HEADER TRANSFERASE 17-OCT-12 3VZY TITLE CRYSTAL STRUCTURE OF PCRB COMPLEXED WITH G1P FROM BACILLUS SUBTILIS TITLE 2 SUBAP. SUBTILIS STR. 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPTAPRENYLGLYCERYL PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCRB, HEPGP SYNTHASE, GLYCEROL-1-PHOSPHATE COMPND 5 HEPTAPRENYLTRANSFERASE; COMPND 6 EC: 2.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: PCRB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS BIOSYNTHESIS, PRENYLTRANSFERASES, ENZYME CATALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.REN,X.FENG,T.P.KO,C.H.HUANG,Y.HU,H.C.CHAN,Y.L.LIU,K.WANG,C.C.CHEN, AUTHOR 2 X.PANG,M.HE,Y.LI,E.OLDFIELD,R.T.GUO REVDAT 3 08-NOV-23 3VZY 1 REMARK LINK REVDAT 2 31-JUL-13 3VZY 1 JRNL REVDAT 1 26-DEC-12 3VZY 0 JRNL AUTH F.REN,X.FENG,T.P.KO,C.H.HUANG,Y.HU,H.C.CHAN,Y.L.LIU,K.WANG, JRNL AUTH 2 C.C.CHEN,X.PANG,M.HE,Y.LI,E.OLDFIELD,R.T.GUO JRNL TITL INSIGHTS INTO TIM-BARREL PRENYL TRANSFERASE MECHANISMS: JRNL TITL 2 CRYSTAL STRUCTURES OF PCRB FROM BACILLUS SUBTILIS AND JRNL TITL 3 STAPHYLOCOCCUS AUREUS JRNL REF CHEMBIOCHEM V. 14 195 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23322418 JRNL DOI 10.1002/CBIC.201200748 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 51321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4368 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M NACL, 14% PEG6000, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.92300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 227 REMARK 465 GLU A 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 460 O HOH B 581 2.09 REMARK 500 O HOH B 424 O HOH B 589 2.10 REMARK 500 O HOH A 963 O HOH A 1088 2.12 REMARK 500 OE1 GLU A 103 O HOH A 1084 2.16 REMARK 500 OD2 ASP B 216 O HOH B 484 2.16 REMARK 500 OD2 ASP A 140 O HOH A 1001 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 213 O HOH A 1033 2645 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 112 CG GLU A 112 CD -0.090 REMARK 500 GLU B 70 CD GLU B 70 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 42 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -32.85 -136.43 REMARK 500 ASP A 21 -126.37 41.80 REMARK 500 ASP A 124 67.32 -107.12 REMARK 500 SER A 162 -112.73 54.60 REMARK 500 THR A 180 15.44 -140.19 REMARK 500 ASP A 214 89.90 -154.04 REMARK 500 SER B 162 -119.31 40.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 185 0.07 SIDE CHAIN REMARK 500 TYR B 185 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 705 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 5 O REMARK 620 2 HOH A 816 O 84.7 REMARK 620 3 HOH A 818 O 92.1 87.1 REMARK 620 4 HOH A 819 O 91.9 176.6 92.9 REMARK 620 5 HOH A 966 O 173.3 90.3 83.2 93.1 REMARK 620 6 HOH A1030 O 93.9 89.0 172.5 91.3 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 39 O REMARK 620 2 HOH A 870 O 163.8 REMARK 620 3 HOH A 972 O 82.9 97.5 REMARK 620 4 HOH A 978 O 103.6 91.8 107.6 REMARK 620 5 HOH A1043 O 76.4 100.0 157.4 86.2 REMARK 620 6 HOH A1078 O 71.6 92.2 87.1 164.1 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 56 O REMARK 620 2 PHE A 58 O 103.0 REMARK 620 3 HOH A 830 O 92.2 162.4 REMARK 620 4 HOH A 831 O 97.5 80.8 106.4 REMARK 620 5 HOH A 832 O 168.3 88.6 76.1 85.6 REMARK 620 6 HOH A 973 O 90.9 88.7 82.0 167.8 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 203 OD1 REMARK 620 2 HOH A 816 O 96.1 REMARK 620 3 HOH A 817 O 104.6 85.4 REMARK 620 4 HOH A 966 O 170.4 90.1 83.1 REMARK 620 5 HOH A1012 O 83.7 85.1 168.0 89.7 REMARK 620 6 HOH A1089 O 82.8 178.7 94.1 91.0 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 704 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 941 O REMARK 620 2 HOH A 974 O 87.9 REMARK 620 3 HOH A 975 O 87.7 89.6 REMARK 620 4 HOH A1018 O 91.6 171.3 81.7 REMARK 620 5 HOH A1042 O 101.3 91.3 171.0 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 829 O REMARK 620 2 HOH A 830 O 153.2 REMARK 620 3 HOH A 832 O 91.8 72.2 REMARK 620 4 HOH A 833 O 102.0 99.1 88.9 REMARK 620 5 HOH A 973 O 77.7 80.4 88.2 177.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 5 O REMARK 620 2 HOH B 434 O 84.4 REMARK 620 3 HOH B 436 O 87.3 170.0 REMARK 620 4 HOH B 438 O 94.4 90.9 95.4 REMARK 620 5 HOH B 505 O 175.2 91.1 97.0 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 45 OE1 REMARK 620 2 ASP B 46 OD1 77.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 56 O REMARK 620 2 PHE B 58 O 95.1 REMARK 620 3 HOH B 466 O 95.9 79.9 REMARK 620 4 HOH B 467 O 177.5 87.3 83.5 REMARK 620 5 HOH B 501 O 89.8 174.8 98.0 87.8 REMARK 620 6 HOH B 502 O 93.0 87.8 165.4 88.0 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 203 OD1 REMARK 620 2 HOH B 434 O 92.5 REMARK 620 3 HOH B 504 O 85.0 74.5 REMARK 620 4 HOH B 505 O 165.0 91.9 82.3 REMARK 620 5 HOH B 506 O 108.9 87.1 157.6 85.7 REMARK 620 6 HOH B 565 O 79.4 169.7 98.3 94.4 101.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1GP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VZX RELATED DB: PDB REMARK 900 RELATED ID: 3VZZ RELATED DB: PDB REMARK 900 RELATED ID: 3W00 RELATED DB: PDB REMARK 900 RELATED ID: 3W01 RELATED DB: PDB REMARK 900 RELATED ID: 3W02 RELATED DB: PDB DBREF 3VZY A 1 228 UNP O34790 PCRB_BACSU 1 228 DBREF 3VZY B 1 228 UNP O34790 PCRB_BACSU 1 228 SEQRES 1 A 228 MET TYR ASP VAL THR GLU TRP LYS HIS VAL PHE LYS LEU SEQRES 2 A 228 ASP PRO ASN LYS ASP LEU PRO ASP GLU GLN LEU GLU ILE SEQRES 3 A 228 LEU CYS GLU SER GLY THR ASP ALA VAL ILE ILE GLY GLY SEQRES 4 A 228 SER ASP GLY VAL THR GLU ASP ASN VAL LEU ARG MET MET SEQRES 5 A 228 SER LYS VAL ARG ARG PHE LEU VAL PRO CYS VAL LEU GLU SEQRES 6 A 228 VAL SER ALA ILE GLU ALA ILE VAL PRO GLY PHE ASP LEU SEQRES 7 A 228 TYR PHE ILE PRO SER VAL LEU ASN SER LYS ASN ALA ASP SEQRES 8 A 228 TRP ILE VAL GLY MET HIS GLN LYS ALA MET LYS GLU TYR SEQRES 9 A 228 GLY GLU LEU MET SER MET GLU GLU ILE VAL ALA GLU GLY SEQRES 10 A 228 TYR CYS ILE ALA ASN PRO ASP CYS LYS ALA ALA ALA LEU SEQRES 11 A 228 THR GLU ALA ASP ALA ASP LEU ASN MET ASP ASP ILE VAL SEQRES 12 A 228 ALA TYR ALA ARG VAL SER GLU LEU LEU GLN LEU PRO ILE SEQRES 13 A 228 PHE TYR LEU GLU TYR SER GLY VAL LEU GLY ASP ILE GLU SEQRES 14 A 228 ALA VAL LYS LYS THR LYS ALA VAL LEU GLU THR SER THR SEQRES 15 A 228 LEU PHE TYR GLY GLY GLY ILE LYS ASP ALA GLU THR ALA SEQRES 16 A 228 LYS GLN TYR ALA GLU HIS ALA ASP VAL ILE VAL VAL GLY SEQRES 17 A 228 ASN ALA VAL TYR GLU ASP PHE ASP ARG ALA LEU LYS THR SEQRES 18 A 228 VAL ALA ALA VAL LYS GLY GLU SEQRES 1 B 228 MET TYR ASP VAL THR GLU TRP LYS HIS VAL PHE LYS LEU SEQRES 2 B 228 ASP PRO ASN LYS ASP LEU PRO ASP GLU GLN LEU GLU ILE SEQRES 3 B 228 LEU CYS GLU SER GLY THR ASP ALA VAL ILE ILE GLY GLY SEQRES 4 B 228 SER ASP GLY VAL THR GLU ASP ASN VAL LEU ARG MET MET SEQRES 5 B 228 SER LYS VAL ARG ARG PHE LEU VAL PRO CYS VAL LEU GLU SEQRES 6 B 228 VAL SER ALA ILE GLU ALA ILE VAL PRO GLY PHE ASP LEU SEQRES 7 B 228 TYR PHE ILE PRO SER VAL LEU ASN SER LYS ASN ALA ASP SEQRES 8 B 228 TRP ILE VAL GLY MET HIS GLN LYS ALA MET LYS GLU TYR SEQRES 9 B 228 GLY GLU LEU MET SER MET GLU GLU ILE VAL ALA GLU GLY SEQRES 10 B 228 TYR CYS ILE ALA ASN PRO ASP CYS LYS ALA ALA ALA LEU SEQRES 11 B 228 THR GLU ALA ASP ALA ASP LEU ASN MET ASP ASP ILE VAL SEQRES 12 B 228 ALA TYR ALA ARG VAL SER GLU LEU LEU GLN LEU PRO ILE SEQRES 13 B 228 PHE TYR LEU GLU TYR SER GLY VAL LEU GLY ASP ILE GLU SEQRES 14 B 228 ALA VAL LYS LYS THR LYS ALA VAL LEU GLU THR SER THR SEQRES 15 B 228 LEU PHE TYR GLY GLY GLY ILE LYS ASP ALA GLU THR ALA SEQRES 16 B 228 LYS GLN TYR ALA GLU HIS ALA ASP VAL ILE VAL VAL GLY SEQRES 17 B 228 ASN ALA VAL TYR GLU ASP PHE ASP ARG ALA LEU LYS THR SEQRES 18 B 228 VAL ALA ALA VAL LYS GLY GLU HET MG A 701 1 HET MG A 702 1 HET MG A 703 1 HET MG A 704 1 HET MG A 705 1 HET MG A 706 1 HET CL A 707 1 HET CL A 708 1 HET CL A 709 1 HET CL A 710 1 HET 1GP B 301 10 HET MG B 302 1 HET MG B 303 1 HET MG B 304 1 HET MG B 305 1 HET CL B 306 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM 1GP SN-GLYCEROL-1-PHOSPHATE FORMUL 3 MG 10(MG 2+) FORMUL 9 CL 5(CL 1-) FORMUL 13 1GP C3 H9 O6 P FORMUL 19 HOH *503(H2 O) HELIX 1 1 ASP A 3 TRP A 7 5 5 HELIX 2 2 GLU A 22 GLU A 29 1 8 HELIX 3 3 THR A 44 ARG A 56 1 13 HELIX 4 4 ALA A 68 ILE A 72 5 5 HELIX 5 5 VAL A 94 GLU A 111 1 18 HELIX 6 6 CYS A 125 THR A 131 1 7 HELIX 7 7 ASN A 138 LEU A 152 1 15 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 191 GLU A 200 1 10 HELIX 10 10 ASN A 209 ASP A 214 1 6 HELIX 11 11 ASP A 214 LYS A 220 1 7 HELIX 12 12 LYS A 220 LYS A 226 1 7 HELIX 13 13 ASP B 3 TRP B 7 5 5 HELIX 14 14 PRO B 20 GLU B 29 1 10 HELIX 15 15 THR B 44 ARG B 56 1 13 HELIX 16 16 ALA B 68 ILE B 72 5 5 HELIX 17 17 ASN B 89 ILE B 93 5 5 HELIX 18 18 VAL B 94 TYR B 104 1 11 HELIX 19 19 TYR B 104 GLU B 111 1 8 HELIX 20 20 CYS B 125 GLU B 132 1 8 HELIX 21 21 ASN B 138 GLN B 153 1 16 HELIX 22 22 ASP B 167 LEU B 178 1 12 HELIX 23 23 ASP B 191 GLU B 200 1 10 HELIX 24 24 GLY B 208 ASP B 214 1 7 HELIX 25 25 ASP B 214 LYS B 220 1 7 HELIX 26 26 LYS B 220 GLY B 227 1 8 SHEET 1 A 9 HIS A 9 LEU A 13 0 SHEET 2 A 9 VAL A 35 ILE A 37 1 O ILE A 36 N LEU A 13 SHEET 3 A 9 CYS A 62 GLU A 65 1 O VAL A 63 N ILE A 37 SHEET 4 A 9 LEU A 78 VAL A 84 1 O PHE A 80 N LEU A 64 SHEET 5 A 9 ILE A 113 ILE A 120 1 O TYR A 118 N SER A 83 SHEET 6 A 9 ILE A 156 GLU A 160 1 O ILE A 156 N GLY A 117 SHEET 7 A 9 THR A 182 GLY A 186 1 O PHE A 184 N PHE A 157 SHEET 8 A 9 VAL A 204 VAL A 207 1 O VAL A 204 N LEU A 183 SHEET 9 A 9 HIS A 9 LEU A 13 1 N VAL A 10 O VAL A 207 SHEET 1 B 9 HIS B 9 LEU B 13 0 SHEET 2 B 9 ALA B 34 GLY B 39 1 O GLY B 38 N LEU B 13 SHEET 3 B 9 CYS B 62 VAL B 66 1 O VAL B 63 N ILE B 37 SHEET 4 B 9 LEU B 78 VAL B 84 1 O PHE B 80 N VAL B 66 SHEET 5 B 9 ILE B 113 ILE B 120 1 O VAL B 114 N TYR B 79 SHEET 6 B 9 ILE B 156 GLU B 160 1 O ILE B 156 N GLY B 117 SHEET 7 B 9 THR B 182 GLY B 186 1 O PHE B 184 N LEU B 159 SHEET 8 B 9 VAL B 204 VAL B 207 1 O VAL B 204 N TYR B 185 SHEET 9 B 9 HIS B 9 LEU B 13 1 N LYS B 12 O VAL B 207 LINK O THR A 5 MG MG A 705 1555 1555 2.27 LINK O GLY A 39 MG MG A 703 1555 1555 2.73 LINK O ARG A 56 MG MG A 701 1555 1555 2.35 LINK O PHE A 58 MG MG A 701 1555 1555 2.25 LINK OD1 ASP A 203 MG MG A 702 1555 1555 2.38 LINK MG MG A 701 O HOH A 830 1555 1555 2.33 LINK MG MG A 701 O HOH A 831 1555 1555 2.43 LINK MG MG A 701 O HOH A 832 1555 1555 2.47 LINK MG MG A 701 O HOH A 973 1555 1555 2.36 LINK MG MG A 702 O HOH A 816 1555 1555 2.44 LINK MG MG A 702 O HOH A 817 1555 1555 2.57 LINK MG MG A 702 O HOH A 966 1555 1555 2.49 LINK MG MG A 702 O HOH A1012 1555 1555 2.47 LINK MG MG A 702 O HOH A1089 1555 1555 2.25 LINK MG MG A 703 O HOH A 870 1555 1555 2.77 LINK MG MG A 703 O HOH A 972 1555 1555 2.57 LINK MG MG A 703 O HOH A 978 1555 1555 2.70 LINK MG MG A 703 O HOH A1043 1555 1555 2.43 LINK MG MG A 703 O HOH A1078 1555 1555 2.58 LINK MG MG A 704 O HOH A 941 1555 1555 2.33 LINK MG MG A 704 O HOH A 974 1555 1555 2.38 LINK MG MG A 704 O HOH A 975 1555 1555 2.59 LINK MG MG A 704 O HOH A1018 1555 1555 2.43 LINK MG MG A 704 O HOH A1042 1555 1555 2.35 LINK MG MG A 705 O HOH A 816 1555 1555 2.37 LINK MG MG A 705 O HOH A 818 1555 1555 2.46 LINK MG MG A 705 O HOH A 819 1555 1555 2.28 LINK MG MG A 705 O HOH A 966 1555 1555 2.55 LINK MG MG A 705 O HOH A1030 1555 1555 2.41 LINK MG MG A 706 O HOH A 829 1555 1555 2.41 LINK MG MG A 706 O HOH A 830 1555 1555 2.49 LINK MG MG A 706 O HOH A 832 1555 1555 2.54 LINK MG MG A 706 O HOH A 833 1555 1555 2.28 LINK MG MG A 706 O HOH A 973 1555 1555 2.27 LINK O THR B 5 MG MG B 303 1555 1555 2.20 LINK OE1 GLU B 45 MG MG B 305 1555 1555 2.41 LINK OD1 ASP B 46 MG MG B 305 1555 1555 2.13 LINK O ARG B 56 MG MG B 302 1555 1555 2.49 LINK O PHE B 58 MG MG B 302 1555 1555 2.36 LINK OD1 ASP B 203 MG MG B 304 1555 1555 2.40 LINK MG MG B 302 O HOH B 466 1555 1555 2.43 LINK MG MG B 302 O HOH B 467 1555 1555 2.39 LINK MG MG B 302 O HOH B 501 1555 1555 2.22 LINK MG MG B 302 O HOH B 502 1555 1555 2.55 LINK MG MG B 303 O HOH B 434 1555 1555 2.54 LINK MG MG B 303 O HOH B 436 1555 1555 2.61 LINK MG MG B 303 O HOH B 438 1555 1555 2.44 LINK MG MG B 303 O HOH B 505 1555 1555 2.41 LINK MG MG B 304 O HOH B 434 1555 1555 2.39 LINK MG MG B 304 O HOH B 504 1555 1555 2.57 LINK MG MG B 304 O HOH B 505 1555 1555 2.52 LINK MG MG B 304 O HOH B 506 1555 1555 2.39 LINK MG MG B 304 O HOH B 565 1555 1555 2.43 SITE 1 AC1 7 ARG A 56 PHE A 58 MG A 706 HOH A 830 SITE 2 AC1 7 HOH A 831 HOH A 832 HOH A 973 SITE 1 AC2 7 ASP A 203 MG A 705 HOH A 816 HOH A 817 SITE 2 AC2 7 HOH A 966 HOH A1012 HOH A1089 SITE 1 AC3 6 GLY A 39 HOH A 870 HOH A 972 HOH A 978 SITE 2 AC3 6 HOH A1043 HOH A1078 SITE 1 AC4 5 HOH A 941 HOH A 974 HOH A 975 HOH A1018 SITE 2 AC4 5 HOH A1042 SITE 1 AC5 7 THR A 5 MG A 702 HOH A 816 HOH A 818 SITE 2 AC5 7 HOH A 819 HOH A 966 HOH A1030 SITE 1 AC6 6 MG A 701 HOH A 829 HOH A 830 HOH A 832 SITE 2 AC6 6 HOH A 833 HOH A 973 SITE 1 AC7 1 LEU A 59 SITE 1 AC8 4 TYR A 2 TRP A 7 HOH A 823 HOH A1076 SITE 1 AC9 2 GLY A 188 HOH A 855 SITE 1 BC1 3 LEU A 19 LYS A 54 HOH A 882 SITE 1 BC2 12 LYS B 12 TYR B 158 GLU B 160 SER B 162 SITE 2 BC2 12 GLY B 163 GLY B 186 GLY B 188 GLY B 208 SITE 3 BC2 12 ASN B 209 HOH B 422 HOH B 423 HOH B 589 SITE 1 BC3 6 ARG B 56 PHE B 58 HOH B 466 HOH B 467 SITE 2 BC3 6 HOH B 501 HOH B 502 SITE 1 BC4 6 THR B 5 MG B 304 HOH B 434 HOH B 436 SITE 2 BC4 6 HOH B 438 HOH B 505 SITE 1 BC5 7 ASP B 203 MG B 303 HOH B 434 HOH B 504 SITE 2 BC5 7 HOH B 505 HOH B 506 HOH B 565 SITE 1 BC6 6 GLU A 70 HOH A 951 HOH A 952 GLU B 45 SITE 2 BC6 6 ASP B 46 HOH B 486 SITE 1 BC7 1 GLU B 45 CRYST1 53.919 55.846 76.686 90.00 108.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018546 0.000000 0.006321 0.00000 SCALE2 0.000000 0.017906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013777 0.00000