HEADER IMMUNE SYSTEM 06-DEC-12 3W2V TITLE CRYSTAL STRUCTURE OF THE CMR2DHD-CMR3 SUBCOMPLEX BOUND TO 3'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR SYSTEM CMR SUBUNIT CMR2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 216-871; COMPND 5 SYNONYM: CRISPR-ASSOCIATED PROTEIN CAS10/CMR2, SUBTYPE III-B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CRISPR SYSTEM CMR SUBUNIT CMR3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CRISPR TYPE III-B/RAMP MODULE-ASSOCIATED PROTEIN CMR3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 GENE: CMR2, PF1129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 13 ORGANISM_TAXID: 186497; SOURCE 14 STRAIN: DSM 3638; SOURCE 15 GENE: CMR3, PF1128; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS FERREDOXIN-LIKE FOLD, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.NUMATA,T.OSAWA REVDAT 2 08-NOV-23 3W2V 1 REMARK SEQADV LINK REVDAT 1 16-OCT-13 3W2V 0 JRNL AUTH T.OSAWA,H.INANAGA,T.NUMATA JRNL TITL CRYSTAL STRUCTURE OF THE CMR2-CMR3 SUBCOMPLEX IN THE JRNL TITL 2 CRISPR-CAS RNA SILENCING EFFECTOR COMPLEX. JRNL REF J.MOL.BIOL. V. 425 3811 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23583914 JRNL DOI 10.1016/J.JMB.2013.03.042 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4088877.930 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6547 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 343 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.20000 REMARK 3 B22 (A**2) : 3.20000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 51.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : 3AM-2.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : 3AM-2.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3W2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42206 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.06300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UNG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5-15% 2-PROPANAOL, 18MM MGCL2, 45MM REMARK 280 MES (PH 6.0), 20MM AMMONIUM ACETATE, 10MM SODIUM ACETATE, 3% PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.33450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.98650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.33450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.98650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.97000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.33450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.98650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.97000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.33450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.98650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 GLY A 207 REMARK 465 LEU A 208 REMARK 465 VAL A 209 REMARK 465 PRO A 210 REMARK 465 ARG A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 HIS A 214 REMARK 465 MET A 215 REMARK 465 VAL A 216 REMARK 465 LEU A 558 REMARK 465 SER A 559 REMARK 465 LYS A 560 REMARK 465 LYS A 561 REMARK 465 LEU A 562 REMARK 465 LYS A 563 REMARK 465 ASN A 564 REMARK 465 LYS A 565 REMARK 465 LYS A 566 REMARK 465 GLU A 567 REMARK 465 ILE A 568 REMARK 465 MET A 604 REMARK 465 GLY A 605 REMARK 465 LYS A 606 REMARK 465 VAL A 607 REMARK 465 ILE A 608 REMARK 465 SER A 609 REMARK 465 GLY A 610 REMARK 465 GLU A 611 REMARK 465 VAL A 612 REMARK 465 LEU A 613 REMARK 465 GLY A 614 REMARK 465 GLU A 615 REMARK 465 ILE A 616 REMARK 465 SER A 617 REMARK 465 THR A 618 REMARK 465 ARG A 619 REMARK 465 ILE A 620 REMARK 465 HIS A 621 REMARK 465 PRO A 622 REMARK 465 ASN A 623 REMARK 465 ILE A 624 REMARK 465 ARG A 625 REMARK 465 ASP A 626 REMARK 465 TYR A 627 REMARK 465 VAL A 628 REMARK 465 GLU A 629 REMARK 465 ILE A 630 REMARK 465 PRO A 631 REMARK 465 GLU A 632 REMARK 465 ALA A 633 REMARK 465 LYS A 634 REMARK 465 TYR A 635 REMARK 465 TYR A 636 REMARK 465 SER A 637 REMARK 465 ASN A 701 REMARK 465 GLY A 702 REMARK 465 SER A 703 REMARK 465 LEU A 704 REMARK 465 LEU A 705 REMARK 465 PRO A 706 REMARK 465 LYS A 784 REMARK 465 GLY A 785 REMARK 465 VAL B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 PRO B 19 REMARK 465 PHE B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 GLU B 25 REMARK 465 SER B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 ARG B 29 REMARK 465 SER B 30 REMARK 465 ILE B 31 REMARK 465 GLY B 148 REMARK 465 ILE B 149 REMARK 465 LYS B 150 REMARK 465 LEU B 151 REMARK 465 SER B 152 REMARK 465 ARG B 153 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 LYS B 156 REMARK 465 VAL B 157 REMARK 465 VAL B 158 REMARK 465 GLU B 159 REMARK 465 GLU B 160 REMARK 465 GLY B 161 REMARK 465 MET B 162 REMARK 465 LEU B 163 REMARK 465 TYR B 164 REMARK 465 GLY B 198 REMARK 465 GLY B 199 REMARK 465 GLU B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ASN A 288 CG OD1 ND2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 394 CG OD1 OD2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 PHE A 401 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 ASN A 407 CG OD1 ND2 REMARK 470 SER A 408 OG REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 ASP A 569 CG OD1 OD2 REMARK 470 GLU A 570 CG CD OE1 OE2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 LYS A 572 CG CD CE NZ REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 THR A 638 OG1 CG2 REMARK 470 ASP A 663 CG OD1 OD2 REMARK 470 LYS A 824 CG CD CE NZ REMARK 470 GLU A 850 CG CD OE1 OE2 REMARK 470 ILE B 32 CG1 CG2 CD1 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 PHE B 168 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 219 127.99 -38.12 REMARK 500 VAL A 229 -78.77 -107.17 REMARK 500 ARG A 275 -68.49 -23.70 REMARK 500 GLU A 287 163.42 -47.62 REMARK 500 ALA A 311 -78.46 -35.11 REMARK 500 ASP A 346 151.76 -42.59 REMARK 500 GLU A 349 9.50 -62.59 REMARK 500 ILE A 381 -67.89 -29.95 REMARK 500 SER A 391 81.73 -69.25 REMARK 500 ASN A 407 72.19 -64.90 REMARK 500 ILE A 414 -6.52 -55.03 REMARK 500 LYS A 439 152.28 -40.64 REMARK 500 GLU A 453 -60.23 -97.12 REMARK 500 ASN A 513 25.68 47.91 REMARK 500 TYR A 522 -3.91 -146.33 REMARK 500 SER A 534 136.18 -174.42 REMARK 500 PHE A 537 0.75 -65.36 REMARK 500 LYS A 539 107.11 -178.43 REMARK 500 ASP A 540 44.80 71.20 REMARK 500 ASN A 541 17.62 56.64 REMARK 500 GLU A 555 37.54 -86.99 REMARK 500 SER A 556 -70.34 -163.04 REMARK 500 GLU A 570 -52.16 -22.28 REMARK 500 LYS A 662 -125.56 55.80 REMARK 500 ALA A 670 85.11 -157.21 REMARK 500 LYS A 737 -70.70 -118.70 REMARK 500 LYS A 744 -132.04 42.00 REMARK 500 LEU A 781 9.22 -67.21 REMARK 500 GLU A 782 15.37 -141.07 REMARK 500 PHE B 47 -70.93 -48.27 REMARK 500 LEU B 51 52.91 -63.76 REMARK 500 LYS B 52 2.46 -69.39 REMARK 500 GLU B 89 -135.05 69.51 REMARK 500 LYS B 109 21.36 -147.08 REMARK 500 GLU B 144 108.79 -161.47 REMARK 500 LYS B 211 126.97 -172.37 REMARK 500 ASN B 250 67.12 37.22 REMARK 500 SER B 261 -103.69 -132.73 REMARK 500 SER B 267 -136.00 -96.83 REMARK 500 GLU B 296 149.56 -32.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 448 SG REMARK 620 2 CYS A 451 SG 105.6 REMARK 620 3 CYS A 478 SG 116.2 108.9 REMARK 620 4 CYS A 481 SG 99.6 116.1 110.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AM A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W2W RELATED DB: PDB DBREF 3W2V A 216 871 UNP Q8U1S6 CMR2_PYRFU 216 871 DBREF 3W2V B 1 322 UNP Q8U1S7 CMR3_PYRFU 1 322 SEQADV 3W2V MET A 195 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V GLY A 196 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V SER A 197 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V SER A 198 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 199 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 200 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 201 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 202 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 203 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 204 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V SER A 205 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V SER A 206 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V GLY A 207 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V LEU A 208 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V VAL A 209 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V PRO A 210 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V ARG A 211 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V GLY A 212 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V SER A 213 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V HIS A 214 UNP Q8U1S6 EXPRESSION TAG SEQADV 3W2V MET A 215 UNP Q8U1S6 EXPRESSION TAG SEQRES 1 A 677 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 677 LEU VAL PRO ARG GLY SER HIS MET VAL LYS ASP PRO THR SEQRES 3 A 677 LEU LEU ARG ILE LYS ILE VAL PRO VAL GLN PRO PHE ILE SEQRES 4 A 677 ALA ASN SER ARG LYS GLN LEU ASP LEU TRP ALA SER SER SEQRES 5 A 677 HIS LEU LEU SER MET LEU MET TYR LYS ALA LEU GLU VAL SEQRES 6 A 677 ILE VAL ASP LYS PHE GLY PRO GLU HIS VAL ILE TYR PRO SEQRES 7 A 677 SER LEU ARG ASP GLN PRO PHE PHE LEU LYS PHE TYR LEU SEQRES 8 A 677 GLY GLU ASN ILE GLY ASP GLU ILE LEU VAL ALA ASN LEU SEQRES 9 A 677 PRO ASN LYS ALA LEU ALA ILE VAL SER GLY LYS GLU ALA SEQRES 10 A 677 GLU LYS ILE GLU GLU GLU ILE LYS LYS ARG ILE ARG ASP SEQRES 11 A 677 PHE LEU LEU GLN LEU TYR ARG GLU ALA VAL ASP TRP ALA SEQRES 12 A 677 VAL GLU ASN GLY VAL VAL LYS VAL ASP ARG SER GLU LYS SEQRES 13 A 677 ASP SER MET LEU LYS GLU ALA TYR LEU LYS ILE VAL ARG SEQRES 14 A 677 GLU TYR PHE THR VAL SER ILE THR TRP VAL SER LEU SER SEQRES 15 A 677 GLU LYS GLU ASP ILE TYR GLN VAL THR GLU ASN ALA GLY SEQRES 16 A 677 LEU SER ASP GLU ASP VAL LYS LYS TRP LEU LYS PHE ALA SEQRES 17 A 677 GLU LYS LYS GLU ASN SER ARG VAL LEU GLU ARG ILE ALA SEQRES 18 A 677 ILE TYR PRO LEU LEU VAL LYS ILE LEU ASP SER LEU GLY SEQRES 19 A 677 GLU ARG LYS VAL THR GLU GLU ARG PHE GLU LYS SER GLU SEQRES 20 A 677 GLN LEU LYS GLY TRP LYS CYS HIS VAL CYS GLY GLU ASN SEQRES 21 A 677 LEU ALA ILE PHE GLY ASP MET TYR ASP HIS ASP ASN LEU SEQRES 22 A 677 LYS SER LEU TRP LEU ASP GLU GLU PRO LEU CYS PRO MET SEQRES 23 A 677 CYS LEU ILE LYS ARG TYR TYR PRO VAL TRP ILE ARG SER SEQRES 24 A 677 LYS THR GLY GLN LYS ILE ARG PHE GLU SER VAL VAL ASP SEQRES 25 A 677 VAL ALA LEU LEU TYR LYS ASN TRP ARG LYS ILE PHE ASP SEQRES 26 A 677 GLU LYS TYR GLY LYS ASP LEU VAL SER LYS ALA ARG GLU SEQRES 27 A 677 VAL SER GLU ASP PHE VAL LYS ASP ASN MET LEU VAL ASP SEQRES 28 A 677 SER ASP LEU TYR TYR SER SER THR TRP GLU SER GLY LEU SEQRES 29 A 677 SER LYS LYS LEU LYS ASN LYS LYS GLU ILE ASP GLU GLU SEQRES 30 A 677 LYS VAL LYS GLU VAL VAL ASP PHE LEU ASN ALA ALA TYR SEQRES 31 A 677 LYS GLU ILE GLY ASN PRO PRO LYS TYR TYR ALA ILE LEU SEQRES 32 A 677 VAL MET ASP GLY ASP ASP MET GLY LYS VAL ILE SER GLY SEQRES 33 A 677 GLU VAL LEU GLY GLU ILE SER THR ARG ILE HIS PRO ASN SEQRES 34 A 677 ILE ARG ASP TYR VAL GLU ILE PRO GLU ALA LYS TYR TYR SEQRES 35 A 677 SER THR PRO GLN VAL HIS VAL ALA ILE SER GLN ALA LEU SEQRES 36 A 677 ALA ASN PHE SER ILE ARG GLU VAL ARG SER VAL VAL LYS SEQRES 37 A 677 ASP GLU GLY LEU LEU ILE TYR ALA GLY GLY ASP ASP VAL SEQRES 38 A 677 LEU ALA ILE LEU PRO VAL ASP LYS ALA LEU GLU VAL ALA SEQRES 39 A 677 TYR LYS ILE ARG LYS GLU PHE GLY LYS SER PHE GLU ASN SEQRES 40 A 677 GLY SER LEU LEU PRO GLY TRP LYS LEU SER ALA GLY ILE SEQRES 41 A 677 LEU ILE VAL HIS TYR LYS HIS PRO LEU TYR ASP ALA LEU SEQRES 42 A 677 GLU LYS ALA ARG ASP LEU LEU ASN ASN LYS ALA LYS ASN SEQRES 43 A 677 VAL PRO GLY LYS ASP THR LEU ALA ILE GLY LEU LEU LYS SEQRES 44 A 677 ARG SER GLY SER TYR TYR ILE SER LEU VAL GLY TRP GLU SEQRES 45 A 677 LEU ILE ARG VAL PHE TYR ASN SER GLU LEU ARG LYS LYS SEQRES 46 A 677 LEU LEU GLU GLU LYS GLY GLY VAL GLY LYS ARG PHE ILE SEQRES 47 A 677 TYR HIS VAL LEU ARG GLU VAL ASP THR TRP PRO LYS VAL SEQRES 48 A 677 GLY ILE ASP GLU MET LEU LYS PHE GLU VAL ILE ARG HIS SEQRES 49 A 677 ILE ARG GLY ARG ASN LYS GLU GLU THR LYS GLU LEU ARG SEQRES 50 A 677 GLU LYS ILE TYR GLY GLU ILE LYS ASP LEU LEU GLU HIS SEQRES 51 A 677 VAL ARG GLY ASN ASN GLU VAL GLU LYS VAL ARG GLY LEU SEQRES 52 A 677 PHE THR PHE LEU LYS ILE ILE THR ASP ALA GLU VAL PHE SEQRES 53 A 677 PRO SEQRES 1 B 322 MET ILE GLU VAL THR PHE THR PRO TYR ASP VAL LEU LEU SEQRES 2 B 322 PHE ARG GLU SER ARG PRO PHE ASP ALA GLY SER GLU SER SEQRES 3 B 322 VAL ALA ARG SER ILE ILE PRO LEU PRO GLN THR VAL ALA SEQRES 4 B 322 GLY ALA ILE ARG THR LEU LEU PHE TYR LYS GLY LEU LYS SEQRES 5 B 322 ASN CYS VAL GLY VAL GLY GLU GLU GLU PRO GLU PHE THR SEQRES 6 B 322 LEU VAL GLY ILE ALA ILE GLY THR GLU LYS GLY ARG ILE SEQRES 7 B 322 TYR PRO LEU PRO PHE ASN ILE ILE LYS SER GLU LYS PHE SEQRES 8 B 322 TYR LYS VAL VAL ASN PRO GLY ARG PHE LEU GLY LYS LEU SEQRES 9 B 322 ILE LEU PRO PRO LYS GLY LYS TYR LYS SER GLY TYR VAL SEQRES 10 B 322 THR GLU SER ILE LEU GLU LYS TYR LEU LYS GLY GLU LEU SEQRES 11 B 322 LYS GLU VAL GLU GLU ASN LYS VAL ILE ARG ILE GLU LYS SEQRES 12 B 322 GLU LYS ARG ILE GLY ILE LYS LEU SER ARG GLU LYS LYS SEQRES 13 B 322 VAL VAL GLU GLU GLY MET LEU TYR THR VAL GLU PHE LEU SEQRES 14 B 322 ARG ILE GLU LYS ILE TYR ALA TRP ILE GLU ASP PRO GLY SEQRES 15 B 322 CYS GLY ILE LYS ASP ILE LEU SER SER TYR GLU PHE LEU SEQRES 16 B 322 THR LEU GLY GLY GLU SER ARG VAL ALA PHE VAL GLU VAL SEQRES 17 B 322 ASP ASP LYS THR PRO ASP ILE PHE ASN ARG GLU LEU GLY SEQRES 18 B 322 SER THR LYS LYS ALA LEU PHE TYR PHE SER THR PRO THR SEQRES 19 B 322 ILE GLY LYS VAL GLY GLU ILE VAL GLN GLU LEU GLU LYS SEQRES 20 B 322 ARG LEU ASN ALA LYS ILE ASP ASP TYR LEU LEU VAL SER SEQRES 21 B 322 SER ARG PRO THR ALA ILE SER GLY TRP ASP MET HIS GLU SEQRES 22 B 322 LYS LYS PRO LYS GLY THR LYS PHE ALA ILE PRO PRO GLY SEQRES 23 B 322 SER VAL LEU PHE VAL GLU PHE LYS GLU GLU VAL GLU VAL SEQRES 24 B 322 PRO PRO TYR ILE LYS LEU GLY LYS LEU LYS LYS LEU GLY SEQRES 25 B 322 TYR GLY LEU ALA LEU GLY GLY ILE TRP GLU HET ZN A 901 1 HET 3AM A 902 23 HETNAM ZN ZINC ION HETNAM 3AM [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-HYDROXY-2- HETNAM 2 3AM (HYDROXYMETHYL)OXOLAN-3-YL] DIHYDROGEN PHOSPHATE HETSYN 3AM 3'-AMP FORMUL 3 ZN ZN 2+ FORMUL 4 3AM C10 H14 N5 O7 P FORMUL 5 HOH *26(H2 O) HELIX 1 1 VAL A 229 ASN A 235 1 7 HELIX 2 2 LYS A 238 GLY A 265 1 28 HELIX 3 3 GLN A 277 TYR A 284 1 8 HELIX 4 4 GLY A 290 VAL A 295 5 6 HELIX 5 5 GLU A 310 ASN A 340 1 31 HELIX 6 6 ARG A 347 LEU A 354 5 8 HELIX 7 7 LYS A 355 TYR A 365 1 11 HELIX 8 8 ILE A 381 ALA A 388 1 8 HELIX 9 9 ASP A 392 LYS A 405 1 14 HELIX 10 10 ILE A 416 ARG A 436 1 21 HELIX 11 11 ASP A 463 SER A 469 1 7 HELIX 12 12 LEU A 470 GLU A 475 5 6 HELIX 13 13 CYS A 478 GLY A 496 1 19 HELIX 14 14 SER A 503 LEU A 509 1 7 HELIX 15 15 LEU A 510 LYS A 512 5 3 HELIX 16 16 ASN A 513 ASP A 519 1 7 HELIX 17 17 TYR A 522 GLU A 532 1 11 HELIX 18 18 SER A 534 VAL A 538 5 5 HELIX 19 19 ASP A 545 TYR A 549 5 5 HELIX 20 20 TYR A 550 GLU A 555 1 6 HELIX 21 21 GLU A 570 GLY A 588 1 19 HELIX 22 22 PRO A 639 ARG A 655 1 17 HELIX 23 23 ARG A 655 LYS A 662 1 8 HELIX 24 24 VAL A 681 SER A 698 1 18 HELIX 25 25 PRO A 722 LYS A 737 1 16 HELIX 26 26 ALA A 738 VAL A 741 5 4 HELIX 27 27 TRP A 765 ASN A 773 1 9 HELIX 28 28 SER A 774 LEU A 781 1 8 HELIX 29 29 VAL A 787 VAL A 799 1 13 HELIX 30 30 GLY A 806 ILE A 819 1 14 HELIX 31 31 ASN A 823 HIS A 844 1 22 HELIX 32 32 ASN A 849 THR A 865 1 17 HELIX 33 33 PRO B 33 LYS B 49 1 17 HELIX 34 34 GLU B 119 LYS B 127 1 9 HELIX 35 35 ASN B 136 VAL B 138 5 3 HELIX 36 36 GLY B 184 SER B 190 1 7 HELIX 37 37 PRO B 213 ARG B 218 5 6 HELIX 38 38 LYS B 237 ASN B 250 1 14 HELIX 39 39 LEU B 308 GLY B 312 5 5 SHEET 1 A 4 VAL A 269 TYR A 271 0 SHEET 2 A 4 LYS A 301 SER A 307 -1 O LEU A 303 N TYR A 271 SHEET 3 A 4 PRO A 219 VAL A 227 -1 N LEU A 222 O ALA A 304 SHEET 4 A 4 THR A 367 SER A 374 -1 O SER A 369 N LYS A 225 SHEET 1 B 2 LYS A 378 ASP A 380 0 SHEET 2 B 2 VAL A 410 GLU A 412 -1 O LEU A 411 N GLU A 379 SHEET 1 C 6 LEU A 666 ALA A 670 0 SHEET 2 C 6 VAL A 675 PRO A 680 -1 O ILE A 678 N LEU A 666 SHEET 3 C 6 TYR A 593 GLY A 601 -1 N LEU A 597 O ALA A 677 SHEET 4 C 6 LEU A 710 HIS A 718 -1 O GLY A 713 N VAL A 598 SHEET 5 C 6 THR A 746 LEU A 752 1 O GLY A 750 N ILE A 716 SHEET 6 C 6 TYR A 758 GLY A 764 -1 O TYR A 759 N LEU A 751 SHEET 1 D 7 TYR B 116 THR B 118 0 SHEET 2 D 7 GLY B 76 PRO B 80 -1 N TYR B 79 O VAL B 117 SHEET 3 D 7 THR B 65 THR B 73 -1 N ILE B 71 O ILE B 78 SHEET 4 D 7 LYS B 173 GLU B 179 -1 O GLU B 179 N THR B 65 SHEET 5 D 7 ILE B 2 TYR B 9 -1 N PHE B 6 O ILE B 174 SHEET 6 D 7 VAL B 203 ASP B 209 -1 O ASP B 209 N GLU B 3 SHEET 7 D 7 PHE B 194 THR B 196 -1 N LEU B 195 O ALA B 204 SHEET 1 E 3 ILE B 85 SER B 88 0 SHEET 2 E 3 PHE B 91 VAL B 94 -1 O PHE B 91 N SER B 88 SHEET 3 E 3 GLU B 132 GLU B 134 -1 O VAL B 133 N TYR B 92 SHEET 1 F 2 GLY B 98 PHE B 100 0 SHEET 2 F 2 LYS B 103 ILE B 105 -1 O ILE B 105 N GLY B 98 SHEET 1 G 2 LYS B 143 ARG B 146 0 SHEET 2 G 2 VAL B 166 LEU B 169 -1 O VAL B 166 N ARG B 146 SHEET 1 H 5 ILE B 253 VAL B 259 0 SHEET 2 H 5 VAL B 288 GLU B 298 -1 O PHE B 290 N LEU B 257 SHEET 3 H 5 SER B 222 PHE B 230 -1 N PHE B 228 O LEU B 289 SHEET 4 H 5 LEU B 315 ILE B 320 -1 O LEU B 317 N TYR B 229 SHEET 5 H 5 TYR B 302 LYS B 304 -1 N ILE B 303 O ALA B 316 SHEET 1 I 3 THR B 234 ILE B 235 0 SHEET 2 I 3 LYS B 280 ILE B 283 -1 O ILE B 283 N THR B 234 SHEET 3 I 3 THR B 264 ILE B 266 -1 N ILE B 266 O LYS B 280 SSBOND 1 CYS B 54 CYS B 183 1555 1555 2.03 LINK SG CYS A 448 ZN ZN A 901 1555 1555 2.46 LINK SG CYS A 451 ZN ZN A 901 1555 1555 2.58 LINK SG CYS A 478 ZN ZN A 901 1555 1555 2.42 LINK SG CYS A 481 ZN ZN A 901 1555 1555 2.41 CISPEP 1 VAL A 227 PRO A 228 0 0.06 CISPEP 2 TYR A 271 PRO A 272 0 -0.15 SITE 1 AC1 4 CYS A 448 CYS A 451 CYS A 478 CYS A 481 SITE 1 AC2 11 VAL A 229 GLN A 230 ILE A 233 SER A 246 SITE 2 AC2 11 LEU A 249 ASN A 300 LYS A 301 TYR A 669 SITE 3 AC2 11 ASP A 674 HOH A1002 LYS B 111 CRYST1 103.940 136.669 191.973 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005209 0.00000