data_3W07 # _entry.id 3W07 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3W07 pdb_00003w07 10.2210/pdb3w07/pdb RCSB RCSB095720 ? ? WWPDB D_1000095720 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-20 2 'Structure model' 1 1 2013-05-29 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_special_symmetry 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3W07 _pdbx_database_status.recvd_initial_deposition_date 2012-10-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LOQ 'the same molecule in complex with the same ligand at 1.5 A resolution' unspecified PDB 3G1D 'the same molecule in complex with the same ligand at 1.5 A resolution' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujihashi, M.' 1 'Pai, E.F.' 2 'Miki, K.' 3 # _citation.id primary _citation.title ;Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 9011 _citation.page_last 9016 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23395822 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.427252 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujihashi, M.' 1 ? primary 'Mito, K.' 2 ? primary 'Pai, E.F.' 3 ? primary 'Miki, K.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Orotidine 5'-phosphate decarboxylase ; 27379.402 1 4.1.1.23 R101P ? ? 2 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 168 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'OMP decarboxylase, OMPDCase, OMPdecase, ODCASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIP ETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGP STRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLRIPEDPAANKAR KEAELAAATAEQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIP ETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGP STRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLRIPEDPAANKAR KEAELAAATAEQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "URIDINE-5'-MONOPHOSPHATE" U5P 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ARG n 1 6 SER n 1 7 ARG n 1 8 ARG n 1 9 VAL n 1 10 ASP n 1 11 VAL n 1 12 MET n 1 13 ASP n 1 14 VAL n 1 15 MET n 1 16 ASN n 1 17 ARG n 1 18 LEU n 1 19 ILE n 1 20 LEU n 1 21 ALA n 1 22 MET n 1 23 ASP n 1 24 LEU n 1 25 MET n 1 26 ASN n 1 27 ARG n 1 28 ASP n 1 29 ASP n 1 30 ALA n 1 31 LEU n 1 32 ARG n 1 33 VAL n 1 34 THR n 1 35 GLY n 1 36 GLU n 1 37 VAL n 1 38 ARG n 1 39 GLU n 1 40 TYR n 1 41 ILE n 1 42 ASP n 1 43 THR n 1 44 VAL n 1 45 LYS n 1 46 ILE n 1 47 GLY n 1 48 TYR n 1 49 PRO n 1 50 LEU n 1 51 VAL n 1 52 LEU n 1 53 SER n 1 54 GLU n 1 55 GLY n 1 56 MET n 1 57 ASP n 1 58 ILE n 1 59 ILE n 1 60 ALA n 1 61 GLU n 1 62 PHE n 1 63 ARG n 1 64 LYS n 1 65 ARG n 1 66 PHE n 1 67 GLY n 1 68 CYS n 1 69 ARG n 1 70 ILE n 1 71 ILE n 1 72 ALA n 1 73 ASP n 1 74 PHE n 1 75 LYS n 1 76 VAL n 1 77 ALA n 1 78 ASP n 1 79 ILE n 1 80 PRO n 1 81 GLU n 1 82 THR n 1 83 ASN n 1 84 GLU n 1 85 LYS n 1 86 ILE n 1 87 CYS n 1 88 ARG n 1 89 ALA n 1 90 THR n 1 91 PHE n 1 92 LYS n 1 93 ALA n 1 94 GLY n 1 95 ALA n 1 96 ASP n 1 97 ALA n 1 98 ILE n 1 99 ILE n 1 100 VAL n 1 101 HIS n 1 102 GLY n 1 103 PHE n 1 104 PRO n 1 105 GLY n 1 106 ALA n 1 107 ASP n 1 108 SER n 1 109 VAL n 1 110 ARG n 1 111 ALA n 1 112 CYS n 1 113 LEU n 1 114 ASN n 1 115 VAL n 1 116 ALA n 1 117 GLU n 1 118 GLU n 1 119 MET n 1 120 GLY n 1 121 ARG n 1 122 GLU n 1 123 VAL n 1 124 PHE n 1 125 LEU n 1 126 LEU n 1 127 THR n 1 128 GLU n 1 129 MET n 1 130 SER n 1 131 HIS n 1 132 PRO n 1 133 GLY n 1 134 ALA n 1 135 GLU n 1 136 MET n 1 137 PHE n 1 138 ILE n 1 139 GLN n 1 140 GLY n 1 141 ALA n 1 142 ALA n 1 143 ASP n 1 144 GLU n 1 145 ILE n 1 146 ALA n 1 147 ARG n 1 148 MET n 1 149 GLY n 1 150 VAL n 1 151 ASP n 1 152 LEU n 1 153 GLY n 1 154 VAL n 1 155 LYS n 1 156 ASN n 1 157 TYR n 1 158 VAL n 1 159 GLY n 1 160 PRO n 1 161 SER n 1 162 THR n 1 163 ARG n 1 164 PRO n 1 165 GLU n 1 166 ARG n 1 167 LEU n 1 168 SER n 1 169 ARG n 1 170 LEU n 1 171 ARG n 1 172 GLU n 1 173 ILE n 1 174 ILE n 1 175 GLY n 1 176 GLN n 1 177 ASP n 1 178 SER n 1 179 PHE n 1 180 LEU n 1 181 ILE n 1 182 SER n 1 183 PRO n 1 184 GLY n 1 185 VAL n 1 186 GLY n 1 187 ALA n 1 188 GLN n 1 189 GLY n 1 190 GLY n 1 191 ASP n 1 192 PRO n 1 193 GLY n 1 194 GLU n 1 195 THR n 1 196 LEU n 1 197 ARG n 1 198 PHE n 1 199 ALA n 1 200 ASP n 1 201 ALA n 1 202 ILE n 1 203 ILE n 1 204 VAL n 1 205 GLY n 1 206 ARG n 1 207 SER n 1 208 ILE n 1 209 TYR n 1 210 LEU n 1 211 ALA n 1 212 ASP n 1 213 ASN n 1 214 PRO n 1 215 ALA n 1 216 ALA n 1 217 ALA n 1 218 ALA n 1 219 ALA n 1 220 GLY n 1 221 ILE n 1 222 ILE n 1 223 GLU n 1 224 SER n 1 225 ILE n 1 226 LYS n 1 227 ASP n 1 228 LEU n 1 229 ARG n 1 230 ILE n 1 231 PRO n 1 232 GLU n 1 233 ASP n 1 234 PRO n 1 235 ALA n 1 236 ALA n 1 237 ASN n 1 238 LYS n 1 239 ALA n 1 240 ARG n 1 241 LYS n 1 242 GLU n 1 243 ALA n 1 244 GLU n 1 245 LEU n 1 246 ALA n 1 247 ALA n 1 248 ALA n 1 249 THR n 1 250 ALA n 1 251 GLU n 1 252 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pyrF, MTH_129' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanothermobacter thermautotrophicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 187420 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U5P non-polymer . "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ARG 5 2 ? ? ? A . n A 1 6 SER 6 3 ? ? ? A . n A 1 7 ARG 7 4 ? ? ? A . n A 1 8 ARG 8 5 ? ? ? A . n A 1 9 VAL 9 6 ? ? ? A . n A 1 10 ASP 10 7 ? ? ? A . n A 1 11 VAL 11 8 ? ? ? A . n A 1 12 MET 12 9 ? ? ? A . n A 1 13 ASP 13 10 ? ? ? A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 MET 15 12 12 MET MET A . n A 1 16 ASN 16 13 13 ASN ASN A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 ILE 19 16 16 ILE ILE A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 MET 22 19 19 MET MET A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 MET 25 22 22 MET MET A . n A 1 26 ASN 26 23 23 ASN ASN A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 ASP 28 25 25 ASP ASP A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 ARG 32 29 29 ARG ARG A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 GLY 35 32 32 GLY GLY A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 ARG 38 35 35 ARG ARG A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 TYR 40 37 37 TYR TYR A . n A 1 41 ILE 41 38 38 ILE ILE A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 VAL 44 41 41 VAL VAL A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 ILE 46 43 43 ILE ILE A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 PRO 49 46 46 PRO PRO A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 VAL 51 48 48 VAL VAL A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 SER 53 50 50 SER SER A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 GLY 55 52 52 GLY GLY A . n A 1 56 MET 56 53 53 MET MET A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 ALA 60 57 57 ALA ALA A . n A 1 61 GLU 61 58 58 GLU GLU A . n A 1 62 PHE 62 59 59 PHE PHE A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 PHE 66 63 63 PHE PHE A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 CYS 68 65 65 CYS CYS A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 ILE 70 67 67 ILE ILE A . n A 1 71 ILE 71 68 68 ILE ILE A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 LYS 75 72 72 LYS LYS A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 ILE 79 76 76 ILE ILE A . n A 1 80 PRO 80 77 77 PRO PRO A . n A 1 81 GLU 81 78 78 GLU GLU A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 ASN 83 80 80 ASN ASN A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 LYS 85 82 82 LYS LYS A . n A 1 86 ILE 86 83 83 ILE ILE A . n A 1 87 CYS 87 84 84 CYS CYS A . n A 1 88 ARG 88 85 85 ARG ARG A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 THR 90 87 87 THR THR A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 ASP 96 93 93 ASP ASP A . n A 1 97 ALA 97 94 94 ALA ALA A . n A 1 98 ILE 98 95 95 ILE ILE A . n A 1 99 ILE 99 96 96 ILE ILE A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 GLY 102 99 99 GLY GLY A . n A 1 103 PHE 103 100 100 PHE PHE A . n A 1 104 PRO 104 101 101 PRO PRO A . n A 1 105 GLY 105 102 102 GLY GLY A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 ARG 110 107 107 ARG ARG A . n A 1 111 ALA 111 108 108 ALA ALA A . n A 1 112 CYS 112 109 109 CYS CYS A . n A 1 113 LEU 113 110 110 LEU LEU A . n A 1 114 ASN 114 111 111 ASN ASN A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 GLU 118 115 115 GLU GLU A . n A 1 119 MET 119 116 116 MET MET A . n A 1 120 GLY 120 117 117 GLY GLY A . n A 1 121 ARG 121 118 118 ARG ARG A . n A 1 122 GLU 122 119 119 GLU GLU A . n A 1 123 VAL 123 120 120 VAL VAL A . n A 1 124 PHE 124 121 121 PHE PHE A . n A 1 125 LEU 125 122 122 LEU LEU A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 THR 127 124 124 THR THR A . n A 1 128 GLU 128 125 125 GLU GLU A . n A 1 129 MET 129 126 126 MET MET A . n A 1 130 SER 130 127 127 SER SER A . n A 1 131 HIS 131 128 128 HIS HIS A . n A 1 132 PRO 132 129 129 PRO PRO A . n A 1 133 GLY 133 130 130 GLY GLY A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 MET 136 133 133 MET MET A . n A 1 137 PHE 137 134 134 PHE PHE A . n A 1 138 ILE 138 135 135 ILE ILE A . n A 1 139 GLN 139 136 136 GLN GLN A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 ALA 142 139 139 ALA ALA A . n A 1 143 ASP 143 140 140 ASP ASP A . n A 1 144 GLU 144 141 141 GLU GLU A . n A 1 145 ILE 145 142 142 ILE ILE A . n A 1 146 ALA 146 143 143 ALA ALA A . n A 1 147 ARG 147 144 144 ARG ARG A . n A 1 148 MET 148 145 145 MET MET A . n A 1 149 GLY 149 146 146 GLY GLY A . n A 1 150 VAL 150 147 147 VAL VAL A . n A 1 151 ASP 151 148 148 ASP ASP A . n A 1 152 LEU 152 149 149 LEU LEU A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 VAL 154 151 151 VAL VAL A . n A 1 155 LYS 155 152 152 LYS LYS A . n A 1 156 ASN 156 153 153 ASN ASN A . n A 1 157 TYR 157 154 154 TYR TYR A . n A 1 158 VAL 158 155 155 VAL VAL A . n A 1 159 GLY 159 156 156 GLY GLY A . n A 1 160 PRO 160 157 157 PRO PRO A . n A 1 161 SER 161 158 158 SER SER A . n A 1 162 THR 162 159 159 THR THR A . n A 1 163 ARG 163 160 160 ARG ARG A . n A 1 164 PRO 164 161 161 PRO PRO A . n A 1 165 GLU 165 162 162 GLU GLU A . n A 1 166 ARG 166 163 163 ARG ARG A . n A 1 167 LEU 167 164 164 LEU LEU A . n A 1 168 SER 168 165 165 SER SER A . n A 1 169 ARG 169 166 166 ARG ARG A . n A 1 170 LEU 170 167 167 LEU LEU A . n A 1 171 ARG 171 168 168 ARG ARG A . n A 1 172 GLU 172 169 169 GLU GLU A . n A 1 173 ILE 173 170 170 ILE ILE A . n A 1 174 ILE 174 171 171 ILE ILE A . n A 1 175 GLY 175 172 172 GLY GLY A . n A 1 176 GLN 176 173 173 GLN GLN A . n A 1 177 ASP 177 174 174 ASP ASP A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 PHE 179 176 176 PHE PHE A . n A 1 180 LEU 180 177 177 LEU LEU A . n A 1 181 ILE 181 178 178 ILE ILE A . n A 1 182 SER 182 179 179 SER SER A . n A 1 183 PRO 183 180 180 PRO PRO A . n A 1 184 GLY 184 181 181 GLY GLY A . n A 1 185 VAL 185 182 182 VAL VAL A . n A 1 186 GLY 186 183 183 GLY GLY A . n A 1 187 ALA 187 184 184 ALA ALA A . n A 1 188 GLN 188 185 185 GLN GLN A . n A 1 189 GLY 189 186 186 GLY GLY A . n A 1 190 GLY 190 187 187 GLY GLY A . n A 1 191 ASP 191 188 188 ASP ASP A . n A 1 192 PRO 192 189 189 PRO PRO A . n A 1 193 GLY 193 190 190 GLY GLY A . n A 1 194 GLU 194 191 191 GLU GLU A . n A 1 195 THR 195 192 192 THR THR A . n A 1 196 LEU 196 193 193 LEU LEU A . n A 1 197 ARG 197 194 194 ARG ARG A . n A 1 198 PHE 198 195 195 PHE PHE A . n A 1 199 ALA 199 196 196 ALA ALA A . n A 1 200 ASP 200 197 197 ASP ASP A . n A 1 201 ALA 201 198 198 ALA ALA A . n A 1 202 ILE 202 199 199 ILE ILE A . n A 1 203 ILE 203 200 200 ILE ILE A . n A 1 204 VAL 204 201 201 VAL VAL A . n A 1 205 GLY 205 202 202 GLY GLY A . n A 1 206 ARG 206 203 203 ARG ARG A . n A 1 207 SER 207 204 204 SER SER A . n A 1 208 ILE 208 205 205 ILE ILE A . n A 1 209 TYR 209 206 206 TYR TYR A . n A 1 210 LEU 210 207 207 LEU LEU A . n A 1 211 ALA 211 208 208 ALA ALA A . n A 1 212 ASP 212 209 209 ASP ASP A . n A 1 213 ASN 213 210 210 ASN ASN A . n A 1 214 PRO 214 211 211 PRO PRO A . n A 1 215 ALA 215 212 212 ALA ALA A . n A 1 216 ALA 216 213 213 ALA ALA A . n A 1 217 ALA 217 214 214 ALA ALA A . n A 1 218 ALA 218 215 215 ALA ALA A . n A 1 219 ALA 219 216 216 ALA ALA A . n A 1 220 GLY 220 217 217 GLY GLY A . n A 1 221 ILE 221 218 218 ILE ILE A . n A 1 222 ILE 222 219 219 ILE ILE A . n A 1 223 GLU 223 220 220 GLU GLU A . n A 1 224 SER 224 221 221 SER SER A . n A 1 225 ILE 225 222 222 ILE ILE A . n A 1 226 LYS 226 223 223 LYS LYS A . n A 1 227 ASP 227 224 224 ASP ASP A . n A 1 228 LEU 228 225 225 LEU LEU A . n A 1 229 ARG 229 226 ? ? ? A . n A 1 230 ILE 230 227 ? ? ? A . n A 1 231 PRO 231 228 ? ? ? A . n A 1 232 GLU 232 229 ? ? ? A . n A 1 233 ASP 233 230 ? ? ? A . n A 1 234 PRO 234 231 ? ? ? A . n A 1 235 ALA 235 232 ? ? ? A . n A 1 236 ALA 236 233 ? ? ? A . n A 1 237 ASN 237 234 ? ? ? A . n A 1 238 LYS 238 235 ? ? ? A . n A 1 239 ALA 239 236 ? ? ? A . n A 1 240 ARG 240 237 ? ? ? A . n A 1 241 LYS 241 238 ? ? ? A . n A 1 242 GLU 242 239 ? ? ? A . n A 1 243 ALA 243 240 ? ? ? A . n A 1 244 GLU 244 241 ? ? ? A . n A 1 245 LEU 245 242 ? ? ? A . n A 1 246 ALA 246 243 ? ? ? A . n A 1 247 ALA 247 244 ? ? ? A . n A 1 248 ALA 248 245 ? ? ? A . n A 1 249 THR 249 246 ? ? ? A . n A 1 250 ALA 250 247 ? ? ? A . n A 1 251 GLU 251 248 ? ? ? A . n A 1 252 GLN 252 249 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U5P 1 301 301 U5P U5P A . C 3 GOL 1 302 311 GOL GOL A . D 4 HOH 1 401 401 HOH HOH A . D 4 HOH 2 402 402 HOH HOH A . D 4 HOH 3 403 403 HOH HOH A . D 4 HOH 4 404 404 HOH HOH A . D 4 HOH 5 405 405 HOH HOH A . D 4 HOH 6 406 406 HOH HOH A . D 4 HOH 7 407 407 HOH HOH A . D 4 HOH 8 408 408 HOH HOH A . D 4 HOH 9 409 409 HOH HOH A . D 4 HOH 10 410 410 HOH HOH A . D 4 HOH 11 411 411 HOH HOH A . D 4 HOH 12 412 412 HOH HOH A . D 4 HOH 13 413 413 HOH HOH A . D 4 HOH 14 414 414 HOH HOH A . D 4 HOH 15 415 415 HOH HOH A . D 4 HOH 16 416 416 HOH HOH A . D 4 HOH 17 417 501 HOH HOH A . D 4 HOH 18 418 502 HOH HOH A . D 4 HOH 19 419 503 HOH HOH A . D 4 HOH 20 420 504 HOH HOH A . D 4 HOH 21 421 505 HOH HOH A . D 4 HOH 22 422 506 HOH HOH A . D 4 HOH 23 423 507 HOH HOH A . D 4 HOH 24 424 508 HOH HOH A . D 4 HOH 25 425 509 HOH HOH A . D 4 HOH 26 426 510 HOH HOH A . D 4 HOH 27 427 511 HOH HOH A . D 4 HOH 28 428 512 HOH HOH A . D 4 HOH 29 429 513 HOH HOH A . D 4 HOH 30 430 514 HOH HOH A . D 4 HOH 31 431 515 HOH HOH A . D 4 HOH 32 432 516 HOH HOH A . D 4 HOH 33 433 517 HOH HOH A . D 4 HOH 34 434 518 HOH HOH A . D 4 HOH 35 435 519 HOH HOH A . D 4 HOH 36 436 520 HOH HOH A . D 4 HOH 37 437 521 HOH HOH A . D 4 HOH 38 438 522 HOH HOH A . D 4 HOH 39 439 523 HOH HOH A . D 4 HOH 40 440 524 HOH HOH A . D 4 HOH 41 441 525 HOH HOH A . D 4 HOH 42 442 526 HOH HOH A . D 4 HOH 43 443 527 HOH HOH A . D 4 HOH 44 444 528 HOH HOH A . D 4 HOH 45 445 529 HOH HOH A . D 4 HOH 46 446 530 HOH HOH A . D 4 HOH 47 447 531 HOH HOH A . D 4 HOH 48 448 532 HOH HOH A . D 4 HOH 49 449 533 HOH HOH A . D 4 HOH 50 450 534 HOH HOH A . D 4 HOH 51 451 535 HOH HOH A . D 4 HOH 52 452 536 HOH HOH A . D 4 HOH 53 453 537 HOH HOH A . D 4 HOH 54 454 538 HOH HOH A . D 4 HOH 55 455 539 HOH HOH A . D 4 HOH 56 456 540 HOH HOH A . D 4 HOH 57 457 541 HOH HOH A . D 4 HOH 58 458 542 HOH HOH A . D 4 HOH 59 459 543 HOH HOH A . D 4 HOH 60 460 544 HOH HOH A . D 4 HOH 61 461 545 HOH HOH A . D 4 HOH 62 462 546 HOH HOH A . D 4 HOH 63 463 547 HOH HOH A . D 4 HOH 64 464 548 HOH HOH A . D 4 HOH 65 465 549 HOH HOH A . D 4 HOH 66 466 550 HOH HOH A . D 4 HOH 67 467 551 HOH HOH A . D 4 HOH 68 468 552 HOH HOH A . D 4 HOH 69 469 553 HOH HOH A . D 4 HOH 70 470 554 HOH HOH A . D 4 HOH 71 471 555 HOH HOH A . D 4 HOH 72 472 556 HOH HOH A . D 4 HOH 73 473 557 HOH HOH A . D 4 HOH 74 474 558 HOH HOH A . D 4 HOH 75 475 559 HOH HOH A . D 4 HOH 76 476 560 HOH HOH A . D 4 HOH 77 477 561 HOH HOH A . D 4 HOH 78 478 562 HOH HOH A . D 4 HOH 79 479 563 HOH HOH A . D 4 HOH 80 480 564 HOH HOH A . D 4 HOH 81 481 565 HOH HOH A . D 4 HOH 82 482 566 HOH HOH A . D 4 HOH 83 483 567 HOH HOH A . D 4 HOH 84 484 568 HOH HOH A . D 4 HOH 85 485 569 HOH HOH A . D 4 HOH 86 486 570 HOH HOH A . D 4 HOH 87 487 571 HOH HOH A . D 4 HOH 88 488 572 HOH HOH A . D 4 HOH 89 489 573 HOH HOH A . D 4 HOH 90 490 574 HOH HOH A . D 4 HOH 91 491 575 HOH HOH A . D 4 HOH 92 492 576 HOH HOH A . D 4 HOH 93 493 577 HOH HOH A . D 4 HOH 94 494 578 HOH HOH A . D 4 HOH 95 495 579 HOH HOH A . D 4 HOH 96 496 580 HOH HOH A . D 4 HOH 97 497 581 HOH HOH A . D 4 HOH 98 498 582 HOH HOH A . D 4 HOH 99 499 583 HOH HOH A . D 4 HOH 100 500 584 HOH HOH A . D 4 HOH 101 501 585 HOH HOH A . D 4 HOH 102 502 586 HOH HOH A . D 4 HOH 103 503 587 HOH HOH A . D 4 HOH 104 504 588 HOH HOH A . D 4 HOH 105 505 589 HOH HOH A . D 4 HOH 106 506 590 HOH HOH A . D 4 HOH 107 507 591 HOH HOH A . D 4 HOH 108 508 592 HOH HOH A . D 4 HOH 109 509 593 HOH HOH A . D 4 HOH 110 510 594 HOH HOH A . D 4 HOH 111 511 595 HOH HOH A . D 4 HOH 112 512 596 HOH HOH A . D 4 HOH 113 513 597 HOH HOH A . D 4 HOH 114 514 598 HOH HOH A . D 4 HOH 115 515 599 HOH HOH A . D 4 HOH 116 516 600 HOH HOH A . D 4 HOH 117 517 601 HOH HOH A . D 4 HOH 118 518 602 HOH HOH A . D 4 HOH 119 519 603 HOH HOH A . D 4 HOH 120 520 604 HOH HOH A . D 4 HOH 121 521 605 HOH HOH A . D 4 HOH 122 522 606 HOH HOH A . D 4 HOH 123 523 607 HOH HOH A . D 4 HOH 124 524 608 HOH HOH A . D 4 HOH 125 525 609 HOH HOH A . D 4 HOH 126 526 610 HOH HOH A . D 4 HOH 127 527 611 HOH HOH A . D 4 HOH 128 528 612 HOH HOH A . D 4 HOH 129 529 613 HOH HOH A . D 4 HOH 130 530 614 HOH HOH A . D 4 HOH 131 531 615 HOH HOH A . D 4 HOH 132 532 616 HOH HOH A . D 4 HOH 133 533 617 HOH HOH A . D 4 HOH 134 534 618 HOH HOH A . D 4 HOH 135 535 619 HOH HOH A . D 4 HOH 136 536 620 HOH HOH A . D 4 HOH 137 537 621 HOH HOH A . D 4 HOH 138 538 622 HOH HOH A . D 4 HOH 139 539 623 HOH HOH A . D 4 HOH 140 540 624 HOH HOH A . D 4 HOH 141 541 625 HOH HOH A . D 4 HOH 142 542 626 HOH HOH A . D 4 HOH 143 543 627 HOH HOH A . D 4 HOH 144 544 628 HOH HOH A . D 4 HOH 145 545 629 HOH HOH A . D 4 HOH 146 546 630 HOH HOH A . D 4 HOH 147 547 631 HOH HOH A . D 4 HOH 148 548 632 HOH HOH A . D 4 HOH 149 549 633 HOH HOH A . D 4 HOH 150 550 634 HOH HOH A . D 4 HOH 151 551 635 HOH HOH A . D 4 HOH 152 552 636 HOH HOH A . D 4 HOH 153 553 637 HOH HOH A . D 4 HOH 154 554 638 HOH HOH A . D 4 HOH 155 555 639 HOH HOH A . D 4 HOH 156 556 640 HOH HOH A . D 4 HOH 157 557 641 HOH HOH A . D 4 HOH 158 558 642 HOH HOH A . D 4 HOH 159 559 643 HOH HOH A . D 4 HOH 160 560 644 HOH HOH A . D 4 HOH 161 561 645 HOH HOH A . D 4 HOH 162 562 646 HOH HOH A . D 4 HOH 163 563 647 HOH HOH A . D 4 HOH 164 564 648 HOH HOH A . D 4 HOH 165 565 649 HOH HOH A . D 4 HOH 166 566 650 HOH HOH A . D 4 HOH 167 567 651 HOH HOH A . D 4 HOH 168 568 652 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 61 ? CD ? A LYS 64 CD 2 1 Y 1 A LYS 61 ? CE ? A LYS 64 CE 3 1 Y 1 A LYS 61 ? NZ ? A LYS 64 NZ 4 1 Y 1 A LYS 152 ? CE ? A LYS 155 CE 5 1 Y 1 A LYS 152 ? NZ ? A LYS 155 NZ 6 1 Y 1 A ASP 174 ? CG ? A ASP 177 CG 7 1 Y 1 A ASP 174 ? OD1 ? A ASP 177 OD1 8 1 Y 1 A ASP 174 ? OD2 ? A ASP 177 OD2 9 1 Y 1 A GLU 220 ? CD ? A GLU 223 CD 10 1 Y 1 A GLU 220 ? OE1 ? A GLU 223 OE1 11 1 Y 1 A GLU 220 ? OE2 ? A GLU 223 OE2 12 1 Y 1 A LYS 223 ? CG ? A LYS 226 CG 13 1 Y 1 A LYS 223 ? CD ? A LYS 226 CD 14 1 Y 1 A LYS 223 ? CE ? A LYS 226 CE 15 1 Y 1 A LYS 223 ? NZ ? A LYS 226 NZ 16 1 Y 1 A ASP 224 ? CG ? A ASP 227 CG 17 1 Y 1 A ASP 224 ? OD1 ? A ASP 227 OD1 18 1 Y 1 A ASP 224 ? OD2 ? A ASP 227 OD2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # _cell.entry_id 3W07 _cell.length_a 57.943 _cell.length_b 103.233 _cell.length_c 73.567 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3W07 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3W07 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 38.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '1.28M sodium citrate, 5%(v/v) dioxane, 0.1M HEPES-Na pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-10-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator default _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 3W07 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.03 _reflns.number_obs 108363 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 46.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.03 _reflns_shell.d_res_low 1.04 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.806 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3W07 _refine.ls_number_reflns_obs 102765 _refine.ls_number_reflns_all 108363 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.03 _refine.ls_percent_reflns_obs 93.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1177 _refine.ls_R_factor_R_free 0.1386 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 19192 _refine.ls_number_restraints 28126 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3W07 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 72 _refine_analyze.occupancy_sum_hydrogen 688.00 _refine_analyze.occupancy_sum_non_hydrogen 1777.15 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1612 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 1807 _refine_hist.d_res_high 1.03 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id s_bond_d 0.015 ? ? ? ? 'X-RAY DIFFRACTION' s_angle_d 0.030 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_dist 0.000 ? ? ? ? 'X-RAY DIFFRACTION' s_from_restr_planes 0.0300 ? ? ? ? 'X-RAY DIFFRACTION' s_zero_chiral_vol 0.098 ? ? ? ? 'X-RAY DIFFRACTION' s_non_zero_chiral_vol 0.089 ? ? ? ? 'X-RAY DIFFRACTION' s_anti_bump_dis_restr 0.038 ? ? ? ? 'X-RAY DIFFRACTION' s_rigid_bond_adp_cmpnt 0.005 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_adp_cmpnt 0.045 ? ? ? ? 'X-RAY DIFFRACTION' s_approx_iso_adps 0.109 ? ? ? ? 'X-RAY DIFFRACTION' # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3W07 _pdbx_refine.R_factor_all_no_cutoff 0.1177 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1035 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 86107 # _database_PDB_matrix.entry_id 3W07 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 3W07 _struct.title ;Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3W07 _struct_keywords.pdbx_keywords LYASE _struct_keywords.text ;Orotidine 5'-monophosphate decarboxylase, LYASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PYRF_METTH _struct_ref.pdbx_db_accession O26232 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETN EKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3W07 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 231 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O26232 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 228 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3W07 GLY A 1 ? UNP O26232 ? ? 'expression tag' -2 1 1 3W07 SER A 2 ? UNP O26232 ? ? 'expression tag' -1 2 1 3W07 HIS A 3 ? UNP O26232 ? ? 'expression tag' 0 3 1 3W07 PRO A 104 ? UNP O26232 ARG 101 'SEE REMARK 999' 101 4 1 3W07 ARG A 229 ? UNP O26232 LEU 226 'engineered mutation' 226 5 1 3W07 ILE A 230 ? UNP O26232 ASN 227 'engineered mutation' 227 6 1 3W07 GLU A 232 ? UNP O26232 ? ? 'expression tag' 229 7 1 3W07 ASP A 233 ? UNP O26232 ? ? 'expression tag' 230 8 1 3W07 PRO A 234 ? UNP O26232 ? ? 'expression tag' 231 9 1 3W07 ALA A 235 ? UNP O26232 ? ? 'expression tag' 232 10 1 3W07 ALA A 236 ? UNP O26232 ? ? 'expression tag' 233 11 1 3W07 ASN A 237 ? UNP O26232 ? ? 'expression tag' 234 12 1 3W07 LYS A 238 ? UNP O26232 ? ? 'expression tag' 235 13 1 3W07 ALA A 239 ? UNP O26232 ? ? 'expression tag' 236 14 1 3W07 ARG A 240 ? UNP O26232 ? ? 'expression tag' 237 15 1 3W07 LYS A 241 ? UNP O26232 ? ? 'expression tag' 238 16 1 3W07 GLU A 242 ? UNP O26232 ? ? 'expression tag' 239 17 1 3W07 ALA A 243 ? UNP O26232 ? ? 'expression tag' 240 18 1 3W07 GLU A 244 ? UNP O26232 ? ? 'expression tag' 241 19 1 3W07 LEU A 245 ? UNP O26232 ? ? 'expression tag' 242 20 1 3W07 ALA A 246 ? UNP O26232 ? ? 'expression tag' 243 21 1 3W07 ALA A 247 ? UNP O26232 ? ? 'expression tag' 244 22 1 3W07 ALA A 248 ? UNP O26232 ? ? 'expression tag' 245 23 1 3W07 THR A 249 ? UNP O26232 ? ? 'expression tag' 246 24 1 3W07 ALA A 250 ? UNP O26232 ? ? 'expression tag' 247 25 1 3W07 GLU A 251 ? UNP O26232 ? ? 'expression tag' 248 26 1 3W07 GLN A 252 ? UNP O26232 ? ? 'expression tag' 249 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5100 ? 1 MORE -41 ? 1 'SSA (A^2)' 14890 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 103.2330000000 0.0000000000 0.0000000000 -1.0000000000 73.5670000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 14 ? ASN A 16 ? VAL A 11 ASN A 13 5 ? 3 HELX_P HELX_P2 2 ASN A 26 ? ARG A 38 ? ASN A 23 ARG A 35 1 ? 13 HELX_P HELX_P3 3 GLU A 39 ? ILE A 41 ? GLU A 36 ILE A 38 5 ? 3 HELX_P HELX_P4 4 TYR A 48 ? GLY A 55 ? TYR A 45 GLY A 52 1 ? 8 HELX_P HELX_P5 5 MET A 56 ? GLY A 67 ? MET A 53 GLY A 64 1 ? 12 HELX_P HELX_P6 6 ILE A 79 ? ALA A 93 ? ILE A 76 ALA A 90 1 ? 15 HELX_P HELX_P7 7 GLY A 105 ? GLY A 120 ? GLY A 102 GLY A 117 1 ? 16 HELX_P HELX_P8 8 HIS A 131 ? MET A 136 ? HIS A 128 MET A 133 5 ? 6 HELX_P HELX_P9 9 PHE A 137 ? GLY A 153 ? PHE A 134 GLY A 150 1 ? 17 HELX_P HELX_P10 10 ARG A 163 ? GLY A 175 ? ARG A 160 GLY A 172 1 ? 13 HELX_P HELX_P11 11 ASP A 191 ? LEU A 196 ? ASP A 188 LEU A 193 1 ? 6 HELX_P HELX_P12 12 GLY A 205 ? LEU A 210 ? GLY A 202 LEU A 207 1 ? 6 HELX_P HELX_P13 13 ASN A 213 ? LEU A 228 ? ASN A 210 LEU A 225 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 18 ? MET A 22 ? LEU A 15 MET A 19 A 2 THR A 43 ? GLY A 47 ? THR A 40 GLY A 44 A 3 ARG A 69 ? VAL A 76 ? ARG A 66 VAL A 73 A 4 ALA A 97 ? HIS A 101 ? ALA A 94 HIS A 98 A 5 GLU A 122 ? LEU A 126 ? GLU A 119 LEU A 123 A 6 ASN A 156 ? VAL A 158 ? ASN A 153 VAL A 155 A 7 PHE A 179 ? SER A 182 ? PHE A 176 SER A 179 A 8 ALA A 201 ? VAL A 204 ? ALA A 198 VAL A 201 A 9 LEU A 18 ? MET A 22 ? LEU A 15 MET A 19 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 20 ? N LEU A 17 O LYS A 45 ? O LYS A 42 A 2 3 N VAL A 44 ? N VAL A 41 O ARG A 69 ? O ARG A 66 A 3 4 N ALA A 72 ? N ALA A 69 O ALA A 97 ? O ALA A 94 A 4 5 N VAL A 100 ? N VAL A 97 O LEU A 126 ? O LEU A 123 A 5 6 N LEU A 125 ? N LEU A 122 O ASN A 156 ? O ASN A 153 A 6 7 N TYR A 157 ? N TYR A 154 O PHE A 179 ? O PHE A 176 A 7 8 N SER A 182 ? N SER A 179 O ILE A 203 ? O ILE A 200 A 8 9 O ILE A 202 ? O ILE A 199 N ILE A 19 ? N ILE A 16 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A U5P 301 ? 20 'BINDING SITE FOR RESIDUE U5P A 301' AC2 Software A GOL 302 ? 7 'BINDING SITE FOR RESIDUE GOL A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ASP A 23 ? ASP A 20 . ? 1_555 ? 2 AC1 20 LYS A 45 ? LYS A 42 . ? 1_555 ? 3 AC1 20 ASP A 73 ? ASP A 70 . ? 1_555 ? 4 AC1 20 LYS A 75 ? LYS A 72 . ? 1_555 ? 5 AC1 20 ASP A 78 ? ASP A 75 . ? 4_566 ? 6 AC1 20 ILE A 79 ? ILE A 76 . ? 4_566 ? 7 AC1 20 THR A 82 ? THR A 79 . ? 4_566 ? 8 AC1 20 MET A 129 ? MET A 126 . ? 1_555 ? 9 AC1 20 SER A 130 ? SER A 127 . ? 1_555 ? 10 AC1 20 PRO A 183 ? PRO A 180 . ? 1_555 ? 11 AC1 20 GLN A 188 ? GLN A 185 . ? 1_555 ? 12 AC1 20 GLY A 205 ? GLY A 202 . ? 1_555 ? 13 AC1 20 ARG A 206 ? ARG A 203 . ? 1_555 ? 14 AC1 20 HOH D . ? HOH A 402 . ? 1_555 ? 15 AC1 20 HOH D . ? HOH A 403 . ? 1_555 ? 16 AC1 20 HOH D . ? HOH A 406 . ? 1_555 ? 17 AC1 20 HOH D . ? HOH A 407 . ? 1_555 ? 18 AC1 20 HOH D . ? HOH A 408 . ? 1_555 ? 19 AC1 20 HOH D . ? HOH A 411 . ? 1_555 ? 20 AC1 20 HOH D . ? HOH A 416 . ? 1_555 ? 21 AC2 7 THR A 162 ? THR A 159 . ? 8_556 ? 22 AC2 7 PRO A 164 ? PRO A 161 . ? 8_556 ? 23 AC2 7 GLY A 189 ? GLY A 186 . ? 8_556 ? 24 AC2 7 ASN A 213 ? ASN A 210 . ? 1_555 ? 25 AC2 7 HOH D . ? HOH A 429 . ? 1_555 ? 26 AC2 7 HOH D . ? HOH A 431 . ? 1_555 ? 27 AC2 7 HOH D . ? HOH A 529 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 81 ? B CD A GLU 81 ? B OE2 A GLU 81 ? B 131.14 123.30 7.84 1.20 N 2 1 NH1 A ARG 85 ? B CZ A ARG 85 ? B NH2 A ARG 85 ? B 128.00 119.40 8.60 1.10 N 3 1 NE A ARG 85 ? B CZ A ARG 85 ? B NH1 A ARG 85 ? B 114.32 120.30 -5.98 0.50 N 4 1 CD A ARG 118 ? A NE A ARG 118 ? A CZ A ARG 118 ? A 132.13 123.60 8.53 1.40 N 5 1 NE A ARG 144 ? A CZ A ARG 144 ? A NH2 A ARG 144 ? A 117.28 120.30 -3.02 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 74 ? ? -150.05 41.70 2 1 THR A 124 ? B -90.73 -92.16 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 60 ? A 0.269 'SIDE CHAIN' 2 1 ARG A 118 ? A 0.183 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 415 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 3W07 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;ACCORDING TO DEPOSITORS, PRO101 IS CORRECT AND UNIPORT IS PROBABLY INCORRECT AT THIS POSITION. DEPOSITORS SEQUENCED THE GENOME FROM M. THERMOAUTOTROPHICUM AND CONFIRMED IT IS PRO. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A ARG 2 ? A ARG 5 6 1 Y 1 A SER 3 ? A SER 6 7 1 Y 1 A ARG 4 ? A ARG 7 8 1 Y 1 A ARG 5 ? A ARG 8 9 1 Y 1 A VAL 6 ? A VAL 9 10 1 Y 1 A ASP 7 ? A ASP 10 11 1 Y 1 A VAL 8 ? A VAL 11 12 1 Y 1 A MET 9 ? A MET 12 13 1 Y 1 A ASP 10 ? A ASP 13 14 1 Y 1 A ARG 226 ? A ARG 229 15 1 Y 1 A ILE 227 ? A ILE 230 16 1 Y 1 A PRO 228 ? A PRO 231 17 1 Y 1 A GLU 229 ? A GLU 232 18 1 Y 1 A ASP 230 ? A ASP 233 19 1 Y 1 A PRO 231 ? A PRO 234 20 1 Y 1 A ALA 232 ? A ALA 235 21 1 Y 1 A ALA 233 ? A ALA 236 22 1 Y 1 A ASN 234 ? A ASN 237 23 1 Y 1 A LYS 235 ? A LYS 238 24 1 Y 1 A ALA 236 ? A ALA 239 25 1 Y 1 A ARG 237 ? A ARG 240 26 1 Y 1 A LYS 238 ? A LYS 241 27 1 Y 1 A GLU 239 ? A GLU 242 28 1 Y 1 A ALA 240 ? A ALA 243 29 1 Y 1 A GLU 241 ? A GLU 244 30 1 Y 1 A LEU 242 ? A LEU 245 31 1 Y 1 A ALA 243 ? A ALA 246 32 1 Y 1 A ALA 244 ? A ALA 247 33 1 Y 1 A ALA 245 ? A ALA 248 34 1 Y 1 A THR 246 ? A THR 249 35 1 Y 1 A ALA 247 ? A ALA 250 36 1 Y 1 A GLU 248 ? A GLU 251 37 1 Y 1 A GLN 249 ? A GLN 252 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 U5P N1 N N N 359 U5P C2 C N N 360 U5P N3 N N N 361 U5P C4 C N N 362 U5P C5 C N N 363 U5P C6 C N N 364 U5P O2 O N N 365 U5P O4 O N N 366 U5P "C1'" C N R 367 U5P "C2'" C N R 368 U5P "O2'" O N N 369 U5P "C3'" C N S 370 U5P "C4'" C N R 371 U5P "O3'" O N N 372 U5P "O4'" O N N 373 U5P "C5'" C N N 374 U5P "O5'" O N N 375 U5P P P N N 376 U5P O1P O N N 377 U5P O2P O N N 378 U5P O3P O N N 379 U5P HN3 H N N 380 U5P H5 H N N 381 U5P H6 H N N 382 U5P "H1'" H N N 383 U5P "H2'" H N N 384 U5P "HO2'" H N N 385 U5P "H3'" H N N 386 U5P "H4'" H N N 387 U5P "HO3'" H N N 388 U5P "H5'1" H N N 389 U5P "H5'2" H N N 390 U5P HOP2 H N N 391 U5P HOP3 H N N 392 VAL N N N N 393 VAL CA C N S 394 VAL C C N N 395 VAL O O N N 396 VAL CB C N N 397 VAL CG1 C N N 398 VAL CG2 C N N 399 VAL OXT O N N 400 VAL H H N N 401 VAL H2 H N N 402 VAL HA H N N 403 VAL HB H N N 404 VAL HG11 H N N 405 VAL HG12 H N N 406 VAL HG13 H N N 407 VAL HG21 H N N 408 VAL HG22 H N N 409 VAL HG23 H N N 410 VAL HXT H N N 411 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 U5P N1 C2 sing N N 343 U5P N1 C6 sing N N 344 U5P N1 "C1'" sing N N 345 U5P C2 N3 sing N N 346 U5P C2 O2 doub N N 347 U5P N3 C4 sing N N 348 U5P N3 HN3 sing N N 349 U5P C4 C5 sing N N 350 U5P C4 O4 doub N N 351 U5P C5 C6 doub N N 352 U5P C5 H5 sing N N 353 U5P C6 H6 sing N N 354 U5P "C1'" "C2'" sing N N 355 U5P "C1'" "O4'" sing N N 356 U5P "C1'" "H1'" sing N N 357 U5P "C2'" "O2'" sing N N 358 U5P "C2'" "C3'" sing N N 359 U5P "C2'" "H2'" sing N N 360 U5P "O2'" "HO2'" sing N N 361 U5P "C3'" "C4'" sing N N 362 U5P "C3'" "O3'" sing N N 363 U5P "C3'" "H3'" sing N N 364 U5P "C4'" "O4'" sing N N 365 U5P "C4'" "C5'" sing N N 366 U5P "C4'" "H4'" sing N N 367 U5P "O3'" "HO3'" sing N N 368 U5P "C5'" "O5'" sing N N 369 U5P "C5'" "H5'1" sing N N 370 U5P "C5'" "H5'2" sing N N 371 U5P "O5'" P sing N N 372 U5P P O1P doub N N 373 U5P P O2P sing N N 374 U5P P O3P sing N N 375 U5P O2P HOP2 sing N N 376 U5P O3P HOP3 sing N N 377 VAL N CA sing N N 378 VAL N H sing N N 379 VAL N H2 sing N N 380 VAL CA C sing N N 381 VAL CA CB sing N N 382 VAL CA HA sing N N 383 VAL C O doub N N 384 VAL C OXT sing N N 385 VAL CB CG1 sing N N 386 VAL CB CG2 sing N N 387 VAL CB HB sing N N 388 VAL CG1 HG11 sing N N 389 VAL CG1 HG12 sing N N 390 VAL CG1 HG13 sing N N 391 VAL CG2 HG21 sing N N 392 VAL CG2 HG22 sing N N 393 VAL CG2 HG23 sing N N 394 VAL OXT HXT sing N N 395 # _atom_sites.entry_id 3W07 _atom_sites.fract_transf_matrix[1][1] 0.017258 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009687 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013593 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P S # loop_