HEADER LYASE/LYASE INHIBITOR 02-NOV-12 3W0U TITLE HUMAN GLYOXALASE I WITH AN N-HYDROXYPYRIDONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDOKETOMUTASE, GLYOXALASE I, GLX I, KETONE-ALDEHYDE MUTASE, COMPND 5 METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE; COMPND 6 EC: 4.4.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS GLYOXALASE, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.A.FUKAMI,M.IRIE,T.MATSUURA REVDAT 2 08-NOV-23 3W0U 1 REMARK SEQADV LINK REVDAT 1 06-NOV-13 3W0U 0 JRNL AUTH H.KOYANO,T.AOKI,S.YAMAMOTO,T.KOBAYASHI,T.MIURA,K.OHARA, JRNL AUTH 2 T.A.FUKAMI,M.IRIE,H.SAKAMOTO JRNL TITL N-HYDROXYPYRIDONE-BASED GLYOXALASE I INHIBITORS MIMICKING JRNL TITL 2 BINDING INTERACTIONS OF THE SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -0.93000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3909 ; 1.234 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;38.638 ;25.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;13.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2188 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 0.985 ; 1.840 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1744 ; 1.654 ; 2.751 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.214 ; 1.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3W0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.695 REMARK 200 RESOLUTION RANGE LOW (A) : 31.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : 0.56000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3VW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 2000 MME, 10%(V/V) REMARK 280 GLYCEROL, 0.1M NA-HEPES (PH 7.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.08500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 MET A 183 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 SER B 7 REMARK 465 MET B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 66 NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 LYS A 156 CE NZ REMARK 470 LYS B 77 CE NZ REMARK 470 LYS B 82 CD CE NZ REMARK 470 LYS B 84 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 28 1.26 81.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 33 OE1 REMARK 620 2 GLU A 99 OE1 86.2 REMARK 620 3 HIS B 126 NE2 92.3 107.4 REMARK 620 4 GLU B 172 OE1 92.0 170.9 81.5 REMARK 620 5 HPW B 301 O22 152.2 115.7 96.6 63.6 REMARK 620 6 HPW B 301 O25 96.0 84.3 166.1 87.0 71.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 NE2 REMARK 620 2 GLU A 172 OE1 82.5 REMARK 620 3 HPW A 203 O22 97.5 63.7 REMARK 620 4 HPW A 203 O25 167.3 88.2 70.4 REMARK 620 5 GLN B 33 OE1 93.2 89.7 149.5 95.5 REMARK 620 6 GLU B 99 OE1 102.6 172.9 119.8 87.4 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPW A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HPW B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VW9 RELATED DB: PDB REMARK 900 RELATED ID: 3W0T RELATED DB: PDB DBREF 3W0U A 0 183 UNP Q04760 LGUL_HUMAN 1 184 DBREF 3W0U B 0 183 UNP Q04760 LGUL_HUMAN 1 184 SEQADV 3W0U GLY A -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0U SER A -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0U HIS A -1 UNP Q04760 EXPRESSION TAG SEQADV 3W0U GLY B -3 UNP Q04760 EXPRESSION TAG SEQADV 3W0U SER B -2 UNP Q04760 EXPRESSION TAG SEQADV 3W0U HIS B -1 UNP Q04760 EXPRESSION TAG SEQRES 1 A 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 A 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 A 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 A 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 A 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 A 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 A 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 A 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 A 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 A 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 A 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 A 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 A 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 A 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 A 187 MET ALA THR LEU MET SEQRES 1 B 187 GLY SER HIS MET ALA GLU PRO GLN PRO PRO SER GLY GLY SEQRES 2 B 187 LEU THR ASP GLU ALA ALA LEU SER CYS CYS SER ASP ALA SEQRES 3 B 187 ASP PRO SER THR LYS ASP PHE LEU LEU GLN GLN THR MET SEQRES 4 B 187 LEU ARG VAL LYS ASP PRO LYS LYS SER LEU ASP PHE TYR SEQRES 5 B 187 THR ARG VAL LEU GLY MET THR LEU ILE GLN LYS CYS ASP SEQRES 6 B 187 PHE PRO ILE MET LYS PHE SER LEU TYR PHE LEU ALA TYR SEQRES 7 B 187 GLU ASP LYS ASN ASP ILE PRO LYS GLU LYS ASP GLU LYS SEQRES 8 B 187 ILE ALA TRP ALA LEU SER ARG LYS ALA THR LEU GLU LEU SEQRES 9 B 187 THR HIS ASN TRP GLY THR GLU ASP ASP GLU THR GLN SER SEQRES 10 B 187 TYR HIS ASN GLY ASN SER ASP PRO ARG GLY PHE GLY HIS SEQRES 11 B 187 ILE GLY ILE ALA VAL PRO ASP VAL TYR SER ALA CYS LYS SEQRES 12 B 187 ARG PHE GLU GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO SEQRES 13 B 187 ASP ASP GLY LYS MET LYS GLY LEU ALA PHE ILE GLN ASP SEQRES 14 B 187 PRO ASP GLY TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS SEQRES 15 B 187 MET ALA THR LEU MET HET ZN A 201 1 HET ZN A 202 1 HET HPW A 203 30 HET HPW B 301 30 HETNAM ZN ZINC ION HETNAM HPW N-[3-(1-HYDROXY-6-OXO-4-PHENYL-1,6-DIHYDRO-PYRIDIN-2- HETNAM 2 HPW YL)-5-METHANESULFONYLAMINO-PHENYL]-METHANESULFONAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HPW 2(C19 H19 N3 O6 S2) FORMUL 7 HOH *160(H2 O) HELIX 1 1 THR A 11 CYS A 18 1 8 HELIX 2 2 ASP A 23 LYS A 27 5 5 HELIX 3 3 ASP A 40 VAL A 51 1 12 HELIX 4 4 ASP A 76 ILE A 80 5 5 HELIX 5 5 GLU A 83 LEU A 92 1 10 HELIX 6 6 GLY A 105 ASP A 109 5 5 HELIX 7 7 ASP A 133 LEU A 144 1 12 HELIX 8 8 ASN A 175 LEU A 182 5 8 HELIX 9 9 THR B 11 SER B 17 1 7 HELIX 10 10 ASP B 23 LYS B 27 5 5 HELIX 11 11 ASP B 40 VAL B 51 1 12 HELIX 12 12 ASP B 76 ILE B 80 5 5 HELIX 13 13 GLU B 83 LEU B 92 1 10 HELIX 14 14 GLY B 105 ASP B 109 5 5 HELIX 15 15 ASP B 133 LEU B 144 1 12 HELIX 16 16 ASN B 175 MET B 179 5 5 SHEET 1 A 8 THR A 55 PHE A 62 0 SHEET 2 A 8 PHE A 67 ALA A 73 -1 O ALA A 73 N THR A 55 SHEET 3 A 8 THR A 97 ASN A 103 -1 O LEU A 98 N LEU A 72 SHEET 4 A 8 LEU A 30 ARG A 37 1 N LEU A 36 O GLU A 99 SHEET 5 A 8 PHE B 124 ALA B 130 -1 O HIS B 126 N MET A 35 SHEET 6 A 8 TRP B 170 LEU B 174 1 O GLU B 172 N ILE B 129 SHEET 7 A 8 ALA B 161 GLN B 164 -1 N ILE B 163 O ILE B 171 SHEET 8 A 8 PHE B 148 LYS B 150 -1 N VAL B 149 O PHE B 162 SHEET 1 B 8 PHE A 148 LYS A 150 0 SHEET 2 B 8 ALA A 161 GLN A 164 -1 O PHE A 162 N VAL A 149 SHEET 3 B 8 TRP A 170 LEU A 174 -1 O ILE A 171 N ILE A 163 SHEET 4 B 8 PHE A 124 ALA A 130 1 N ILE A 129 O GLU A 172 SHEET 5 B 8 LEU B 30 ARG B 37 -1 O MET B 35 N HIS A 126 SHEET 6 B 8 THR B 97 ASN B 103 1 O GLU B 99 N THR B 34 SHEET 7 B 8 PHE B 67 ALA B 73 -1 N LEU B 72 O LEU B 98 SHEET 8 B 8 THR B 55 PHE B 62 -1 N GLN B 58 O PHE B 71 LINK OE1 GLN A 33 ZN ZN A 201 1555 1555 1.99 LINK OE1 GLU A 99 ZN ZN A 201 1555 1555 2.04 LINK NE2 HIS A 126 ZN ZN A 202 1555 1555 2.22 LINK OE1 GLU A 172 ZN ZN A 202 1555 1555 2.25 LINK ZN ZN A 201 NE2 HIS B 126 1555 1555 2.15 LINK ZN ZN A 201 OE1 GLU B 172 1555 1555 2.38 LINK ZN ZN A 201 O22 HPW B 301 1555 1555 2.18 LINK ZN ZN A 201 O25 HPW B 301 1555 1555 2.32 LINK ZN ZN A 202 O22 HPW A 203 1555 1555 2.20 LINK ZN ZN A 202 O25 HPW A 203 1555 1555 2.33 LINK ZN ZN A 202 OE1 GLN B 33 1555 1555 2.07 LINK ZN ZN A 202 OE1 GLU B 99 1555 1555 2.05 CISPEP 1 ASP A 120 PRO A 121 0 -1.75 CISPEP 2 ASP B 120 PRO B 121 0 -2.07 SITE 1 AC1 5 GLN A 33 GLU A 99 HIS B 126 GLU B 172 SITE 2 AC1 5 HPW B 301 SITE 1 AC2 5 HIS A 126 GLU A 172 HPW A 203 GLN B 33 SITE 2 AC2 5 GLU B 99 SITE 1 AC3 16 HIS A 126 LYS A 150 LYS A 156 MET A 157 SITE 2 AC3 16 LEU A 160 GLU A 172 MET A 179 ZN A 202 SITE 3 AC3 16 HOH A 308 GLN B 33 MET B 35 PHE B 67 SITE 4 AC3 16 LEU B 69 PHE B 71 GLU B 99 HOH B 409 SITE 1 AC4 15 GLN A 33 MET A 35 PHE A 67 LEU A 69 SITE 2 AC4 15 ILE A 88 GLU A 99 ZN A 201 HIS B 126 SITE 3 AC4 15 MET B 157 GLU B 172 MET B 179 ALA B 180 SITE 4 AC4 15 HOH B 440 HOH B 463 HOH B 484 CRYST1 86.170 67.380 68.480 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014603 0.00000