HEADER DNA BINDING PROTEIN 12-OCT-12 3VZI TITLE CRYSTAL STRUCTURE OF CRISPR-ASSOCIATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED PROTEIN CAS5, DVULG SUBTYPE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS ORYZAE PV. ORYZAE; SOURCE 3 ORGANISM_TAXID: 360094; SOURCE 4 STRAIN: PXO99A; SOURCE 5 GENE: CAS5D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RRM, RIBONUCLEASE, NUCLEIC ACID, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.BAE,Y.KOO REVDAT 3 08-NOV-23 3VZI 1 SEQADV REVDAT 2 23-OCT-13 3VZI 1 JRNL REVDAT 1 27-MAR-13 3VZI 0 JRNL AUTH Y.KOO,D.KA,E.J.KIM,N.SUH,E.BAE JRNL TITL CONSERVATION AND VARIABILITY IN THE STRUCTURE AND FUNCTION JRNL TITL 2 OF THE CAS5D ENDORIBONUCLEASE IN THE CRISPR-MEDIATED JRNL TITL 3 MICROBIAL IMMUNE SYSTEM JRNL REF J.MOL.BIOL. V. 425 3799 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23500492 JRNL DOI 10.1016/J.JMB.2013.02.032 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.401 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3436 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4648 ; 1.488 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;34.308 ;22.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;21.156 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2652 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 69 REMARK 3 RESIDUE RANGE : A 105 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3706 -9.9328 -13.0462 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.2216 REMARK 3 T33: 0.0660 T12: -0.0757 REMARK 3 T13: 0.0103 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 3.0509 L22: 1.6965 REMARK 3 L33: 3.4593 L12: 0.6499 REMARK 3 L13: -1.2070 L23: -1.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: -0.2998 S13: 0.0814 REMARK 3 S21: 0.1664 S22: -0.0449 S23: -0.0194 REMARK 3 S31: -0.1675 S32: 0.3149 S33: -0.1168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5859 20.7758 -7.2314 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.3566 REMARK 3 T33: 0.5198 T12: -0.1448 REMARK 3 T13: -0.0057 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 12.7449 L22: 7.0282 REMARK 3 L33: 12.6987 L12: 8.8316 REMARK 3 L13: 1.0487 L23: -2.6450 REMARK 3 S TENSOR REMARK 3 S11: 0.3429 S12: -0.4910 S13: 0.5473 REMARK 3 S21: 0.0290 S22: -0.0433 S23: 0.4297 REMARK 3 S31: 0.6966 S32: -0.9754 S33: -0.2996 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 67 REMARK 3 RESIDUE RANGE : B 105 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0095 0.9247 -37.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.2776 REMARK 3 T33: 0.1270 T12: -0.0086 REMARK 3 T13: 0.0842 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 4.7453 L22: 1.9021 REMARK 3 L33: 2.9908 L12: 0.9371 REMARK 3 L13: -0.6238 L23: -1.2030 REMARK 3 S TENSOR REMARK 3 S11: 0.3487 S12: -0.1310 S13: 0.1454 REMARK 3 S21: -0.0131 S22: -0.1971 S23: 0.0145 REMARK 3 S31: -0.2996 S32: -0.1515 S33: -0.1516 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3061 -32.2874 -17.2939 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.5720 REMARK 3 T33: 0.6333 T12: -0.0373 REMARK 3 T13: 0.2011 T23: -0.1721 REMARK 3 L TENSOR REMARK 3 L11: 4.8278 L22: 6.7863 REMARK 3 L33: 18.0848 L12: 4.8564 REMARK 3 L13: -7.2847 L23: -5.3711 REMARK 3 S TENSOR REMARK 3 S11: -1.1102 S12: 0.5554 S13: -1.2377 REMARK 3 S21: -1.4858 S22: -0.0407 S23: -1.0642 REMARK 3 S31: 1.5453 S32: -0.6755 S33: 1.1509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KG4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M DL-MALIC ACID, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.98650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.67800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.42100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.67800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.98650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.42100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -45.97300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASN A 70 REMARK 465 GLU A 71 REMARK 465 VAL A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 LYS A 75 REMARK 465 THR A 171 REMARK 465 PRO A 172 REMARK 465 PRO A 173 REMARK 465 ARG A 223 REMARK 465 ALA A 224 REMARK 465 GLY B -1 REMARK 465 ARG B 68 REMARK 465 ARG B 69 REMARK 465 ASN B 70 REMARK 465 GLU B 71 REMARK 465 VAL B 72 REMARK 465 GLY B 73 REMARK 465 SER B 74 REMARK 465 LYS B 75 REMARK 465 LEU B 76 REMARK 465 SER B 77 REMARK 465 ARG B 223 REMARK 465 ALA B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 -78.10 -99.84 REMARK 500 GLU A 111 63.72 34.89 REMARK 500 HIS A 190 -65.18 -91.31 REMARK 500 ASP A 193 103.18 -55.08 REMARK 500 PHE A 194 -52.44 -28.45 REMARK 500 ALA A 195 -82.24 -49.88 REMARK 500 MET A 198 -50.45 -146.26 REMARK 500 ASP A 219 -177.05 -170.73 REMARK 500 HIS B 44 134.00 -170.65 REMARK 500 ALA B 87 37.65 -96.08 REMARK 500 ARG B 89 49.61 -106.40 REMARK 500 GLN B 103 65.51 -150.71 REMARK 500 GLU B 111 79.05 46.07 REMARK 500 ASP B 169 71.76 -105.93 REMARK 500 ASP B 176 135.35 -39.44 REMARK 500 HIS B 190 -68.13 -91.02 REMARK 500 MET B 198 -60.12 -132.92 REMARK 500 ASP B 209 18.90 52.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 3VZI A 21 224 UNP B2SNP4 B2SNP4_XANOP 1 204 DBREF 3VZI B 21 224 UNP B2SNP4 B2SNP4_XANOP 1 204 SEQADV 3VZI GLY A -1 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI HIS A 0 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI MET A 1 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI SER A 2 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI TYR A 3 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLY A 4 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI VAL A 5 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG A 6 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI LEU A 7 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI HIS A 8 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI VAL A 9 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI TRP A 10 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLY A 11 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLU A 12 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG A 13 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ALA A 14 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI LEU A 15 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI PHE A 16 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI THR A 17 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG A 18 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI PRO A 19 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLU A 20 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLY B -1 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI HIS B 0 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI MET B 1 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI SER B 2 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI TYR B 3 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLY B 4 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI VAL B 5 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG B 6 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI LEU B 7 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI HIS B 8 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI VAL B 9 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI TRP B 10 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLY B 11 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLU B 12 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG B 13 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ALA B 14 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI LEU B 15 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI PHE B 16 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI THR B 17 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI ARG B 18 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI PRO B 19 UNP B2SNP4 EXPRESSION TAG SEQADV 3VZI GLU B 20 UNP B2SNP4 EXPRESSION TAG SEQRES 1 A 226 GLY HIS MET SER TYR GLY VAL ARG LEU HIS VAL TRP GLY SEQRES 2 A 226 GLU ARG ALA LEU PHE THR ARG PRO GLU MET LYS VAL GLU SEQRES 3 A 226 ARG VAL SER TYR ASP ILE ILE THR PRO SER ALA ALA ARG SEQRES 4 A 226 GLY ILE LEU GLU ALA ILE HIS TRP LYS PRO ALA ILE ARG SEQRES 5 A 226 TRP VAL VAL ASP SER ILE GLN VAL LEU LYS PRO ILE CYS SEQRES 6 A 226 PHE GLU SER ILE ARG ARG ASN GLU VAL GLY SER LYS LEU SEQRES 7 A 226 SER ALA ALA SER ILE SER LYS ALA ILE LYS ALA GLY ARG SEQRES 8 A 226 THR ASP GLU LEU VAL LYS TYR VAL GLU GLU ASP ARG GLN SEQRES 9 A 226 GLN ARG ALA ALA THR VAL LEU ARG GLU VAL GLY TYR ILE SEQRES 10 A 226 ILE ALA ALA HIS PHE GLU MET THR ASP LYS ALA GLY PRO SEQRES 11 A 226 ASP ASP ASN VAL GLY LYS HIS LEU ASP ILE PHE ASN ARG SEQRES 12 A 226 ARG ALA ARG ARG GLY GLN CYS PHE GLN ALA PRO CYS LEU SEQRES 13 A 226 GLY THR ARG GLU PHE PRO ALA SER PHE ALA LEU LEU GLY SEQRES 14 A 226 ASP ASP ASP THR PRO PRO ALA SER ASP PRO ALA LEU SER SEQRES 15 A 226 GLY GLU ARG ASP LEU GLY TRP MET LEU HIS ASP ILE ASP SEQRES 16 A 226 PHE ALA ASP GLY MET THR PRO ARG PHE PHE ARG ALA ARG SEQRES 17 A 226 MET VAL ASP GLY LEU VAL ALA VAL PRO PRO PRO GLN ASP SEQRES 18 A 226 GLY GLY VAL ARG ALA SEQRES 1 B 226 GLY HIS MET SER TYR GLY VAL ARG LEU HIS VAL TRP GLY SEQRES 2 B 226 GLU ARG ALA LEU PHE THR ARG PRO GLU MET LYS VAL GLU SEQRES 3 B 226 ARG VAL SER TYR ASP ILE ILE THR PRO SER ALA ALA ARG SEQRES 4 B 226 GLY ILE LEU GLU ALA ILE HIS TRP LYS PRO ALA ILE ARG SEQRES 5 B 226 TRP VAL VAL ASP SER ILE GLN VAL LEU LYS PRO ILE CYS SEQRES 6 B 226 PHE GLU SER ILE ARG ARG ASN GLU VAL GLY SER LYS LEU SEQRES 7 B 226 SER ALA ALA SER ILE SER LYS ALA ILE LYS ALA GLY ARG SEQRES 8 B 226 THR ASP GLU LEU VAL LYS TYR VAL GLU GLU ASP ARG GLN SEQRES 9 B 226 GLN ARG ALA ALA THR VAL LEU ARG GLU VAL GLY TYR ILE SEQRES 10 B 226 ILE ALA ALA HIS PHE GLU MET THR ASP LYS ALA GLY PRO SEQRES 11 B 226 ASP ASP ASN VAL GLY LYS HIS LEU ASP ILE PHE ASN ARG SEQRES 12 B 226 ARG ALA ARG ARG GLY GLN CYS PHE GLN ALA PRO CYS LEU SEQRES 13 B 226 GLY THR ARG GLU PHE PRO ALA SER PHE ALA LEU LEU GLY SEQRES 14 B 226 ASP ASP ASP THR PRO PRO ALA SER ASP PRO ALA LEU SER SEQRES 15 B 226 GLY GLU ARG ASP LEU GLY TRP MET LEU HIS ASP ILE ASP SEQRES 16 B 226 PHE ALA ASP GLY MET THR PRO ARG PHE PHE ARG ALA ARG SEQRES 17 B 226 MET VAL ASP GLY LEU VAL ALA VAL PRO PRO PRO GLN ASP SEQRES 18 B 226 GLY GLY VAL ARG ALA FORMUL 3 HOH *52(H2 O) HELIX 1 1 THR A 32 HIS A 44 1 13 HELIX 2 2 SER A 77 ALA A 87 1 11 HELIX 3 3 ARG A 89 GLN A 102 1 14 HELIX 4 4 ASN A 131 ARG A 145 1 15 HELIX 5 5 THR B 32 HIS B 44 1 13 HELIX 6 6 ALA B 79 ALA B 87 1 9 HELIX 7 7 THR B 90 ARG B 101 1 12 HELIX 8 8 ASN B 131 ARG B 145 1 15 HELIX 9 9 ASP B 176 SER B 180 5 5 SHEET 1 A 4 ARG A 25 VAL A 26 0 SHEET 2 A 4 ALA A 106 MET A 122 1 O THR A 107 N ARG A 25 SHEET 3 A 4 VAL A 5 ALA A 14 -1 N LEU A 7 O ILE A 116 SHEET 4 A 4 SER A 162 LEU A 165 -1 O ALA A 164 N HIS A 8 SHEET 1 B 4 PHE A 64 ILE A 67 0 SHEET 2 B 4 ALA A 106 MET A 122 -1 O ALA A 106 N ILE A 67 SHEET 3 B 4 ILE A 49 VAL A 58 -1 N VAL A 52 O HIS A 119 SHEET 4 B 4 LEU A 211 ALA A 213 -1 O VAL A 212 N ILE A 56 SHEET 1 C 2 GLU A 182 ILE A 192 0 SHEET 2 C 2 PRO A 200 VAL A 208 -1 O ARG A 201 N HIS A 190 SHEET 1 D 4 ARG B 25 VAL B 26 0 SHEET 2 D 4 ALA B 106 MET B 122 1 O THR B 107 N ARG B 25 SHEET 3 D 4 VAL B 5 ALA B 14 -1 N VAL B 5 O ALA B 118 SHEET 4 D 4 SER B 162 LEU B 165 -1 O ALA B 164 N HIS B 8 SHEET 1 E 6 PHE B 64 SER B 66 0 SHEET 2 E 6 ALA B 106 MET B 122 -1 O VAL B 108 N GLU B 65 SHEET 3 E 6 ILE B 49 VAL B 58 -1 N ASP B 54 O ALA B 117 SHEET 4 E 6 LEU B 211 ALA B 213 -1 O VAL B 212 N ILE B 56 SHEET 5 E 6 PRO B 200 VAL B 208 -1 N VAL B 208 O LEU B 211 SHEET 6 E 6 GLU B 182 ILE B 192 -1 N HIS B 190 O ARG B 201 CRYST1 45.973 54.842 179.356 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005576 0.00000