DOD 136 1136 3040 DOD DOD H . G 6 DOD 137 1137 3041 DOD DOD H . G 6 DOD 138 1138 3042 DOD DOD H . G 6 DOD 139 1139 3043 DOD DOD H . G 6 DOD 140 1140 3044 DOD DOD H . G 6 DOD 141 1141 3045 DOD DOD H . G 6 DOD 142 1142 3055 DOD DOD H . G 6 DOD 143 1143 1060 DOD DOD H . G 6 DOD 144 1144 1061 DOD DOD H . H 6 DOD 1 101 1021 DOD DOD J . H 6 DOD 2 102 3015 DOD DOD J . I 6 DOD 1 101 1064 DOD DOD I . I 6 DOD 2 102 2021 DOD DOD I . # loop_ _pdbx_molecule_features.prd_id _pdbx_molecule_features.name _pdbx_molecule_features.type _pdbx_molecule_features.class _pdbx_molecule_features.details PRD_001145 'BIVALIRUDIN N-terminus fragment' Peptide-like 'Thrombin inhibitor' ? PRD_001148 'BIVALIRUDIN C-terminus fragment' Peptide-like 'Thrombin inhibitor' ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_001145 C 2 PRD_001148 D # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 60 _pdbx_struct_mod_residue.PDB_ins_code G _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4510 ? 1 MORE -23 ? 1 'SSA (A^2)' 13120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id H _pdbx_struct_special_symmetry.auth_comp_id DOD _pdbx_struct_special_symmetry.auth_seq_id 1100 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id DOD _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-04 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-11-28 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' diffrn_source 3 3 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_nonpoly 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 2 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 3 'Structure model' '_diffrn_source.type' 4 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 5 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 6 4 'Structure model' '_chem_comp.name' 7 4 'Structure model' '_chem_comp.type' 8 4 'Structure model' '_entity.pdbx_description' 9 4 'Structure model' '_pdbx_entity_nonpoly.name' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 4 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 13 4 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 14 4 'Structure model' '_struct_conn.pdbx_role' 15 4 'Structure model' '_struct_conn.pdbx_value_order' 16 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE: DEV_663)' ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? # _pdbx_entry_details.entry_id 3VXF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;BIVALIRUDIN IS HYDROLYZED AT ARG3-PRO4 BOND DURING CRYSTALLIZATION AND BECOMES TWO CHAINS. THE COMPLETE SEQUENCE OF BIVALIRUDIN IS (DPN)PRPGGGGNGDFEEIPEEYL. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OXT I ARG 3 ? ? O I DOD 102 ? ? 1.95 2 1 OD1 H ASP 186 A ? O H DOD 1113 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH2 L ARG 14 D ? 117.06 120.30 -3.24 0.50 N 2 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD1 H ASP 21 ? ? 125.49 118.30 7.19 0.90 N 3 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH2 H ARG 35 ? ? 116.93 120.30 -3.37 0.50 N 4 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 117.01 120.30 -3.29 0.50 N 5 1 CD H LYS 186 D ? CE H LYS 186 D ? NZ H LYS 186 D ? 126.55 111.70 14.85 2.30 N 6 1 CD H ARG 221 A ? NE H ARG 221 A ? CZ H ARG 221 A ? 133.38 123.60 9.78 1.40 N 7 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH1 H ARG 221 A ? 114.79 120.30 -5.51 0.50 N 8 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH2 H ARG 221 A ? 130.14 120.30 9.84 0.50 N 9 1 NE I ARG 3 ? ? CZ I ARG 3 ? ? NH2 I ARG 3 ? ? 115.69 120.30 -4.61 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 7 ? ? -129.52 -86.15 2 1 ASN H 60 G ? -154.14 87.28 3 1 HIS H 71 ? ? -131.20 -60.92 4 1 ILE H 79 ? ? -122.66 -62.87 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 L GLU 1 C CG ? A GLU 6 CG 2 1 Y 1 L GLU 1 C CD ? A GLU 6 CD 3 1 Y 1 L GLU 1 C OE1 ? A GLU 6 OE1 4 1 Y 1 L GLU 1 C OE2 ? A GLU 6 OE2 5 1 Y 1 L LYS 9 ? CD ? A LYS 17 CD 6 1 Y 1 L LYS 9 ? CE ? A LYS 17 CE 7 1 Y 1 L LYS 9 ? NZ ? A LYS 17 NZ 8 1 Y 1 L LYS 14 A CD ? A LYS 23 CD 9 1 Y 1 L LYS 14 A CE ? A LYS 23 CE 10 1 Y 1 L LYS 14 A NZ ? A LYS 23 NZ 11 1 Y 1 L ILE 14 K CA ? A ILE 33 CA 12 1 Y 1 L ILE 14 K C ? A ILE 33 C 13 1 Y 1 L ILE 14 K O ? A ILE 33 O 14 1 Y 1 L ILE 14 K CB ? A ILE 33 CB 15 1 Y 1 L ILE 14 K CG1 ? A ILE 33 CG1 16 1 Y 1 L ILE 14 K CG2 ? A ILE 33 CG2 17 1 Y 1 L ILE 14 K CD1 ? A ILE 33 CD1 18 1 Y 1 H ASN 62 ? OD1 ? B ASN 57 OD1 19 1 Y 1 H ASN 62 ? ND2 ? B ASN 57 ND2 20 1 Y 1 H ARG 75 ? CD ? B ARG 70 CD 21 1 Y 1 H ARG 75 ? NE ? B ARG 70 NE 22 1 Y 1 H ARG 75 ? CZ ? B ARG 70 CZ 23 1 Y 1 H ARG 75 ? NH1 ? B ARG 70 NH1 24 1 Y 1 H ARG 75 ? NH2 ? B ARG 70 NH2 25 1 Y 1 H LYS 87 ? CG ? B LYS 83 CG 26 1 Y 1 H LYS 87 ? CD ? B LYS 83 CD 27 1 Y 1 H LYS 87 ? CE ? B LYS 83 CE 28 1 Y 1 H LYS 87 ? NZ ? B LYS 83 NZ 29 1 Y 1 H ARG 97 ? CG ? B ARG 93 CG 30 1 Y 1 H ARG 97 ? CD ? B ARG 93 CD 31 1 Y 1 H ARG 97 ? NE ? B ARG 93 NE 32 1 Y 1 H ARG 97 ? CZ ? B ARG 93 CZ 33 1 Y 1 H ARG 97 ? NH1 ? B ARG 93 NH1 34 1 Y 1 H ARG 97 ? NH2 ? B ARG 93 NH2 35 1 Y 1 H LYS 110 ? CG ? B LYS 107 CG 36 1 Y 1 H LYS 110 ? CD ? B LYS 107 CD 37 1 Y 1 H LYS 110 ? CE ? B LYS 107 CE 38 1 Y 1 H LYS 110 ? NZ ? B LYS 107 NZ 39 1 Y 1 H GLU 127 ? CG ? B GLU 124 CG 40 1 Y 1 H GLU 127 ? CD ? B GLU 124 CD 41 1 Y 1 H GLU 127 ? OE1 ? B GLU 124 OE1 42 1 Y 1 H GLU 127 ? OE2 ? B GLU 124 OE2 43 1 Y 1 H LYS 149 E CG ? B LYS 154 CG 44 1 Y 1 H LYS 149 E CD ? B LYS 154 CD 45 1 Y 1 H LYS 149 E CE ? B LYS 154 CE 46 1 Y 1 H LYS 149 E NZ ? B LYS 154 NZ 47 1 Y 1 H ARG 233 ? NE ? B ARG 245 NE 48 1 Y 1 H ARG 233 ? CZ ? B ARG 245 CZ 49 1 Y 1 H ARG 233 ? NH1 ? B ARG 245 NH1 50 1 Y 1 H ARG 233 ? NH2 ? B ARG 245 NH2 51 1 Y 1 H LYS 236 ? CG ? B LYS 248 CG 52 1 Y 1 H LYS 236 ? CD ? B LYS 248 CD 53 1 Y 1 H LYS 236 ? CE ? B LYS 248 CE 54 1 Y 1 H LYS 236 ? NZ ? B LYS 248 NZ 55 1 Y 1 H LYS 240 ? CD ? B LYS 252 CD 56 1 Y 1 H LYS 240 ? CE ? B LYS 252 CE 57 1 Y 1 H LYS 240 ? NZ ? B LYS 252 NZ 58 1 Y 1 H GLN 244 ? CD ? B GLN 256 CD 59 1 Y 1 H GLN 244 ? OE1 ? B GLN 256 OE1 60 1 Y 1 H GLN 244 ? NE2 ? B GLN 256 NE2 61 1 Y 1 J ASP 55 ? CG ? C ASP 8 CG 62 1 Y 1 J ASP 55 ? OD1 ? C ASP 8 OD1 63 1 Y 1 J ASP 55 ? OD2 ? C ASP 8 OD2 64 1 Y 1 J GLU 58 ? CG ? C GLU 11 CG 65 1 Y 1 J GLU 58 ? CD ? C GLU 11 CD 66 1 Y 1 J GLU 58 ? OE1 ? C GLU 11 OE1 67 1 Y 1 J GLU 58 ? OE2 ? C GLU 11 OE2 68 1 Y 1 J LEU 64 ? C ? C LEU 17 C 69 1 Y 1 J LEU 64 ? O ? C LEU 17 O 70 1 Y 1 J LEU 64 ? CB ? C LEU 17 CB 71 1 Y 1 J LEU 64 ? CG ? C LEU 17 CG 72 1 Y 1 J LEU 64 ? CD1 ? C LEU 17 CD1 73 1 Y 1 J LEU 64 ? CD2 ? C LEU 17 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR 1 H A THR 1 2 1 Y 1 L PHE 1 G A PHE 2 3 1 Y 1 L GLY 1 F A GLY 3 4 1 Y 1 L SER 1 E A SER 4 5 1 Y 1 L GLY 1 D A GLY 5 6 1 Y 1 L ASP 15 ? A ASP 34 7 1 Y 1 L GLY 16 ? A GLY 35 8 1 Y 1 L ARG 17 ? A ARG 36 9 1 Y 1 H GLY 246 ? B GLY 258 10 1 Y 1 H GLU 247 ? B GLU 259 11 1 Y 1 J PRO 48 ? C PRO 1 12 1 Y 1 J GLY 49 ? C GLY 2 13 1 Y 1 J GLY 50 ? C GLY 3 14 1 Y 1 J GLY 51 ? C GLY 4 15 1 Y 1 J GLY 52 ? C GLY 5 16 1 Y 1 J ASN 53 ? C ASN 6 17 1 Y 1 J GLY 54 ? C GLY 7 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 water DOD #