HEADER OXIDOREDUCTASE 28-NOV-12 3W2I TITLE CRYSTAL STRUCTURE OF RE-OXIDIZED FORM (60 MIN) OF NADH-CYTOCHROME B5 TITLE 2 REDUCTASE FROM PIG LIVER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-CYTOCHROME B5 REDUCTASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B5R, CYTOCHROME B5 REDUCTASE, DIAPHORASE-1; COMPND 5 EC: 1.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CYB5R3, DIA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS REDUCTASE, CYTOCHROME B5, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YAMADA,T.TAMADA,F.MATSUMOTO,Y.SHOYAMA,S.KIMURA,R.KUROKI,K.MIKI REVDAT 3 20-MAR-24 3W2I 1 REMARK REVDAT 2 30-APR-14 3W2I 1 JRNL REVDAT 1 17-JUL-13 3W2I 0 JRNL AUTH M.YAMADA,T.TAMADA,K.TAKEDA,F.MATSUMOTO,H.OHNO,M.KOSUGI, JRNL AUTH 2 K.TAKABA,Y.SHOYAMA,S.KIMURA,R.KUROKI,K.MIKI JRNL TITL ELUCIDATIONS OF THE CATALYTIC CYCLE OF NADH-CYTOCHROME B5 JRNL TITL 2 REDUCTASE BY X-RAY CRYSTALLOGRAPHY: NEW INSIGHTS INTO JRNL TITL 3 REGULATION OF EFFICIENT ELECTRON TRANSFER JRNL REF J.MOL.BIOL. V. 425 4295 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831226 JRNL DOI 10.1016/J.JMB.2013.06.010 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 32427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7237 - 4.1309 0.93 2602 132 0.1810 0.2069 REMARK 3 2 4.1309 - 3.2800 0.96 2553 139 0.1453 0.1602 REMARK 3 3 3.2800 - 2.8657 0.98 2548 170 0.1556 0.1767 REMARK 3 4 2.8657 - 2.6039 0.99 2565 138 0.1701 0.1924 REMARK 3 5 2.6039 - 2.4173 0.99 2582 137 0.1672 0.2072 REMARK 3 6 2.4173 - 2.2749 1.00 2587 141 0.1649 0.2186 REMARK 3 7 2.2749 - 2.1610 1.00 2567 126 0.1646 0.1758 REMARK 3 8 2.1610 - 2.0669 1.00 2590 134 0.1593 0.2049 REMARK 3 9 2.0669 - 1.9874 1.00 2590 115 0.1610 0.2190 REMARK 3 10 1.9874 - 1.9188 1.00 2560 128 0.1769 0.2405 REMARK 3 11 1.9188 - 1.8588 1.00 2534 161 0.1906 0.2477 REMARK 3 12 1.8588 - 1.8057 0.97 2498 130 0.2247 0.2742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2320 REMARK 3 ANGLE : 1.151 3166 REMARK 3 CHIRALITY : 0.079 341 REMARK 3 PLANARITY : 0.006 400 REMARK 3 DIHEDRAL : 17.095 888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4785 8.1116 -10.8421 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2307 REMARK 3 T33: 0.1513 T12: 0.0522 REMARK 3 T13: -0.0047 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.9492 L22: 3.6011 REMARK 3 L33: 1.2847 L12: -0.7031 REMARK 3 L13: -0.4345 L23: 0.4308 REMARK 3 S TENSOR REMARK 3 S11: 0.2392 S12: 0.2089 S13: 0.0707 REMARK 3 S21: -0.6503 S22: -0.2790 S23: 0.1701 REMARK 3 S31: -0.2648 S32: -0.2614 S33: 0.0614 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9134 17.6178 -12.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2196 REMARK 3 T33: 0.1451 T12: 0.1025 REMARK 3 T13: 0.0217 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 6.0077 L22: 2.7340 REMARK 3 L33: 0.1680 L12: -1.0958 REMARK 3 L13: -0.8135 L23: 0.5259 REMARK 3 S TENSOR REMARK 3 S11: 0.3221 S12: 0.4496 S13: 0.4127 REMARK 3 S21: -0.2163 S22: -0.1585 S23: 0.1463 REMARK 3 S31: -0.4889 S32: -0.3684 S33: -0.0089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5385 2.2646 1.0242 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1532 REMARK 3 T33: 0.1210 T12: -0.0057 REMARK 3 T13: -0.0002 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0622 L22: 7.6144 REMARK 3 L33: 3.3751 L12: 1.5844 REMARK 3 L13: -0.8241 L23: -4.8550 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0618 S13: -0.1348 REMARK 3 S21: 0.4324 S22: 0.1467 S23: -0.0159 REMARK 3 S31: -0.0361 S32: -0.2735 S33: -0.1237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0826 -0.4087 -9.1006 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1766 REMARK 3 T33: 0.0990 T12: -0.0069 REMARK 3 T13: 0.0132 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 2.2661 L22: 4.8712 REMARK 3 L33: 3.0040 L12: -0.5157 REMARK 3 L13: -0.6504 L23: -0.4847 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.1231 S13: -0.1500 REMARK 3 S21: -0.3044 S22: -0.1357 S23: 0.0783 REMARK 3 S31: 0.2856 S32: -0.2453 S33: 0.0864 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3256 17.9070 -10.3311 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1318 REMARK 3 T33: 0.1579 T12: -0.0189 REMARK 3 T13: 0.0016 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6302 L22: 1.2189 REMARK 3 L33: 0.8584 L12: 0.2039 REMARK 3 L13: 0.5397 L23: 0.8923 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.1437 S13: 0.0088 REMARK 3 S21: 0.0281 S22: 0.0665 S23: -0.1367 REMARK 3 S31: -0.1495 S32: 0.1447 S33: -0.0727 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9777 5.1843 -24.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1182 REMARK 3 T33: 0.0822 T12: 0.0108 REMARK 3 T13: 0.0214 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.6684 L22: 3.4876 REMARK 3 L33: 1.3636 L12: 0.4791 REMARK 3 L13: -0.2199 L23: -0.1575 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.1383 S13: 0.0144 REMARK 3 S21: -0.1833 S22: 0.0573 S23: 0.0446 REMARK 3 S31: -0.1217 S32: -0.1127 S33: -0.0559 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6531 -4.8282 -27.8019 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.1425 REMARK 3 T33: 0.1265 T12: -0.0172 REMARK 3 T13: 0.0171 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.8471 L22: 3.0553 REMARK 3 L33: 1.9412 L12: -1.0966 REMARK 3 L13: 0.0352 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.1274 S13: -0.2143 REMARK 3 S21: -0.6581 S22: 0.0688 S23: -0.0538 REMARK 3 S31: 0.3367 S32: -0.0989 S33: -0.0451 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5751 2.3239 -17.1629 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1667 REMARK 3 T33: 0.2108 T12: 0.0092 REMARK 3 T13: -0.0295 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 3.7969 L22: 4.2353 REMARK 3 L33: 2.7757 L12: -0.1858 REMARK 3 L13: -0.5175 L23: 0.2750 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.1291 S13: 0.1433 REMARK 3 S21: 0.1268 S22: 0.1003 S23: -0.6564 REMARK 3 S31: -0.0883 S32: 0.3927 S33: -0.0384 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8_1069 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70%(V/V) MPD, 0.1M HEPES-NAOH PH 6.5, REMARK 280 25MM NADH, 1MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.80650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.95800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.23700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.95800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.80650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.23700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 628 O HOH A 629 1.85 REMARK 500 O HOH A 641 O HOH A 642 1.93 REMARK 500 O HOH A 535 O HOH A 611 1.96 REMARK 500 OXT PHE A 272 O HOH A 623 1.99 REMARK 500 O HOH A 619 O HOH A 638 2.03 REMARK 500 N TRP A 217 O HOH A 615 2.06 REMARK 500 O HOH A 589 O HOH A 634 2.07 REMARK 500 O HOH A 576 O HOH A 610 2.08 REMARK 500 O HOH A 635 O HOH A 639 2.08 REMARK 500 O HOH A 595 O HOH A 617 2.16 REMARK 500 OG SER A 201 O HOH A 462 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 88 -51.48 -131.73 REMARK 500 TYR A 219 -151.90 -103.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NDH RELATED DB: PDB REMARK 900 RELATED ID: 3W2E RELATED DB: PDB REMARK 900 RELATED ID: 3W2F RELATED DB: PDB REMARK 900 RELATED ID: 3W2G RELATED DB: PDB REMARK 900 RELATED ID: 3W2H RELATED DB: PDB REMARK 900 RELATED ID: 3W5H RELATED DB: PDB DBREF 3W2I A 2 272 UNP P83686 NB5R3_PIG 2 272 SEQRES 1 A 271 THR PRO ALA ILE THR LEU GLU ASN PRO ASP ILE LYS TYR SEQRES 2 A 271 PRO LEU ARG LEU ILE ASP LYS GLU VAL VAL ASN HIS ASP SEQRES 3 A 271 THR ARG ARG PHE ARG PHE ALA LEU PRO SER PRO GLU HIS SEQRES 4 A 271 ILE LEU GLY LEU PRO VAL GLY GLN HIS ILE TYR LEU SER SEQRES 5 A 271 ALA ARG ILE ASP GLY ASN LEU VAL ILE ARG PRO TYR THR SEQRES 6 A 271 PRO VAL SER SER ASP ASP ASP LYS GLY PHE VAL ASP LEU SEQRES 7 A 271 VAL ILE LYS VAL TYR PHE LYS ASP THR HIS PRO LYS PHE SEQRES 8 A 271 PRO ALA GLY GLY LYS MET SER GLN TYR LEU GLU SER MET SEQRES 9 A 271 LYS ILE GLY ASP THR ILE GLU PHE ARG GLY PRO ASN GLY SEQRES 10 A 271 LEU LEU VAL TYR GLN GLY LYS GLY LYS PHE ALA ILE ARG SEQRES 11 A 271 PRO ASP LYS LYS SER SER PRO VAL ILE LYS THR VAL LYS SEQRES 12 A 271 SER VAL GLY MET ILE ALA GLY GLY THR GLY ILE THR PRO SEQRES 13 A 271 MET LEU GLN VAL ILE ARG ALA ILE MET LYS ASP PRO ASP SEQRES 14 A 271 ASP HIS THR VAL CYS HIS LEU LEU PHE ALA ASN GLN THR SEQRES 15 A 271 GLU LYS ASP ILE LEU LEU ARG PRO GLU LEU GLU GLU LEU SEQRES 16 A 271 ARG ASN GLU HIS SER ALA ARG PHE LYS LEU TRP TYR THR SEQRES 17 A 271 VAL ASP ARG ALA PRO GLU ALA TRP ASP TYR SER GLN GLY SEQRES 18 A 271 PHE VAL ASN GLU GLU MET ILE ARG ASP HIS LEU PRO PRO SEQRES 19 A 271 PRO GLU GLU GLU PRO LEU VAL LEU MET CYS GLY PRO PRO SEQRES 20 A 271 PRO MET ILE GLN TYR ALA CYS LEU PRO ASN LEU GLU ARG SEQRES 21 A 271 VAL GLY HIS PRO LYS GLU ARG CYS PHE ALA PHE HET FAD A 301 53 HET NAD A 302 35 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *244(H2 O) HELIX 1 1 GLY A 96 MET A 105 1 10 HELIX 2 2 GLY A 154 ASP A 168 1 15 HELIX 3 3 THR A 183 ILE A 187 5 5 HELIX 4 4 LEU A 189 HIS A 200 1 12 HELIX 5 5 ASN A 225 LEU A 233 1 9 HELIX 6 6 PRO A 235 GLU A 239 5 5 HELIX 7 7 PRO A 247 ALA A 254 1 8 HELIX 8 8 CYS A 255 GLY A 263 1 9 HELIX 9 9 PRO A 265 GLU A 267 5 3 SHEET 1 A 6 ASN A 59 TYR A 65 0 SHEET 2 A 6 HIS A 49 ILE A 56 -1 N ILE A 56 O ASN A 59 SHEET 3 A 6 THR A 110 ASN A 117 -1 O ASN A 117 N HIS A 49 SHEET 4 A 6 TYR A 14 VAL A 23 -1 N TYR A 14 O PHE A 113 SHEET 5 A 6 THR A 28 ALA A 34 -1 O ARG A 30 N GLU A 22 SHEET 6 A 6 PHE A 76 LYS A 82 -1 O LEU A 79 N PHE A 31 SHEET 1 B 3 LEU A 120 GLY A 124 0 SHEET 2 B 3 LYS A 127 ILE A 130 -1 O LYS A 127 N GLN A 123 SHEET 3 B 3 VAL A 139 THR A 142 -1 O LYS A 141 N PHE A 128 SHEET 1 C 6 SER A 220 GLN A 221 0 SHEET 2 C 6 PHE A 204 VAL A 210 1 N TYR A 208 O SER A 220 SHEET 3 C 6 VAL A 174 ASN A 181 1 N LEU A 177 O LYS A 205 SHEET 4 C 6 SER A 145 GLY A 151 1 N ALA A 150 O ALA A 180 SHEET 5 C 6 LEU A 241 CYS A 245 1 O LEU A 241 N GLY A 147 SHEET 6 C 6 CYS A 269 ALA A 271 1 O PHE A 270 N VAL A 242 CISPEP 1 GLY A 115 PRO A 116 0 -3.09 SITE 1 AC1 26 ARG A 63 PRO A 64 TYR A 65 THR A 66 SITE 2 AC1 26 VAL A 80 ILE A 81 LYS A 82 TYR A 84 SITE 3 AC1 26 PHE A 85 HIS A 89 PHE A 92 GLY A 95 SITE 4 AC1 26 GLY A 96 LYS A 97 MET A 98 SER A 99 SITE 5 AC1 26 THR A 153 THR A 156 NAD A 302 HOH A 403 SITE 6 AC1 26 HOH A 424 HOH A 454 HOH A 529 HOH A 570 SITE 7 AC1 26 HOH A 616 HOH A 637 SITE 1 AC2 27 LYS A 82 TYR A 84 GLY A 151 GLY A 152 SITE 2 AC2 27 THR A 153 GLY A 154 ALA A 180 ASN A 181 SITE 3 AC2 27 GLN A 182 ASP A 211 PHE A 223 CYS A 245 SITE 4 AC2 27 GLY A 246 PRO A 247 PRO A 249 MET A 250 SITE 5 AC2 27 FAD A 301 HOH A 409 HOH A 412 HOH A 414 SITE 6 AC2 27 HOH A 512 HOH A 523 HOH A 588 HOH A 591 SITE 7 AC2 27 HOH A 594 HOH A 614 HOH A 635 CRYST1 57.613 72.474 83.916 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011917 0.00000