HEADER OXIDOREDUCTASE 09-OCT-12 3VZ1 TITLE STRUCTURAL INSIGHTS INTO SUBSTRATE AND COFACTOR SELELCTION BY SP2771 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS; SOURCE 3 ORGANISM_TAXID: 32049; SOURCE 4 STRAIN: ATCC 27264 / PCC 7002 / PR-6; SOURCE 5 GENE: SYNPCC7002_A2771; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUBSTRATE SELECTION, COFACTOR PREFERENCE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,Z.YUAN,B.YIN,D.WEI REVDAT 2 08-NOV-23 3VZ1 1 SEQADV REVDAT 1 10-JUL-13 3VZ1 0 JRNL AUTH Z.YUAN,B.YIN,D.WEI,Y.A.YUAN JRNL TITL STRUCTURAL BASIS FOR COFACTOR AND SUBSTRATE SELECTION BY JRNL TITL 2 CYANOBACTERIUM SUCCINIC SEMIALDEHYDE DEHYDROGENASE JRNL REF J.STRUCT.BIOL. V. 182 125 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23500184 JRNL DOI 10.1016/J.JSB.2013.03.001 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 48792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7028 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9552 ; 1.385 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 902 ; 6.352 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;36.348 ;24.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;14.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1086 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5350 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3511 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4858 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 571 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4654 ; 0.699 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7216 ; 1.124 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2708 ; 2.145 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2336 ; 3.429 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4578 122.6874 62.8366 REMARK 3 T TENSOR REMARK 3 T11: -0.0616 T22: -0.0624 REMARK 3 T33: -0.0492 T12: 0.0038 REMARK 3 T13: 0.0158 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1682 L22: 0.5083 REMARK 3 L33: 0.3903 L12: 0.1248 REMARK 3 L13: 0.0167 L23: -0.1716 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0207 S13: 0.0300 REMARK 3 S21: 0.0735 S22: 0.0078 S23: 0.0439 REMARK 3 S31: -0.0070 S32: 0.0096 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 454 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0841 115.1934 27.5972 REMARK 3 T TENSOR REMARK 3 T11: -0.0551 T22: -0.0606 REMARK 3 T33: -0.0514 T12: -0.0081 REMARK 3 T13: 0.0006 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.2111 L22: 0.4056 REMARK 3 L33: 0.4026 L12: -0.0267 REMARK 3 L13: 0.0420 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0175 S13: -0.0233 REMARK 3 S21: -0.0613 S22: 0.0204 S23: 0.0305 REMARK 3 S31: -0.0245 S32: 0.0110 S33: -0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3JZ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME, TASCIMATE, HEPES, PH REMARK 280 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.49300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.26650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.81300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.26650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.49300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.81300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 262 O HOH A 708 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 372 O HOH B 849 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 204 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 254 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 229 -161.45 -113.65 REMARK 500 ALA A 362 159.17 177.66 REMARK 500 LEU A 387 -80.69 -85.66 REMARK 500 LYS A 429 -140.29 45.85 REMARK 500 LEU A 437 166.12 73.69 REMARK 500 PHE A 445 55.72 -109.82 REMARK 500 LEU B 229 -161.07 -111.92 REMARK 500 PHE B 361 67.92 -100.76 REMARK 500 LEU B 387 -80.74 -89.90 REMARK 500 THR B 393 143.98 -172.22 REMARK 500 LYS B 429 -140.70 44.92 REMARK 500 LEU B 437 170.78 70.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VZ0 RELATED DB: PDB REMARK 900 RELATED ID: 3VZ2 RELATED DB: PDB REMARK 900 RELATED ID: 3VZ3 RELATED DB: PDB DBREF 3VZ1 A 1 454 UNP B1XMM6 B1XMM6_SYNP2 1 454 DBREF 3VZ1 B 1 454 UNP B1XMM6 B1XMM6_SYNP2 1 454 SEQADV 3VZ1 GLY A -2 UNP B1XMM6 EXPRESSION TAG SEQADV 3VZ1 SER A -1 UNP B1XMM6 EXPRESSION TAG SEQADV 3VZ1 HIS A 0 UNP B1XMM6 EXPRESSION TAG SEQADV 3VZ1 GLY B -2 UNP B1XMM6 EXPRESSION TAG SEQADV 3VZ1 SER B -1 UNP B1XMM6 EXPRESSION TAG SEQADV 3VZ1 HIS B 0 UNP B1XMM6 EXPRESSION TAG SEQRES 1 A 457 GLY SER HIS MET ALA ILE ALA THR ILE ASN PRO THR THR SEQRES 2 A 457 GLY GLU ILE CYS GLN ARG PHE LYS ALA LEU THR PRO ALA SEQRES 3 A 457 GLU ILE ASP ALA LYS LEU ALA LYS ALA GLN GLU ALA PHE SEQRES 4 A 457 GLN ALA TYR ARG ARG THR SER PHE SER GLN ARG ARG GLN SEQRES 5 A 457 TRP LEU GLU ASN ALA ALA ALA ILE LEU GLU ARG ASP THR SEQRES 6 A 457 SER LYS PHE ALA GLU ILE MET THR THR GLU MET GLY LYS SEQRES 7 A 457 THR HIS GLN SER ALA ILE ALA GLU ALA GLU LYS SER ALA SEQRES 8 A 457 LEU VAL CYS ARG TYR TYR ALA GLU HIS GLY GLU GLN PHE SEQRES 9 A 457 LEU ALA ASN GLU TYR THR GLU THR GLN ALA THR GLU SER SEQRES 10 A 457 TYR VAL CYS TYR GLN PRO LEU GLY ILE LEU LEU ALA VAL SEQRES 11 A 457 MET PRO TRP ASN PHE PRO PHE TRP GLN VAL PHE ARG PHE SEQRES 12 A 457 ALA ALA PRO ALA LEU MET ALA GLY ASN VAL ALA VAL LEU SEQRES 13 A 457 LYS HIS ALA SER ASN VAL PRO GLN CYS ALA LEU ALA VAL SEQRES 14 A 457 GLU ALA ILE LEU GLU ALA ALA GLY PHE PRO GLU GLY VAL SEQRES 15 A 457 PHE GLN THR LEU LEU ILE GLY ALA SER GLN VAL GLU GLN SEQRES 16 A 457 VAL ILE LYS ASP PRO ARG VAL LYS ALA ALA THR LEU THR SEQRES 17 A 457 GLY SER GLU PRO ALA GLY ALA SER LEU ALA SER LEU ALA SEQRES 18 A 457 GLY GLN GLU ILE LYS PRO THR LEU LEU GLU LEU GLY GLY SEQRES 19 A 457 SER ASP PRO PHE VAL VAL PHE PRO SER ALA ASP LEU ASP SEQRES 20 A 457 GLU ALA VAL GLU VAL GLY THR VAL ALA ARG THR MET ASN SEQRES 21 A 457 ASN GLY GLN SER CYS ILE ALA ALA LYS ARG PHE ILE LEU SEQRES 22 A 457 HIS GLU ALA ILE ALA ALA GLU PHE LEU GLU LYS LEU HIS SEQRES 23 A 457 LEU LYS PHE ALA SER LEU LYS ILE GLY ASP PRO MET ALA SEQRES 24 A 457 PRO GLU THR ASP ILE GLY PRO LEU ALA THR GLU GLY ILE SEQRES 25 A 457 LEU GLN ASP ILE SER ARG GLN VAL ASP GLN ALA VAL ALA SEQRES 26 A 457 ALA GLY ALA LYS ILE LEU LEU GLY GLY ARG PRO LEU ASP SEQRES 27 A 457 ARG ALA GLY TYR PHE TYR PRO PRO THR ILE LEU THR GLU SEQRES 28 A 457 ILE PRO PRO GLY ALA LYS ILE LEU GLN GLU GLU LEU PHE SEQRES 29 A 457 ALA PRO VAL ALA MET VAL PHE THR VAL LYS ASP LEU ASP SEQRES 30 A 457 GLN ALA ILE ALA LEU ALA ASN ASP ILE PRO PHE GLY LEU SEQRES 31 A 457 GLY ALA SER ALA TRP THR ASN ASP PRO ALA GLU GLN GLN SEQRES 32 A 457 ARG PHE ILE GLN GLU LEU ASP ALA GLY ALA VAL PHE ILE SEQRES 33 A 457 ASN GLY MET VAL LYS SER ASP PRO ARG LEU PRO PHE GLY SEQRES 34 A 457 GLY THR LYS ARG SER GLY TYR GLY ARG GLU LEU GLY LEU SEQRES 35 A 457 ALA GLY ILE ARG THR PHE VAL ASN ALA LYS THR VAL TRP SEQRES 36 A 457 LEU LYS SEQRES 1 B 457 GLY SER HIS MET ALA ILE ALA THR ILE ASN PRO THR THR SEQRES 2 B 457 GLY GLU ILE CYS GLN ARG PHE LYS ALA LEU THR PRO ALA SEQRES 3 B 457 GLU ILE ASP ALA LYS LEU ALA LYS ALA GLN GLU ALA PHE SEQRES 4 B 457 GLN ALA TYR ARG ARG THR SER PHE SER GLN ARG ARG GLN SEQRES 5 B 457 TRP LEU GLU ASN ALA ALA ALA ILE LEU GLU ARG ASP THR SEQRES 6 B 457 SER LYS PHE ALA GLU ILE MET THR THR GLU MET GLY LYS SEQRES 7 B 457 THR HIS GLN SER ALA ILE ALA GLU ALA GLU LYS SER ALA SEQRES 8 B 457 LEU VAL CYS ARG TYR TYR ALA GLU HIS GLY GLU GLN PHE SEQRES 9 B 457 LEU ALA ASN GLU TYR THR GLU THR GLN ALA THR GLU SER SEQRES 10 B 457 TYR VAL CYS TYR GLN PRO LEU GLY ILE LEU LEU ALA VAL SEQRES 11 B 457 MET PRO TRP ASN PHE PRO PHE TRP GLN VAL PHE ARG PHE SEQRES 12 B 457 ALA ALA PRO ALA LEU MET ALA GLY ASN VAL ALA VAL LEU SEQRES 13 B 457 LYS HIS ALA SER ASN VAL PRO GLN CYS ALA LEU ALA VAL SEQRES 14 B 457 GLU ALA ILE LEU GLU ALA ALA GLY PHE PRO GLU GLY VAL SEQRES 15 B 457 PHE GLN THR LEU LEU ILE GLY ALA SER GLN VAL GLU GLN SEQRES 16 B 457 VAL ILE LYS ASP PRO ARG VAL LYS ALA ALA THR LEU THR SEQRES 17 B 457 GLY SER GLU PRO ALA GLY ALA SER LEU ALA SER LEU ALA SEQRES 18 B 457 GLY GLN GLU ILE LYS PRO THR LEU LEU GLU LEU GLY GLY SEQRES 19 B 457 SER ASP PRO PHE VAL VAL PHE PRO SER ALA ASP LEU ASP SEQRES 20 B 457 GLU ALA VAL GLU VAL GLY THR VAL ALA ARG THR MET ASN SEQRES 21 B 457 ASN GLY GLN SER CYS ILE ALA ALA LYS ARG PHE ILE LEU SEQRES 22 B 457 HIS GLU ALA ILE ALA ALA GLU PHE LEU GLU LYS LEU HIS SEQRES 23 B 457 LEU LYS PHE ALA SER LEU LYS ILE GLY ASP PRO MET ALA SEQRES 24 B 457 PRO GLU THR ASP ILE GLY PRO LEU ALA THR GLU GLY ILE SEQRES 25 B 457 LEU GLN ASP ILE SER ARG GLN VAL ASP GLN ALA VAL ALA SEQRES 26 B 457 ALA GLY ALA LYS ILE LEU LEU GLY GLY ARG PRO LEU ASP SEQRES 27 B 457 ARG ALA GLY TYR PHE TYR PRO PRO THR ILE LEU THR GLU SEQRES 28 B 457 ILE PRO PRO GLY ALA LYS ILE LEU GLN GLU GLU LEU PHE SEQRES 29 B 457 ALA PRO VAL ALA MET VAL PHE THR VAL LYS ASP LEU ASP SEQRES 30 B 457 GLN ALA ILE ALA LEU ALA ASN ASP ILE PRO PHE GLY LEU SEQRES 31 B 457 GLY ALA SER ALA TRP THR ASN ASP PRO ALA GLU GLN GLN SEQRES 32 B 457 ARG PHE ILE GLN GLU LEU ASP ALA GLY ALA VAL PHE ILE SEQRES 33 B 457 ASN GLY MET VAL LYS SER ASP PRO ARG LEU PRO PHE GLY SEQRES 34 B 457 GLY THR LYS ARG SER GLY TYR GLY ARG GLU LEU GLY LEU SEQRES 35 B 457 ALA GLY ILE ARG THR PHE VAL ASN ALA LYS THR VAL TRP SEQRES 36 B 457 LEU LYS FORMUL 3 HOH *710(H2 O) HELIX 1 1 THR A 21 ARG A 40 1 20 HELIX 2 2 SER A 43 ASP A 61 1 19 HELIX 3 3 ASP A 61 GLY A 74 1 14 HELIX 4 4 THR A 76 LEU A 102 1 27 HELIX 5 5 PHE A 134 ALA A 147 1 14 HELIX 6 6 VAL A 159 GLY A 174 1 16 HELIX 7 7 GLY A 186 SER A 188 5 3 HELIX 8 8 GLN A 189 ASP A 196 1 8 HELIX 9 9 SER A 207 GLU A 221 1 15 HELIX 10 10 ASP A 242 MET A 256 1 15 HELIX 11 11 ASN A 257 GLN A 260 5 4 HELIX 12 12 GLU A 272 SER A 288 1 17 HELIX 13 13 THR A 306 GLY A 324 1 19 HELIX 14 14 ALA A 353 GLU A 358 5 6 HELIX 15 15 ASP A 372 ASN A 381 1 10 HELIX 16 16 ASP A 395 LEU A 406 1 12 HELIX 17 17 THR A 428 ARG A 430 5 3 HELIX 18 18 LEU A 437 THR A 444 1 8 HELIX 19 19 THR B 21 ARG B 40 1 20 HELIX 20 20 SER B 43 ASP B 61 1 19 HELIX 21 21 ASP B 61 GLY B 74 1 14 HELIX 22 22 THR B 76 LEU B 102 1 27 HELIX 23 23 PHE B 134 GLY B 148 1 15 HELIX 24 24 VAL B 159 GLY B 174 1 16 HELIX 25 25 GLY B 186 SER B 188 5 3 HELIX 26 26 GLN B 189 ASP B 196 1 8 HELIX 27 27 SER B 207 GLU B 221 1 15 HELIX 28 28 ASP B 242 MET B 256 1 15 HELIX 29 29 ASN B 257 GLN B 260 5 4 HELIX 30 30 ILE B 274 SER B 288 1 15 HELIX 31 31 THR B 306 ALA B 323 1 18 HELIX 32 32 ALA B 353 GLU B 358 5 6 HELIX 33 33 ASP B 372 ASN B 381 1 10 HELIX 34 34 ASP B 395 LEU B 406 1 12 HELIX 35 35 LEU B 437 THR B 444 1 8 SHEET 1 A 2 ALA A 4 ILE A 6 0 SHEET 2 A 2 ILE A 13 ARG A 16 -1 O GLN A 15 N THR A 5 SHEET 1 B10 GLU A 105 TYR A 106 0 SHEET 2 B10 GLU A 113 PRO A 120 -1 O VAL A 116 N GLU A 105 SHEET 3 B10 VAL A 446 LEU A 453 -1 O LEU A 453 N GLU A 113 SHEET 4 B10 ALA B 410 ILE B 413 1 O VAL B 411 N THR A 450 SHEET 5 B10 GLY B 388 TRP B 392 1 N ALA B 389 O PHE B 412 SHEET 6 B10 ASP B 233 VAL B 237 1 N VAL B 236 O SER B 390 SHEET 7 B10 ALA B 265 HIS B 271 1 O ILE B 269 N VAL B 237 SHEET 8 B10 VAL B 364 VAL B 370 1 O PHE B 368 N LEU B 270 SHEET 9 B10 THR B 344 THR B 347 1 N THR B 344 O ALA B 365 SHEET 10 B10 LYS B 326 LEU B 329 -1 N LYS B 326 O THR B 347 SHEET 1 C 6 PHE A 180 THR A 182 0 SHEET 2 C 6 VAL A 150 LYS A 154 1 N LEU A 153 O GLN A 181 SHEET 3 C 6 ILE A 123 VAL A 127 1 N ALA A 126 O LYS A 154 SHEET 4 C 6 VAL A 199 THR A 205 1 O LYS A 200 N ILE A 123 SHEET 5 C 6 THR A 225 GLU A 228 1 O GLU A 228 N LEU A 204 SHEET 6 C 6 GLY A 432 TYR A 433 -1 O TYR A 433 N LEU A 227 SHEET 1 D10 LYS A 326 LEU A 329 0 SHEET 2 D10 THR A 344 THR A 347 -1 O THR A 347 N LYS A 326 SHEET 3 D10 VAL A 364 VAL A 370 1 O ALA A 365 N LEU A 346 SHEET 4 D10 ARG A 267 HIS A 271 1 N LEU A 270 O PHE A 368 SHEET 5 D10 PRO A 234 VAL A 237 1 N VAL A 237 O ILE A 269 SHEET 6 D10 GLY A 388 TRP A 392 1 O SER A 390 N VAL A 236 SHEET 7 D10 ALA A 410 ILE A 413 1 O PHE A 412 N ALA A 389 SHEET 8 D10 VAL B 446 LEU B 453 1 O TRP B 452 N ILE A 413 SHEET 9 D10 GLU B 113 PRO B 120 -1 N GLN B 119 O ASN B 447 SHEET 10 D10 GLU B 105 TYR B 106 -1 N GLU B 105 O VAL B 116 SHEET 1 E 2 ALA B 4 ILE B 6 0 SHEET 2 E 2 ILE B 13 ARG B 16 -1 O CYS B 14 N THR B 5 SHEET 1 F 6 PHE B 180 LEU B 183 0 SHEET 2 F 6 VAL B 150 LYS B 154 1 N LEU B 153 O LEU B 183 SHEET 3 F 6 ILE B 123 VAL B 127 1 N ALA B 126 O LYS B 154 SHEET 4 F 6 VAL B 199 THR B 205 1 O THR B 203 N VAL B 127 SHEET 5 F 6 THR B 225 GLU B 228 1 O LEU B 226 N LEU B 204 SHEET 6 F 6 GLY B 432 TYR B 433 -1 O TYR B 433 N LEU B 227 SHEET 1 G 2 PHE B 385 GLY B 386 0 SHEET 2 G 2 THR B 428 LYS B 429 -1 N THR B 428 O GLY B 386 CRYST1 42.986 115.626 180.533 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005539 0.00000